Wall clock time and date at job start Tue Mar 31 2020 11:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00084 * 2 1 4 4 C 1.53002 * 109.47364 * 125.00147 * 3 2 1 5 5 H 1.08998 * 109.46646 * 55.00156 * 4 3 2 6 6 N 1.46498 * 109.47216 * 295.00439 * 4 3 2 7 7 C 1.34780 * 120.00080 * 84.99554 * 6 4 3 8 8 O 1.21579 * 119.99649 * 355.38200 * 7 6 4 9 9 N 1.34771 * 119.99673 * 175.38041 * 7 6 4 10 10 C 1.46504 * 119.99672 * 184.99895 * 9 7 6 11 11 C 1.52996 * 109.46933 * 184.98614 * 10 9 7 12 12 C 1.50696 * 115.55510 * 56.52635 * 11 10 9 13 13 H 1.07998 * 120.00056 * 267.32020 * 12 11 10 14 14 C 1.37883 * 119.99915 * 87.31831 * 12 11 10 15 15 N 1.31518 * 120.00094 * 179.16328 * 14 12 11 16 16 Si 1.86799 * 120.00101 * 359.15955 * 14 12 11 17 17 H 1.48493 * 109.47043 * 91.61173 * 16 14 12 18 18 H 1.48500 * 109.47035 * 211.61050 * 16 14 12 19 19 H 1.48502 * 109.47118 * 331.60594 * 16 14 12 20 20 C 1.53000 * 117.49753 * 270.85441 * 11 10 9 21 21 C 1.53005 * 117.50009 * 202.19796 * 11 10 9 22 22 C 1.50697 * 109.47211 * 174.99942 * 4 3 2 23 23 C 1.38650 * 120.78932 * 79.72340 * 22 4 3 24 24 C 1.38209 * 119.16632 * 179.75388 * 23 22 4 25 25 N 1.31865 * 120.75701 * 0.53006 * 24 23 22 26 26 C 1.31868 * 121.73091 * 359.74240 * 25 24 23 27 27 C 1.38203 * 120.76332 * 359.97438 * 26 25 24 28 28 H 1.07999 * 119.99866 * 180.02562 * 1 2 3 29 29 H 1.07994 * 120.00007 * 359.71995 * 1 2 3 30 30 H 1.08006 * 120.00156 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47624 * 245.00183 * 3 2 1 32 32 H 1.09005 * 109.46960 * 5.00073 * 3 2 1 33 33 H 0.97001 * 119.99691 * 265.00463 * 6 4 3 34 34 H 0.97001 * 120.00617 * 4.99997 * 9 7 6 35 35 H 1.09007 * 109.46892 * 304.98020 * 10 9 7 36 36 H 1.08992 * 109.47261 * 64.98563 * 10 9 7 37 37 H 0.96993 * 120.00243 * 180.02562 * 15 14 12 38 38 H 1.08998 * 117.49861 * 0.02562 * 20 11 10 39 39 H 1.09006 * 117.49672 * 145.02409 * 20 11 10 40 40 H 1.08996 * 117.50154 * 214.98259 * 21 11 10 41 41 H 1.09007 * 117.49413 * 359.97409 * 21 11 10 42 42 H 1.08011 * 120.41749 * 359.97438 * 23 22 4 43 43 H 1.07996 * 119.62054 * 180.24799 * 24 23 22 44 44 H 1.07999 * 119.61954 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.41990 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 1 3.6827 0.4573 1.1402 6 7 2.2787 1.3222 2.4362 7 6 1.8700 0.1525 2.9666 8 8 2.0552 -0.8864 2.3627 9 7 1.2561 0.1346 4.1662 10 6 0.9102 -1.1436 4.7930 11 6 0.1183 -0.8846 6.0761 12 6 -1.1349 -0.0639 5.9121 13 1 -1.0996 1.0076 6.0424 14 6 -2.3267 -0.6810 5.5957 15 7 -3.4237 0.0332 5.4687 16 14 -2.3831 -2.5316 5.3472 17 1 -2.7078 -3.1943 6.6358 18 1 -3.4250 -2.8646 4.3429 19 1 -1.0612 -3.0068 4.8653 20 6 0.9114 -0.7113 7.3730 21 6 0.1052 -1.9903 7.1336 22 6 3.8748 2.5825 1.1120 23 6 3.3720 3.8004 1.5435 24 6 4.1731 4.9242 1.4692 25 7 5.3975 4.8488 0.9855 26 6 5.9065 3.7087 0.5610 27 6 5.1665 2.5425 0.6097 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9352 0.0046 30 1 1.8501 -0.9353 -0.0004 31 1 2.6213 1.4027 -0.9314 32 1 1.3585 2.1316 0.0896 33 1 2.0719 2.1569 2.8850 34 1 1.0433 0.9680 4.6147 35 1 0.3044 -1.7334 4.1050 36 1 1.8227 -1.6892 5.0331 37 1 -4.2621 -0.4009 5.2465 38 1 1.9974 -0.7814 7.3119 39 1 0.5265 -0.0040 8.1076 40 1 -0.8097 -2.1239 7.7108 41 1 0.6605 -2.9024 6.9149 42 1 2.3682 3.8695 1.9361 43 1 3.7903 5.8759 1.8070 44 1 6.9132 3.6861 0.1707 45 1 5.5890 1.6118 0.2610 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797459708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:47 Heat of formation + Delta-G solvation = 53.026489 kcal Electronic energy + Delta-G solvation = -26180.599043 eV Core-core repulsion = 22585.582953 eV Total energy + Delta-G solvation = -3595.016089 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.70333 -39.48986 -37.37469 -36.24288 -33.76042 -33.22772 -32.25536 -32.12431 -31.42549 -28.77419 -26.49213 -25.20259 -24.42052 -23.77169 -21.80590 -21.51456 -20.26886 -19.67213 -19.28328 -18.01017 -17.19628 -16.42580 -16.27641 -15.87628 -15.66399 -15.27556 -14.89552 -14.66069 -14.14176 -14.09640 -13.88595 -13.79548 -13.59076 -13.32134 -12.99691 -12.78375 -12.43349 -12.21307 -12.02527 -11.86607 -11.51242 -11.17142 -10.79385 -10.73489 -10.52613 -10.19395 -9.95638 -9.77454 -9.72751 -9.57206 -9.42164 -9.36989 -9.17968 -8.67071 -8.61598 -8.60284 -8.13130 -6.17423 -4.21941 0.86965 0.93159 2.65824 3.05305 3.27891 3.38369 3.44045 3.56013 3.71152 4.19892 4.24892 4.39187 4.52319 4.61280 4.80333 4.89469 4.98512 5.02882 5.12765 5.16286 5.35140 5.38962 5.48178 5.55673 5.62383 5.68719 5.71913 5.88889 6.00324 6.05969 6.06854 6.25466 6.28899 6.41179 6.41872 6.49080 6.66143 6.69223 6.98043 6.99982 7.06854 7.11146 7.20344 7.39909 7.66831 7.70847 8.38871 8.54920 8.81734 9.10811 9.46160 10.93819 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.003514 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.719798 B = 7966.209822 C = 8517.269061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.129 4.129 3 C -0.098 4.098 4 C 0.210 3.790 5 H 0.100 0.900 6 N -0.746 5.746 7 C 0.705 3.295 8 O -0.595 6.595 9 N -0.717 5.717 10 C 0.176 3.824 11 C -0.015 4.015 12 C -0.489 4.489 13 H 0.077 0.923 14 C 0.082 3.918 15 N -0.895 5.895 16 Si 0.879 3.121 17 H -0.279 1.279 18 H -0.294 1.294 19 H -0.256 1.256 20 C -0.179 4.179 21 C -0.193 4.193 22 C -0.042 4.042 23 C -0.165 4.165 24 C 0.102 3.898 25 N -0.488 5.488 26 C 0.100 3.900 27 C -0.162 4.162 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.393 0.607 34 H 0.400 0.600 35 H 0.063 0.937 36 H 0.038 0.962 37 H 0.265 0.735 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.136 0.864 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.748 5.794 -9.296 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.147 4.147 3 C -0.137 4.137 4 C 0.104 3.896 5 H 0.118 0.882 6 N -0.403 5.403 7 C 0.405 3.595 8 O -0.474 6.474 9 N -0.370 5.370 10 C 0.052 3.948 11 C -0.016 4.016 12 C -0.526 4.526 13 H 0.095 0.905 14 C -0.122 4.122 15 N -0.532 5.532 16 Si 0.707 3.293 17 H -0.205 1.205 18 H -0.221 1.221 19 H -0.180 1.180 20 C -0.216 4.216 21 C -0.231 4.231 22 C -0.051 4.051 23 C -0.185 4.185 24 C -0.055 4.055 25 N -0.197 5.197 26 C -0.057 4.057 27 C -0.182 4.182 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.132 0.868 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.228 0.772 34 H 0.234 0.766 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.092 0.908 42 H 0.154 0.846 43 H 0.174 0.826 44 H 0.173 0.827 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 15.231 5.553 -9.890 18.990 hybrid contribution -1.101 -1.012 0.465 1.566 sum 14.130 4.541 -9.425 17.581 Atomic orbital electron populations 1.23659 0.95948 1.01309 1.02341 1.22673 0.95823 0.97555 0.98636 1.21205 0.98211 0.97031 0.97261 1.19532 0.91395 0.94711 0.83937 0.88225 1.45131 1.61272 1.08104 1.25835 1.15877 0.78776 0.83551 0.81329 1.90845 1.63117 1.31547 1.61865 1.44942 1.62067 1.10793 1.19160 1.20944 0.96348 0.83247 0.94286 1.19629 0.97261 0.98665 0.86072 1.20135 0.89170 0.94428 1.48857 0.90518 1.24948 0.95311 0.98180 0.93713 1.69880 0.99556 1.36104 1.47669 0.86867 0.78464 0.86110 0.77905 1.20528 1.22106 1.17995 1.22862 0.96011 1.00187 1.02587 1.22937 1.02019 0.92247 1.05917 1.20444 0.94274 0.95130 0.95236 1.22020 1.01737 0.93132 1.01625 1.22779 0.89477 0.98489 0.94711 1.67683 1.13585 1.28491 1.09976 1.22760 0.99810 0.87690 0.95449 1.22034 0.94274 1.00550 1.01360 0.88882 0.89360 0.86809 0.90463 0.91218 0.77197 0.76625 0.91836 0.94366 0.92515 0.90933 0.89488 0.89196 0.90756 0.84608 0.82572 0.82655 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.00 14.32 29.01 0.42 -2.58 16 2 C -0.13 -1.85 6.82 -36.03 -0.25 -2.10 16 3 C -0.10 -1.12 5.32 -27.88 -0.15 -1.27 16 4 C 0.21 2.40 2.48 -69.08 -0.17 2.23 16 5 H 0.10 1.25 7.55 -51.93 -0.39 0.85 16 6 N -0.75 -9.85 5.01 -59.82 -0.30 -10.15 16 7 C 0.70 12.35 7.97 -86.92 -0.69 11.66 16 8 O -0.59 -12.05 13.43 5.30 0.07 -11.98 16 9 N -0.72 -13.20 5.37 -65.23 -0.35 -13.55 16 10 C 0.18 3.65 5.33 -4.04 -0.02 3.63 16 11 C -0.01 -0.32 0.92 -155.66 -0.14 -0.47 16 12 C -0.49 -12.60 8.91 -34.44 -0.31 -12.91 16 13 H 0.08 2.13 8.06 -52.49 -0.42 1.70 16 14 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 15 N -0.90 -26.23 13.96 55.43 0.77 -25.45 16 16 Si 0.88 21.39 24.90 -169.99 -4.23 17.15 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 19 H -0.26 -6.00 5.60 56.52 0.32 -5.69 16 20 C -0.18 -3.39 9.93 -26.70 -0.27 -3.66 16 21 C -0.19 -3.93 7.57 -26.69 -0.20 -4.13 16 22 C -0.04 -0.41 4.98 -104.32 -0.52 -0.93 16 23 C -0.17 -1.49 9.15 -39.44 -0.36 -1.85 16 24 C 0.10 0.94 11.18 -17.55 -0.20 0.74 16 25 N -0.49 -5.10 10.36 -13.25 -0.14 -5.24 16 26 C 0.10 0.88 11.18 -17.55 -0.20 0.68 16 27 C -0.16 -1.40 9.78 -39.44 -0.39 -1.78 16 28 H 0.09 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.09 1.29 7.84 -52.49 -0.41 0.88 16 30 H 0.11 1.78 7.46 -52.48 -0.39 1.39 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.79 7.79 -51.93 -0.40 0.38 16 33 H 0.39 4.43 6.99 -40.82 -0.29 4.15 16 34 H 0.40 6.92 8.21 -40.82 -0.34 6.58 16 35 H 0.06 1.49 6.48 -51.92 -0.34 1.15 16 36 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 37 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 40 H 0.09 1.92 7.20 -51.93 -0.37 1.55 16 41 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 42 H 0.14 1.05 7.03 -52.48 -0.37 0.69 16 43 H 0.16 1.07 8.06 -52.49 -0.42 0.64 16 44 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 369.96 15.07 5.58 5.58 Total: -1.00 -31.47 369.96 -8.88 -40.35 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -6.75 Total: 13.89 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -3.54 Total: -10.59 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.01 Total: -54.39 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.07 Total: -11.98 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.23 Total: 17.15 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.47 -8.88 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797459708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.375 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds