Wall clock time and date at job start Tue Mar 31 2020 11:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47318 * 2 1 4 4 C 1.53000 * 109.47199 * 239.99871 * 2 1 3 5 5 C 1.52998 * 109.47158 * 120.00290 * 2 1 3 6 6 N 1.46498 * 109.47264 * 55.63589 * 5 2 1 7 7 C 1.46496 * 120.00389 * 87.89656 * 6 5 2 8 8 C 1.50705 * 109.47219 * 90.40199 * 7 6 5 9 9 H 1.07998 * 119.99505 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00204 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00197 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00141 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47248 * 90.00316 * 12 10 8 14 14 H 1.48498 * 109.47283 * 210.00105 * 12 10 8 15 15 H 1.48502 * 109.47387 * 329.99846 * 12 10 8 16 16 C 1.34782 * 119.99919 * 267.89414 * 6 5 2 17 17 O 1.21671 * 119.99981 * 6.37765 * 16 6 5 18 18 C 1.46932 * 120.00232 * 186.37118 * 16 6 5 19 19 C 1.36484 * 126.72249 * 8.14383 * 18 16 6 20 20 N 1.35359 * 109.77177 * 179.97438 * 19 18 16 21 21 H 0.96996 * 124.82547 * 180.02562 * 20 19 18 22 22 C 1.37863 * 110.35072 * 359.97438 * 20 19 18 23 23 C 1.39225 * 133.47391 * 179.97438 * 22 20 19 24 24 C 1.38338 * 118.29593 * 180.02562 * 23 22 20 25 25 C 1.38596 * 119.64615 * 0.02562 * 24 23 22 26 26 N 1.31632 * 121.19154 * 0.02562 * 25 24 23 27 27 C 1.32699 * 121.42767 * 359.71193 * 26 25 24 28 28 H 1.08993 * 109.46738 * 300.72064 * 1 2 3 29 29 H 1.09004 * 109.46746 * 60.71649 * 1 2 3 30 30 H 1.09000 * 109.46942 * 180.71584 * 1 2 3 31 31 H 1.09002 * 109.46824 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46904 * 300.00045 * 3 2 1 33 33 H 1.08995 * 109.47144 * 59.99671 * 3 2 1 34 34 H 1.08997 * 109.47279 * 300.00513 * 4 2 1 35 35 H 1.08999 * 109.47050 * 59.99938 * 4 2 1 36 36 H 1.08997 * 109.47482 * 179.97438 * 4 2 1 37 37 H 1.09006 * 109.46698 * 295.63369 * 5 2 1 38 38 H 1.09001 * 109.47545 * 175.63932 * 5 2 1 39 39 H 1.08991 * 109.47274 * 210.40435 * 7 6 5 40 40 H 1.08997 * 109.46818 * 330.40859 * 7 6 5 41 41 H 0.96998 * 120.00567 * 179.97438 * 11 10 8 42 42 H 1.07999 * 125.11317 * 359.94614 * 19 18 16 43 43 H 1.07995 * 120.85193 * 359.97438 * 23 22 20 44 44 H 1.07997 * 120.17426 * 179.97438 * 24 23 22 45 45 H 1.08000 * 119.40377 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 7 1.4678 -2.0688 1.3029 7 6 2.1454 -3.1798 0.6300 8 6 3.1093 -3.8335 1.5865 9 1 3.2070 -3.4591 2.5947 10 6 3.8664 -4.9095 1.1743 11 7 3.7479 -5.3652 -0.0537 12 14 5.0606 -5.7202 2.3599 13 1 4.3665 -6.8076 3.0954 14 1 6.2037 -6.2876 1.6006 15 1 5.5612 -4.7100 3.3264 16 6 0.3178 -2.2865 1.9713 17 8 -0.3056 -1.3482 2.4311 18 6 -0.1830 -3.6569 2.1448 19 6 0.4719 -4.8115 1.8273 20 7 -0.3059 -5.8771 2.1300 21 1 -0.0536 -6.8037 1.9933 22 6 -1.5073 -5.4585 2.6611 23 6 -2.6348 -6.1297 3.1263 24 6 -3.6935 -5.3793 3.6058 25 6 -3.6067 -3.9961 3.6105 26 7 -2.5325 -3.3789 3.1655 27 6 -1.4891 -4.0542 2.7006 28 1 -0.3632 0.5250 0.8834 29 1 -0.3633 0.5027 -0.8964 30 1 -0.3633 -1.0276 0.0128 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7209 -1.2495 37 1 1.7419 -0.1642 2.1375 38 1 3.1272 -0.7895 1.2110 39 1 1.4066 -3.9110 0.3023 40 1 2.6914 -2.8022 -0.2345 41 1 4.2808 -6.1219 -0.3439 42 1 1.4616 -4.8665 1.3986 43 1 -2.6821 -7.2086 3.1125 44 1 -4.5831 -5.8687 3.9736 45 1 -4.4357 -3.4141 3.9852 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346309484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:12 Heat of formation + Delta-G solvation = 41.470101 kcal Electronic energy + Delta-G solvation = -27436.749686 eV Core-core repulsion = 23841.232474 eV Total energy + Delta-G solvation = -3595.517212 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.25626 -39.14963 -37.49393 -36.31017 -34.56700 -32.50824 -32.36648 -29.75586 -29.23431 -27.77572 -26.82593 -26.62251 -25.61531 -23.32244 -23.19860 -22.14048 -21.38422 -18.90217 -18.07525 -17.30139 -16.78053 -16.48459 -16.04704 -15.36047 -15.04313 -14.88185 -14.53661 -14.43648 -14.22034 -13.70514 -13.14672 -13.04349 -12.90193 -12.70687 -12.51096 -12.32483 -12.14303 -12.06523 -11.82110 -11.73055 -11.20066 -11.11902 -11.07855 -10.92842 -10.67429 -10.42315 -10.29522 -10.11321 -9.96638 -9.85521 -9.78636 -9.05648 -8.84708 -8.65769 -8.09734 -7.68575 -7.48474 -6.41790 -4.51615 1.31366 1.64904 2.65809 3.06243 3.16686 3.21839 3.39063 4.01131 4.06070 4.17832 4.54792 4.72070 4.86851 4.95732 5.17407 5.26115 5.32225 5.34211 5.44709 5.48438 5.77741 5.86170 5.98638 5.99440 6.04207 6.13793 6.23110 6.25252 6.30558 6.34678 6.40022 6.47734 6.56026 6.62494 6.68192 6.69286 6.71544 6.88678 6.92686 7.01755 7.11985 7.29867 7.51765 7.68420 7.78265 7.85220 8.42436 8.51941 8.69000 9.13368 9.35203 10.59482 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.009116 B = 0.006712 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3070.720340 B = 4170.691278 C = 6646.555510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.085 4.085 3 C -0.135 4.135 4 C -0.141 4.141 5 C 0.136 3.864 6 N -0.595 5.595 7 C 0.212 3.788 8 C -0.543 4.543 9 H 0.069 0.931 10 C 0.063 3.937 11 N -0.884 5.884 12 Si 0.894 3.106 13 H -0.278 1.278 14 H -0.283 1.283 15 H -0.270 1.270 16 C 0.589 3.411 17 O -0.553 6.553 18 C -0.235 4.235 19 C 0.130 3.870 20 N -0.582 5.582 21 H 0.418 0.582 22 C 0.023 3.977 23 C -0.083 4.083 24 C -0.174 4.174 25 C 0.084 3.916 26 N -0.435 5.435 27 C 0.143 3.857 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.051 0.949 41 H 0.270 0.730 42 H 0.254 0.746 43 H 0.127 0.873 44 H 0.132 0.868 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.625 -0.754 0.673 6.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.086 4.086 3 C -0.193 4.193 4 C -0.198 4.198 5 C 0.013 3.987 6 N -0.326 5.326 7 C 0.092 3.908 8 C -0.581 4.581 9 H 0.087 0.913 10 C -0.141 4.141 11 N -0.521 5.521 12 Si 0.721 3.279 13 H -0.204 1.204 14 H -0.208 1.208 15 H -0.194 1.194 16 C 0.380 3.620 17 O -0.433 6.433 18 C -0.245 4.245 19 C -0.003 4.003 20 N -0.184 5.184 21 H 0.255 0.745 22 C -0.084 4.084 23 C -0.112 4.112 24 C -0.195 4.195 25 C -0.082 4.082 26 N -0.142 5.142 27 C 0.008 3.992 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.269 0.731 43 H 0.145 0.855 44 H 0.150 0.850 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.749 0.431 0.743 6.804 hybrid contribution 0.822 -2.120 0.510 2.331 sum -5.927 -1.689 1.253 6.289 Atomic orbital electron populations 1.21782 0.94089 1.02085 1.00436 1.20964 0.96451 0.94865 0.96326 1.21786 1.00588 0.95670 1.01290 1.21987 1.00672 1.01159 0.96032 1.21295 0.97577 0.83052 0.96822 1.47839 1.23189 1.09320 1.52236 1.20043 0.92633 0.84662 0.93475 1.21695 1.22364 1.14524 0.99542 0.91299 1.25043 0.96625 0.97031 0.95407 1.69936 1.40563 1.25483 1.16125 0.86527 0.80808 0.79670 0.80906 1.20408 1.20815 1.19422 1.17014 0.80308 0.86838 0.77878 1.90714 1.57736 1.43654 1.51225 1.19937 0.94494 0.93826 1.16248 1.25658 0.98265 0.84175 0.92162 1.41838 1.13067 1.09624 1.53839 0.74457 1.19249 0.89687 0.95656 1.03850 1.20421 0.91347 0.99537 0.99875 1.21724 0.99018 0.95418 1.03341 1.22612 0.95727 0.91764 0.98132 1.67124 0.98938 1.40098 1.08084 1.19672 0.93308 0.87725 0.98473 0.92115 0.94471 0.92712 0.92879 0.93071 0.92831 0.91456 0.93833 0.92819 0.91086 0.90798 0.93863 0.93127 0.92022 0.73088 0.85491 0.84983 0.83101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 7.09 37.16 0.26 -2.00 16 2 C -0.08 -1.41 0.85 -154.51 -0.13 -1.54 16 3 C -0.14 -1.87 8.47 37.16 0.31 -1.56 16 4 C -0.14 -2.30 7.38 37.16 0.27 -2.03 16 5 C 0.14 2.56 4.59 -4.04 -0.02 2.55 16 6 N -0.60 -12.54 1.96 -176.51 -0.35 -12.88 16 7 C 0.21 4.64 3.69 -5.19 -0.02 4.62 16 8 C -0.54 -12.62 7.13 -34.44 -0.25 -12.87 16 9 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 10 C 0.06 1.47 4.94 -17.82 -0.09 1.39 16 11 N -0.88 -21.23 13.29 55.43 0.74 -20.49 16 12 Si 0.89 18.63 29.54 -169.99 -5.02 13.61 16 13 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 14 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 15 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 16 C 0.59 13.48 6.16 -12.74 -0.08 13.40 16 17 O -0.55 -13.67 14.57 5.21 0.08 -13.60 16 18 C -0.23 -5.14 6.09 -103.28 -0.63 -5.77 16 19 C 0.13 2.56 9.30 -16.63 -0.15 2.41 16 20 N -0.58 -9.58 5.98 -10.46 -0.06 -9.64 16 21 H 0.42 5.38 8.96 -40.82 -0.37 5.01 16 22 C 0.02 0.41 7.27 -83.94 -0.61 -0.20 16 23 C -0.08 -1.14 10.19 -39.18 -0.40 -1.54 16 24 C -0.17 -2.24 10.09 -39.41 -0.40 -2.64 16 25 C 0.08 1.30 11.16 -17.50 -0.20 1.10 16 26 N -0.44 -8.85 10.41 -9.71 -0.10 -8.95 16 27 C 0.14 2.98 7.36 -82.92 -0.61 2.37 16 28 H 0.06 1.15 7.48 -51.93 -0.39 0.77 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 1.11 6.23 -51.93 -0.32 0.79 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.23 5.75 -51.93 -0.30 0.93 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.38 7.45 -51.93 -0.39 1.00 16 38 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 39 H 0.04 0.98 4.92 -51.93 -0.26 0.72 16 40 H 0.05 1.14 5.76 -51.93 -0.30 0.84 16 41 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 42 H 0.25 5.34 2.70 -52.49 -0.14 5.20 16 43 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 45 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -28.79 355.33 -8.32 -37.11 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -6.23 Total: 11.82 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -2.72 Total: -2.32 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.23 Total: -51.97 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.08 Total: -13.60 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.61 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.79 -8.32 -37.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346309484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.579 kcal (2) G-P(sol) polarization free energy of solvation -28.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds