Wall clock time and date at job start Tue Mar 31 2020 11:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47375 * 2 1 4 4 C 1.53001 * 109.47616 * 120.00078 * 2 1 3 5 5 C 1.53009 * 109.46619 * 64.99807 * 4 2 1 6 6 N 1.46501 * 109.46485 * 180.02562 * 5 4 2 7 7 C 1.46494 * 119.99985 * 269.99657 * 6 5 4 8 8 C 1.50707 * 109.47304 * 263.47339 * 7 6 5 9 9 H 1.07996 * 119.99655 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99795 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00267 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99487 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47352 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.46918 * 119.99937 * 12 10 8 15 15 H 1.48502 * 109.46984 * 239.99540 * 12 10 8 16 16 C 1.34782 * 119.99851 * 90.00475 * 6 5 4 17 17 O 1.21765 * 120.00004 * 4.20615 * 16 6 5 18 18 C 1.46296 * 120.00036 * 184.21033 * 16 6 5 19 19 N 1.32512 * 125.56321 * 354.28768 * 18 16 6 20 20 C 1.32025 * 109.86938 * 180.02562 * 19 18 16 21 21 C 1.39365 * 107.92881 * 0.02562 * 20 19 18 22 22 C 1.40421 * 133.41676 * 180.02562 * 21 20 19 23 23 C 1.36327 * 119.19220 * 179.97438 * 22 21 20 24 24 C 1.40325 * 119.58685 * 359.97438 * 23 22 21 25 25 C 1.35161 * 120.39691 * 0.27291 * 24 23 22 26 26 N 1.36184 * 120.59819 * 359.45272 * 25 24 23 27 27 H 1.09002 * 109.47464 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46585 * 299.99929 * 1 2 3 29 29 H 1.08999 * 109.47293 * 59.99466 * 1 2 3 30 30 H 1.09006 * 109.47233 * 240.00387 * 2 1 3 31 31 H 1.09005 * 109.47377 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.47208 * 300.00373 * 3 2 1 33 33 H 1.08996 * 109.47359 * 60.00047 * 3 2 1 34 34 H 1.08990 * 109.46911 * 305.00311 * 4 2 1 35 35 H 1.08994 * 109.47253 * 184.99448 * 4 2 1 36 36 H 1.08997 * 109.46927 * 60.00186 * 5 4 2 37 37 H 1.08994 * 109.47015 * 299.99787 * 5 4 2 38 38 H 1.08996 * 109.47155 * 23.47670 * 7 6 5 39 39 H 1.09006 * 109.47297 * 143.47433 * 7 6 5 40 40 H 0.97004 * 119.99942 * 180.02562 * 11 10 8 41 41 H 1.07989 * 126.03664 * 180.02562 * 20 19 18 42 42 H 1.08004 * 120.40002 * 0.02562 * 22 21 20 43 43 H 1.08003 * 120.20470 * 179.97438 * 23 22 21 44 44 H 1.08003 * 119.79904 * 180.02562 * 24 23 22 45 45 H 1.07999 * 119.70139 * 179.72216 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1878 6 7 2.1232 -2.8860 2.3843 7 6 3.4514 -3.5040 2.3828 8 6 3.3221 -4.9720 2.0673 9 1 2.3480 -5.4014 1.8855 10 6 4.4474 -5.7666 2.0106 11 7 5.6336 -5.2435 2.2314 12 14 4.2871 -7.5861 1.6187 13 1 2.8558 -7.9238 1.4124 14 1 5.0522 -7.8958 0.3842 15 1 4.8259 -8.3851 2.7486 16 6 1.3500 -2.9527 3.4862 17 8 0.2172 -2.5067 3.4631 18 6 1.8718 -3.5608 4.7102 19 7 3.0411 -4.1729 4.8288 20 6 3.1979 -4.6051 6.0664 21 6 2.0615 -4.2517 6.7915 22 6 1.6711 -4.4412 8.1269 23 6 0.4634 -3.9630 8.5409 24 6 -0.3655 -3.2917 7.6291 25 6 0.0248 -3.1230 6.3461 26 7 1.2310 -3.5910 5.9212 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 3.1301 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6055 -0.2618 2.1369 35 1 3.1264 -0.6444 1.2950 36 1 2.0698 -2.6550 0.3001 37 1 0.5490 -2.2724 1.1420 38 1 4.0748 -3.0238 1.6286 39 1 3.9098 -3.3824 3.3643 40 1 6.4253 -5.8026 2.1912 41 1 4.0554 -5.1383 6.4493 42 1 2.3201 -4.9587 8.8179 43 1 0.1466 -4.1000 9.5643 44 1 -1.3228 -2.9111 7.9534 45 1 -0.6240 -2.6086 5.6526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601037310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:29 Heat of formation + Delta-G solvation = 52.091127 kcal Electronic energy + Delta-G solvation = -26770.882112 eV Core-core repulsion = 23175.825462 eV Total energy + Delta-G solvation = -3595.056650 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.44430 -38.97822 -37.16207 -36.51638 -34.73001 -33.02164 -32.33330 -30.77801 -29.42973 -27.81963 -27.01997 -26.73439 -24.21798 -23.47266 -22.93444 -22.00229 -21.64064 -19.78822 -19.12818 -17.01301 -16.61972 -16.34238 -16.08250 -15.58514 -15.42394 -15.21206 -14.89546 -14.38830 -14.27970 -14.24479 -13.62274 -13.43308 -13.22153 -12.89779 -12.29547 -12.18831 -12.13461 -12.07692 -11.74124 -11.68849 -11.57542 -11.35389 -10.97776 -10.86246 -10.74584 -10.70607 -10.50967 -10.46574 -10.20963 -9.97941 -9.58992 -9.39868 -9.04687 -9.00651 -8.22933 -7.71294 -7.12169 -5.92026 -3.92367 0.97300 1.20566 2.71248 2.88828 3.34233 3.41975 3.46845 3.63978 3.98105 4.11453 4.52810 4.67112 4.83875 4.97360 5.02207 5.08991 5.10463 5.13504 5.16444 5.24206 5.44267 5.59931 5.72312 5.74427 5.83075 5.86058 5.89527 5.95757 5.99983 6.02454 6.11378 6.13080 6.24846 6.29188 6.33626 6.39541 6.61274 6.68238 6.75773 6.86363 6.91271 7.33988 7.57174 7.84026 7.98897 8.24502 8.36114 8.39488 8.89855 9.09750 9.69016 11.16588 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.008035 B = 0.006149 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3483.799159 B = 4552.275219 C = 7349.260958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.128 4.128 5 C 0.119 3.881 6 N -0.569 5.569 7 C 0.222 3.778 8 C -0.505 4.505 9 H 0.050 0.950 10 C 0.071 3.929 11 N -0.890 5.890 12 Si 0.886 3.114 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.284 1.284 16 C 0.604 3.396 17 O -0.585 6.585 18 C 0.101 3.899 19 N -0.333 5.333 20 C -0.019 4.019 21 C 0.005 3.995 22 C -0.077 4.077 23 C -0.125 4.125 24 C -0.150 4.150 25 C 0.070 3.930 26 N -0.330 5.330 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.028 0.972 39 H 0.083 0.917 40 H 0.259 0.741 41 H 0.182 0.818 42 H 0.145 0.855 43 H 0.134 0.866 44 H 0.145 0.855 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.352 7.540 7.343 13.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.296 5.296 7 C 0.103 3.897 8 C -0.544 4.544 9 H 0.069 0.931 10 C -0.131 4.131 11 N -0.529 5.529 12 Si 0.714 3.286 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.211 1.211 16 C 0.391 3.609 17 O -0.468 6.468 18 C -0.148 4.148 19 N -0.047 5.047 20 C -0.181 4.181 21 C -0.106 4.106 22 C -0.097 4.097 23 C -0.147 4.147 24 C -0.171 4.171 25 C -0.053 4.053 26 N 0.001 4.999 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.046 0.954 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.199 0.801 42 H 0.163 0.837 43 H 0.151 0.849 44 H 0.163 0.837 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.207 7.722 6.430 12.974 hybrid contribution -0.474 -1.218 0.508 1.402 sum -8.681 6.504 6.938 12.876 Atomic orbital electron populations 1.21878 0.95378 1.02073 1.01111 1.21048 0.95803 0.95928 0.98487 1.21822 1.00979 0.96160 1.01245 1.22006 1.01321 0.95682 0.97625 1.21460 1.00064 0.91082 0.87790 1.48010 1.19667 1.51570 1.10355 1.20086 0.76381 0.92393 1.00797 1.21244 0.92893 0.93379 1.46896 0.93148 1.24729 0.95177 0.97756 0.95402 1.69932 0.97653 1.35401 1.49927 0.86643 0.77907 0.86218 0.77796 1.20152 1.21204 1.21069 1.16140 0.84351 0.78630 0.81793 1.90704 1.18737 1.52574 1.84805 1.22680 0.92271 1.12907 0.86963 1.70815 1.11624 1.05246 1.17018 1.22985 0.98075 1.07311 0.89752 1.20005 0.94835 1.03758 0.92000 1.20500 0.97038 0.99981 0.92209 1.21023 0.94346 0.99236 1.00071 1.20815 1.01607 1.02751 0.91959 1.21999 0.86606 0.99392 0.97268 1.42590 1.12797 1.34605 1.09955 0.92232 0.92832 0.93274 0.91071 0.92706 0.93048 0.92951 0.92090 0.91581 0.90193 0.90581 0.95393 0.89998 0.93162 0.80143 0.83716 0.84860 0.83734 0.80983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.95 37.16 0.33 -1.49 16 2 C -0.09 -1.22 2.92 -90.62 -0.26 -1.48 16 3 C -0.14 -1.65 9.19 37.16 0.34 -1.31 16 4 C -0.13 -2.05 5.01 -26.73 -0.13 -2.18 16 5 C 0.12 2.23 5.17 -4.04 -0.02 2.21 16 6 N -0.57 -12.70 2.47 -176.73 -0.44 -13.13 16 7 C 0.22 5.61 4.76 -5.19 -0.02 5.59 16 8 C -0.50 -13.88 8.39 -34.44 -0.29 -14.17 16 9 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 10 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 11 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 12 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 16 C 0.60 13.65 7.57 -13.02 -0.10 13.55 16 17 O -0.59 -13.15 14.91 5.13 0.08 -13.07 16 18 C 0.10 2.22 7.53 -153.90 -1.16 1.06 16 19 N -0.33 -7.61 6.82 -10.62 -0.07 -7.68 16 20 C -0.02 -0.37 12.00 -17.05 -0.20 -0.57 16 21 C 0.00 0.08 6.80 -84.20 -0.57 -0.49 16 22 C -0.08 -0.97 10.11 -39.45 -0.40 -1.37 16 23 C -0.13 -1.36 10.08 -39.49 -0.40 -1.76 16 24 C -0.15 -1.75 9.98 -39.89 -0.40 -2.15 16 25 C 0.07 1.08 10.52 -16.71 -0.18 0.91 16 26 N -0.33 -6.15 2.95 -58.89 -0.17 -6.33 16 27 H 0.06 0.78 6.56 -51.93 -0.34 0.44 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.08 1.48 8.07 -51.93 -0.42 1.06 16 37 H 0.08 1.42 5.79 -51.93 -0.30 1.12 16 38 H 0.03 0.73 8.02 -51.93 -0.42 0.32 16 39 H 0.08 2.20 5.27 -51.93 -0.27 1.92 16 40 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.18 2.93 8.06 -52.49 -0.42 2.51 16 42 H 0.15 1.35 8.06 -52.48 -0.42 0.92 16 43 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 44 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 45 H 0.17 2.63 6.79 -52.49 -0.36 2.28 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -32.03 369.73 -9.61 -41.64 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.73 Total: 2.72 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -3.56 Total: -1.78 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.05 Total: -51.81 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.08 Total: -13.07 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.03 -9.61 -41.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601037310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.733 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds