Wall clock time and date at job start Tue Mar 31 2020 11:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46922 * 2 1 4 4 C 1.53003 * 109.47308 * 119.99784 * 2 1 3 5 5 C 1.53004 * 109.47154 * 64.99941 * 4 2 1 6 6 N 1.46501 * 109.46939 * 180.02562 * 5 4 2 7 7 C 1.46502 * 119.99493 * 269.99529 * 6 5 4 8 8 C 1.50696 * 109.47487 * 275.81911 * 7 6 5 9 9 H 1.08002 * 119.99914 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00095 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00392 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99864 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47059 * 90.00340 * 12 10 8 14 14 H 1.48502 * 109.47217 * 210.00172 * 12 10 8 15 15 H 1.48498 * 109.47355 * 329.99925 * 12 10 8 16 16 C 1.34772 * 120.00126 * 90.00115 * 6 5 4 17 17 O 1.21586 * 120.00072 * 4.92650 * 16 6 5 18 18 C 1.47584 * 119.99884 * 184.92188 * 16 6 5 19 19 C 1.40089 * 120.35687 * 131.87326 * 18 16 6 20 20 N 1.31159 * 121.12044 * 180.02562 * 19 18 16 21 21 C 1.33364 * 121.67972 * 359.97438 * 20 19 18 22 22 C 1.41844 * 133.17295 * 179.97438 * 21 20 19 23 23 C 1.34451 * 107.95968 * 180.02562 * 22 21 20 24 24 N 1.36540 * 109.71592 * 0.02562 * 23 22 21 25 25 H 0.97001 * 125.59651 * 180.02562 * 24 23 22 26 26 C 1.37850 * 108.80406 * 0.02562 * 24 23 22 27 27 C 1.38726 * 133.56985 * 179.97438 * 26 24 23 28 28 H 1.09001 * 109.46951 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47387 * 299.99979 * 1 2 3 30 30 H 1.09000 * 109.47581 * 60.00299 * 1 2 3 31 31 H 1.09004 * 109.47069 * 239.99667 * 2 1 3 32 32 H 1.09002 * 109.46512 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.46796 * 299.99460 * 3 2 1 34 34 H 1.08990 * 109.47211 * 60.00412 * 3 2 1 35 35 H 1.09004 * 109.47047 * 304.99926 * 4 2 1 36 36 H 1.09000 * 109.47448 * 185.00303 * 4 2 1 37 37 H 1.09000 * 109.46695 * 60.00192 * 5 4 2 38 38 H 1.09000 * 109.46739 * 299.99907 * 5 4 2 39 39 H 1.08999 * 109.47133 * 35.82568 * 7 6 5 40 40 H 1.09001 * 109.46419 * 155.82238 * 7 6 5 41 41 H 0.96990 * 120.00551 * 180.02562 * 11 10 8 42 42 H 1.07999 * 119.43648 * 0.04559 * 19 18 16 43 43 H 1.08002 * 126.02173 * 0.04445 * 22 21 20 44 44 H 1.08003 * 125.14639 * 180.26706 * 23 22 21 45 45 H 1.08008 * 120.90623 * 0.03892 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1955 1.1881 6 7 2.1231 -2.8859 2.3846 7 6 3.4514 -3.5039 2.3831 8 6 3.3638 -4.8816 1.7787 9 1 2.4138 -5.2589 1.4301 10 6 4.4964 -5.6603 1.6708 11 7 5.6532 -5.2011 2.0957 12 14 4.3879 -7.3678 0.9209 13 1 4.6102 -7.2797 -0.5448 14 1 5.4245 -8.2414 1.5270 15 1 3.0430 -7.9395 1.1842 16 6 1.3500 -2.9525 3.4865 17 8 0.2144 -2.5189 3.4595 18 6 1.8819 -3.5517 4.7259 19 6 1.7366 -2.8892 5.9516 20 7 2.2039 -3.4077 7.0621 21 6 2.8345 -4.5828 7.0752 22 6 3.4250 -5.3558 8.1076 23 6 3.9279 -6.4727 7.5533 24 7 3.6940 -6.4649 6.2081 25 1 3.9587 -7.1595 5.5849 26 6 3.0198 -5.3078 5.8810 27 6 2.5381 -4.7862 4.6892 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6054 -0.2616 2.1370 36 1 3.1263 -0.6443 1.2952 37 1 2.0699 -2.6550 0.3004 38 1 0.5489 -2.2723 1.1422 39 1 4.1361 -2.8922 1.7957 40 1 3.8182 -3.5789 3.4068 41 1 6.4501 -5.7487 2.0195 42 1 1.2310 -1.9354 5.9828 43 1 3.4636 -5.0935 9.1546 44 1 4.4362 -7.2592 8.0912 45 1 2.6643 -5.3200 3.7588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879110264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:44 Heat of formation + Delta-G solvation = 17.405197 kcal Electronic energy + Delta-G solvation = -26670.269623 eV Core-core repulsion = 23073.708878 eV Total energy + Delta-G solvation = -3596.560744 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32601 -39.32379 -37.20914 -36.37444 -34.90839 -32.76621 -32.41772 -29.92945 -29.48612 -28.63372 -27.12801 -26.98981 -23.93855 -23.34449 -23.15611 -21.93100 -20.50402 -19.76526 -18.91501 -17.58338 -16.95390 -16.53078 -15.97965 -15.54536 -15.24129 -14.96545 -14.63415 -14.50185 -14.18278 -13.82024 -13.34783 -13.28151 -13.05452 -12.81762 -12.57002 -12.48818 -12.18186 -12.10224 -12.04457 -11.92774 -11.60393 -11.36030 -11.16053 -10.99836 -10.89729 -10.72199 -10.53340 -10.33195 -10.09194 -9.90681 -9.67350 -9.50100 -8.77033 -8.72678 -8.05431 -7.78219 -7.67574 -6.36011 -4.44829 1.21668 1.79936 2.86452 3.05106 3.14440 3.17084 3.29127 3.50996 3.87026 4.15030 4.44350 4.65638 4.92075 5.03017 5.09738 5.14328 5.16197 5.29921 5.33174 5.57744 5.61708 5.72410 5.74413 5.84449 5.87542 5.91176 6.00871 6.02001 6.05168 6.13364 6.27751 6.34283 6.36247 6.40772 6.61247 6.63310 6.68659 6.72609 6.77933 6.92631 7.12450 7.31076 7.47538 7.59227 7.67424 7.89439 8.25007 8.46673 8.63467 8.93150 9.21951 10.68716 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.010279 B = 0.005269 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.463417 B = 5313.232322 C = 7387.952505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.128 4.128 5 C 0.119 3.881 6 N -0.588 5.588 7 C 0.229 3.771 8 C -0.543 4.543 9 H 0.064 0.936 10 C 0.068 3.932 11 N -0.880 5.880 12 Si 0.889 3.111 13 H -0.276 1.276 14 H -0.284 1.284 15 H -0.271 1.271 16 C 0.567 3.433 17 O -0.564 6.564 18 C -0.171 4.171 19 C 0.142 3.858 20 N -0.470 5.470 21 C 0.101 3.899 22 C -0.206 4.206 23 C 0.071 3.929 24 N -0.576 5.576 25 H 0.421 0.579 26 C 0.030 3.970 27 C -0.021 4.021 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.035 0.965 40 H 0.046 0.954 41 H 0.267 0.733 42 H 0.157 0.843 43 H 0.147 0.853 44 H 0.174 0.826 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.338 1.682 2.880 4.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.167 4.167 5 C -0.004 4.004 6 N -0.317 5.317 7 C 0.109 3.891 8 C -0.581 4.581 9 H 0.082 0.918 10 C -0.137 4.137 11 N -0.517 5.517 12 Si 0.716 3.284 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.196 1.196 16 C 0.354 3.646 17 O -0.446 6.446 18 C -0.178 4.178 19 C -0.028 4.028 20 N -0.179 5.179 21 C -0.030 4.030 22 C -0.232 4.232 23 C -0.061 4.061 24 N -0.178 5.178 25 H 0.259 0.741 26 C -0.079 4.079 27 C -0.049 4.049 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.174 0.826 43 H 0.165 0.835 44 H 0.191 0.809 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.713 2.142 3.624 5.008 hybrid contribution 0.621 -1.814 -1.582 2.486 sum -2.092 0.327 2.042 2.941 Atomic orbital electron populations 1.21880 0.95341 1.02087 1.01161 1.21046 0.95835 0.95901 0.98472 1.21821 1.00903 0.96205 1.01287 1.21999 1.01134 0.95862 0.97663 1.21383 1.00008 0.90997 0.88012 1.48129 1.19178 1.52879 1.11478 1.19623 0.77811 0.92664 0.98962 1.21505 0.94977 1.00074 1.41580 0.91752 1.24971 0.95104 0.98537 0.95056 1.69942 0.99068 1.37514 1.45174 0.86635 0.78019 0.83695 0.80095 1.20140 1.20969 1.19600 1.17975 0.84827 0.78555 0.83206 1.90694 1.18337 1.50740 1.84795 1.20529 1.04609 0.97188 0.95481 1.22503 0.95433 0.98904 0.85938 1.67173 1.10683 1.10572 1.29426 1.19114 0.99461 0.91912 0.92474 1.20427 1.08244 0.95598 0.98949 1.21923 1.01471 0.99846 0.82862 1.41748 1.49095 1.18788 1.08167 0.74074 1.19063 1.02191 0.90059 0.96592 1.21780 0.90693 0.94578 0.97853 0.92237 0.92722 0.93320 0.91203 0.92791 0.93085 0.92864 0.91955 0.91802 0.90401 0.90582 0.94704 0.93627 0.92353 0.82616 0.83538 0.80859 0.80687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.95 37.16 0.33 -1.50 16 2 C -0.09 -1.21 2.92 -90.62 -0.26 -1.48 16 3 C -0.14 -1.66 9.19 37.16 0.34 -1.32 16 4 C -0.13 -2.02 5.01 -26.73 -0.13 -2.15 16 5 C 0.12 2.16 5.22 -4.04 -0.02 2.14 16 6 N -0.59 -12.21 2.46 -176.27 -0.43 -12.65 16 7 C 0.23 5.25 4.67 -5.19 -0.02 5.22 16 8 C -0.54 -13.03 6.86 -34.44 -0.24 -13.27 16 9 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 10 C 0.07 1.64 5.46 -17.82 -0.10 1.55 16 11 N -0.88 -22.50 13.29 55.43 0.74 -21.77 16 12 Si 0.89 18.81 29.54 -169.99 -5.02 13.79 16 13 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 14 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 15 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 16 C 0.57 12.14 7.25 -12.45 -0.09 12.05 16 17 O -0.56 -12.88 16.58 5.29 0.09 -12.79 16 18 C -0.17 -3.52 4.97 -104.79 -0.52 -4.04 16 19 C 0.14 2.75 10.86 -17.14 -0.19 2.56 16 20 N -0.47 -9.17 10.40 -10.71 -0.11 -9.28 16 21 C 0.10 1.87 7.32 -84.80 -0.62 1.25 16 22 C -0.21 -3.04 10.84 -39.54 -0.43 -3.47 16 23 C 0.07 0.87 11.82 -16.79 -0.20 0.68 16 24 N -0.58 -8.57 6.14 -10.66 -0.07 -8.63 16 25 H 0.42 5.44 8.96 -40.82 -0.37 5.07 16 26 C 0.03 0.56 7.27 -83.96 -0.61 -0.05 16 27 C -0.02 -0.44 7.64 -38.80 -0.30 -0.73 16 28 H 0.06 0.78 6.56 -51.93 -0.34 0.44 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 38 H 0.08 1.39 5.78 -51.93 -0.30 1.09 16 39 H 0.03 0.85 8.11 -51.93 -0.42 0.42 16 40 H 0.05 1.11 5.39 -51.93 -0.28 0.83 16 41 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 42 H 0.16 2.71 8.06 -52.49 -0.42 2.28 16 43 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 44 H 0.17 1.33 8.06 -52.48 -0.42 0.90 16 45 H 0.18 3.83 4.80 -52.48 -0.25 3.58 16 LS Contribution 369.07 15.07 5.56 5.56 Total: -1.00 -28.96 369.07 -8.87 -37.83 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -6.58 Total: 10.51 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -3.05 Total: -2.57 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.13 Total: -52.33 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.09 Total: -12.79 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.96 -8.87 -37.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879110264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.240 kcal (2) G-P(sol) polarization free energy of solvation -28.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds