Wall clock time and date at job start Tue Mar 31 2020 11:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46922 * 2 1 4 4 C 1.53003 * 109.47308 * 119.99784 * 2 1 3 5 5 C 1.53004 * 109.47154 * 64.99941 * 4 2 1 6 6 N 1.46501 * 109.46939 * 180.02562 * 5 4 2 7 7 C 1.46502 * 119.99493 * 269.99529 * 6 5 4 8 8 C 1.50696 * 109.47487 * 275.81911 * 7 6 5 9 9 H 1.08002 * 119.99914 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00095 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00392 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99864 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47059 * 90.00340 * 12 10 8 14 14 H 1.48502 * 109.47217 * 210.00172 * 12 10 8 15 15 H 1.48498 * 109.47355 * 329.99925 * 12 10 8 16 16 C 1.34772 * 120.00126 * 90.00115 * 6 5 4 17 17 O 1.21586 * 120.00072 * 4.92650 * 16 6 5 18 18 C 1.47584 * 119.99884 * 184.92188 * 16 6 5 19 19 C 1.40089 * 120.35687 * 131.87326 * 18 16 6 20 20 N 1.31159 * 121.12044 * 180.02562 * 19 18 16 21 21 C 1.33364 * 121.67972 * 359.97438 * 20 19 18 22 22 C 1.41844 * 133.17295 * 179.97438 * 21 20 19 23 23 C 1.34451 * 107.95968 * 180.02562 * 22 21 20 24 24 N 1.36540 * 109.71592 * 0.02562 * 23 22 21 25 25 H 0.97001 * 125.59651 * 180.02562 * 24 23 22 26 26 C 1.37850 * 108.80406 * 0.02562 * 24 23 22 27 27 C 1.38726 * 133.56985 * 179.97438 * 26 24 23 28 28 H 1.09001 * 109.46951 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47387 * 299.99979 * 1 2 3 30 30 H 1.09000 * 109.47581 * 60.00299 * 1 2 3 31 31 H 1.09004 * 109.47069 * 239.99667 * 2 1 3 32 32 H 1.09002 * 109.46512 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.46796 * 299.99460 * 3 2 1 34 34 H 1.08990 * 109.47211 * 60.00412 * 3 2 1 35 35 H 1.09004 * 109.47047 * 304.99926 * 4 2 1 36 36 H 1.09000 * 109.47448 * 185.00303 * 4 2 1 37 37 H 1.09000 * 109.46695 * 60.00192 * 5 4 2 38 38 H 1.09000 * 109.46739 * 299.99907 * 5 4 2 39 39 H 1.08999 * 109.47133 * 35.82568 * 7 6 5 40 40 H 1.09001 * 109.46419 * 155.82238 * 7 6 5 41 41 H 0.96990 * 120.00551 * 180.02562 * 11 10 8 42 42 H 1.07999 * 119.43648 * 0.04559 * 19 18 16 43 43 H 1.08002 * 126.02173 * 0.04445 * 22 21 20 44 44 H 1.08003 * 125.14639 * 180.26706 * 23 22 21 45 45 H 1.08008 * 120.90623 * 0.03892 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1955 1.1881 6 7 2.1231 -2.8859 2.3846 7 6 3.4514 -3.5039 2.3831 8 6 3.3638 -4.8816 1.7787 9 1 2.4138 -5.2589 1.4301 10 6 4.4964 -5.6603 1.6708 11 7 5.6532 -5.2011 2.0957 12 14 4.3879 -7.3678 0.9209 13 1 4.6102 -7.2797 -0.5448 14 1 5.4245 -8.2414 1.5270 15 1 3.0430 -7.9395 1.1842 16 6 1.3500 -2.9525 3.4865 17 8 0.2144 -2.5189 3.4595 18 6 1.8819 -3.5517 4.7259 19 6 1.7366 -2.8892 5.9516 20 7 2.2039 -3.4077 7.0621 21 6 2.8345 -4.5828 7.0752 22 6 3.4250 -5.3558 8.1076 23 6 3.9279 -6.4727 7.5533 24 7 3.6940 -6.4649 6.2081 25 1 3.9587 -7.1595 5.5849 26 6 3.0198 -5.3078 5.8810 27 6 2.5381 -4.7862 4.6892 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6054 -0.2616 2.1370 36 1 3.1263 -0.6443 1.2952 37 1 2.0699 -2.6550 0.3004 38 1 0.5489 -2.2723 1.1422 39 1 4.1361 -2.8922 1.7957 40 1 3.8182 -3.5789 3.4068 41 1 6.4501 -5.7487 2.0195 42 1 1.2310 -1.9354 5.9828 43 1 3.4636 -5.0935 9.1546 44 1 4.4362 -7.2592 8.0912 45 1 2.6643 -5.3200 3.7588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879110264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:43 Heat of formation + Delta-G solvation = 1.500295 kcal Electronic energy + Delta-G solvation = -26670.959311 eV Core-core repulsion = 23073.708878 eV Total energy + Delta-G solvation = -3597.250433 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.65871 -40.93950 -38.58277 -37.73381 -36.55052 -34.55550 -33.88478 -31.23434 -30.88212 -30.10995 -28.83557 -27.99400 -25.35612 -25.05052 -24.68093 -23.37918 -21.70492 -20.90622 -20.47740 -18.93679 -18.70574 -18.24273 -17.46063 -17.15632 -16.73525 -16.35444 -16.20322 -15.84298 -15.59001 -15.20470 -14.58125 -14.56247 -14.47368 -14.35804 -13.97176 -13.92149 -13.66300 -13.42937 -13.36778 -13.16567 -13.08556 -12.85989 -12.74117 -12.64910 -12.26212 -12.11675 -11.96263 -11.60728 -11.53132 -11.42391 -11.23385 -11.09774 -10.62554 -10.29921 -9.54009 -9.39491 -8.97907 -8.24424 -6.40064 -0.21705 0.33117 1.36198 1.41562 1.48961 1.57299 1.89200 2.11572 2.25674 2.40896 2.95385 3.02594 3.35105 3.63395 3.86687 3.95112 3.97280 4.05681 4.08260 4.18668 4.30061 4.43512 4.54073 4.56939 4.69192 4.73837 4.76380 4.81814 4.89340 4.95920 5.03714 5.09803 5.12786 5.13879 5.16766 5.19143 5.32832 5.44574 5.48093 5.51388 5.56861 5.62431 5.80020 5.95422 5.99945 6.48086 6.56611 6.74129 7.00184 7.19705 7.32693 8.80186 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.010279 B = 0.005269 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.463417 B = 5313.232322 C = 7387.952505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.118 4.118 5 C 0.117 3.883 6 N -0.589 5.589 7 C 0.249 3.751 8 C -0.547 4.547 9 H 0.055 0.945 10 C 0.033 3.967 11 N -0.908 5.908 12 Si 0.949 3.051 13 H -0.278 1.278 14 H -0.274 1.274 15 H -0.269 1.269 16 C 0.566 3.434 17 O -0.584 6.584 18 C -0.195 4.195 19 C 0.137 3.863 20 N -0.482 5.482 21 C 0.085 3.915 22 C -0.229 4.229 23 C 0.110 3.890 24 N -0.573 5.573 25 H 0.431 0.569 26 C 0.007 3.993 27 C -0.029 4.029 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.016 0.984 40 H 0.031 0.969 41 H 0.269 0.731 42 H 0.167 0.833 43 H 0.171 0.829 44 H 0.234 0.766 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.652 0.301 3.472 3.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.199 4.199 4 C -0.156 4.156 5 C -0.006 4.006 6 N -0.318 5.318 7 C 0.128 3.872 8 C -0.585 4.585 9 H 0.073 0.927 10 C -0.169 4.169 11 N -0.546 5.546 12 Si 0.774 3.226 13 H -0.204 1.204 14 H -0.199 1.199 15 H -0.194 1.194 16 C 0.354 3.646 17 O -0.467 6.467 18 C -0.202 4.202 19 C -0.033 4.033 20 N -0.191 5.191 21 C -0.046 4.046 22 C -0.254 4.254 23 C -0.022 4.022 24 N -0.175 5.175 25 H 0.271 0.729 26 C -0.102 4.102 27 C -0.056 4.056 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.034 0.966 40 H 0.048 0.952 41 H 0.079 0.921 42 H 0.184 0.816 43 H 0.188 0.812 44 H 0.250 0.750 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.027 0.761 4.200 4.726 hybrid contribution 0.457 -1.463 -1.681 2.275 sum -1.570 -0.702 2.519 3.050 Atomic orbital electron populations 1.21854 0.94766 1.01597 1.01981 1.21045 0.96279 0.96731 0.96878 1.21791 1.00879 0.94965 1.02236 1.21902 1.00461 0.94377 0.98887 1.21535 0.99773 0.92294 0.86949 1.48157 1.18439 1.52892 1.12270 1.19252 0.78313 0.92165 0.97493 1.21538 0.94744 1.00555 1.41633 0.92663 1.25571 0.94577 1.01602 0.95145 1.70035 0.99650 1.38853 1.46059 0.85701 0.78164 0.79818 0.78957 1.20404 1.19905 1.19374 1.18157 0.84562 0.78231 0.83605 1.90660 1.19007 1.51846 1.85195 1.20495 1.06310 0.97936 0.95454 1.22644 0.95641 0.99336 0.85661 1.67211 1.11265 1.11385 1.29204 1.19793 0.99188 0.91745 0.93874 1.20842 1.09028 0.95960 0.99601 1.22867 0.98172 0.99749 0.81394 1.41925 1.48195 1.17790 1.09588 0.72922 1.19099 1.03268 0.91799 0.96038 1.21566 0.91460 0.94668 0.97954 0.93390 0.93294 0.91080 0.90666 0.92848 0.91122 0.92930 0.93125 0.92686 0.90527 0.90778 0.96604 0.95163 0.92135 0.81560 0.81155 0.75020 0.82515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.95 71.98 0.64 -2.87 16 2 C -0.09 -2.30 2.92 -10.79 -0.03 -2.34 16 3 C -0.14 -3.06 9.19 71.98 0.66 -2.40 16 4 C -0.12 -3.82 5.01 30.60 0.15 -3.67 16 5 C 0.12 4.40 5.22 86.38 0.45 4.85 16 6 N -0.59 -25.67 2.46 -829.86 -2.04 -27.71 16 7 C 0.25 11.87 4.67 85.63 0.40 12.27 16 8 C -0.55 -26.89 6.86 25.60 0.18 -26.72 16 9 H 0.06 2.78 7.81 -2.91 -0.02 2.76 16 10 C 0.03 1.61 5.46 84.65 0.46 2.07 16 11 N -0.91 -46.73 13.29 21.45 0.28 -46.44 16 12 Si 0.95 38.31 29.54 68.60 2.03 40.33 16 13 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 14 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 15 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 16 C 0.57 25.42 7.25 86.71 0.63 26.05 16 17 O -0.58 -27.74 16.58 -3.99 -0.07 -27.81 16 18 C -0.20 -8.39 4.97 -19.97 -0.10 -8.49 16 19 C 0.14 5.48 10.86 85.24 0.93 6.40 16 20 N -0.48 -19.00 10.40 -187.78 -1.95 -20.96 16 21 C 0.08 3.10 7.32 40.46 0.30 3.39 16 22 C -0.23 -6.12 10.84 22.30 0.24 -5.88 16 23 C 0.11 2.26 11.82 83.09 0.98 3.24 16 24 N -0.57 -15.73 6.14 -187.65 -1.15 -16.88 16 25 H 0.43 10.12 8.96 -92.71 -0.83 9.29 16 26 C 0.01 0.27 7.27 38.97 0.28 0.56 16 27 C -0.03 -1.21 7.64 22.78 0.17 -1.04 16 28 H 0.05 1.26 6.56 -2.39 -0.02 1.25 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.08 2.86 8.07 -2.39 -0.02 2.84 16 38 H 0.07 2.82 5.78 -2.39 -0.01 2.80 16 39 H 0.02 0.81 8.11 -2.39 -0.02 0.79 16 40 H 0.03 1.55 5.39 -2.39 -0.01 1.54 16 41 H 0.27 13.10 8.31 -92.72 -0.77 12.33 16 42 H 0.17 6.04 8.06 -2.91 -0.02 6.02 16 43 H 0.17 3.66 8.06 -2.91 -0.02 3.63 16 44 H 0.23 1.98 8.06 -2.91 -0.02 1.95 16 45 H 0.16 7.14 4.80 -2.91 -0.01 7.13 16 Total: -1.00 -64.32 369.07 3.62 -60.69 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: 0.18 Total: 33.34 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 6.35 Total: 5.43 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -4.86 Total: -111.99 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.07 Total: -27.81 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.33 kcal Total: -64.32 3.62 -60.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879110264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.192 kcal (2) G-P(sol) polarization free energy of solvation -64.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds