Wall clock time and date at job start Tue Mar 31 2020 10:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50692 * 109.47414 * 2 1 4 4 C 1.38630 * 120.75783 * 90.00169 * 3 2 1 5 5 C 1.38558 * 119.35539 * 180.27871 * 4 3 2 6 6 N 1.31533 * 120.89633 * 359.44607 * 5 4 3 7 7 C 1.32713 * 121.64409 * 0.58898 * 6 5 4 8 8 C 1.48175 * 119.72038 * 179.70113 * 7 6 5 9 9 O 1.21506 * 119.99833 * 179.97438 * 8 7 6 10 10 N 1.34780 * 119.99946 * 359.97438 * 8 7 6 11 11 C 1.46501 * 119.99775 * 180.02562 * 10 8 7 12 12 H 1.08997 * 110.55971 * 32.09312 * 11 10 8 13 13 C 1.54860 * 110.62379 * 269.02184 * 11 10 8 14 14 C 1.55838 * 103.44740 * 241.51060 * 13 11 10 15 15 H 1.08994 * 116.13063 * 159.14598 * 14 13 11 16 16 C 1.55845 * 105.06471 * 288.18064 * 14 13 11 17 17 C 1.54850 * 103.44782 * 71.82442 * 16 14 13 18 18 C 1.55839 * 110.62371 * 155.00219 * 11 10 8 19 19 H 1.09005 * 115.56227 * 318.91832 * 18 11 10 20 20 N 1.50232 * 101.05511 * 85.54927 * 18 11 10 21 21 C 1.36941 * 130.84195 * 233.94711 * 20 18 11 22 22 H 1.07998 * 119.99397 * 359.97438 * 21 20 18 23 23 C 1.38812 * 120.00306 * 179.97438 * 21 20 18 24 24 N 1.31627 * 119.99782 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99965 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46900 * 60.00364 * 25 23 21 27 27 H 1.48504 * 109.46867 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47334 * 299.99725 * 25 23 21 29 29 C 1.38596 * 120.75665 * 270.02688 * 3 2 1 30 30 H 1.09006 * 109.46561 * 299.99974 * 1 2 3 31 31 H 1.09000 * 109.46965 * 59.99907 * 1 2 3 32 32 H 1.09003 * 109.47229 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46580 * 239.99564 * 2 1 3 34 34 H 1.09000 * 109.46965 * 120.00093 * 2 1 3 35 35 H 1.08002 * 120.31909 * 359.97438 * 4 3 2 36 36 H 1.07994 * 119.54956 * 179.72801 * 5 4 3 37 37 H 0.97001 * 119.99817 * 359.97438 * 10 8 7 38 38 H 1.09003 * 110.62340 * 0.02562 * 13 11 10 39 39 H 1.09004 * 110.61856 * 123.02005 * 13 11 10 40 40 H 1.08998 * 110.62291 * 313.33079 * 16 14 13 41 41 H 1.09003 * 110.62224 * 190.31227 * 16 14 13 42 42 H 1.09000 * 110.62374 * 241.51437 * 17 16 14 43 43 H 1.08997 * 110.76465 * 118.55350 * 17 16 14 44 44 H 0.96996 * 119.99557 * 179.97438 * 24 23 21 45 45 H 1.07999 * 120.46581 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2688 2.0891 1.1913 5 6 2.7250 3.3970 1.1574 6 7 2.9460 4.0058 0.0126 7 6 2.7320 3.4020 -1.1497 8 6 2.9889 4.1305 -2.4142 9 8 2.7952 3.5824 -3.4812 10 7 3.4376 5.4010 -2.3808 11 6 3.6911 6.1213 -3.6310 12 1 3.0002 5.7945 -4.4080 13 6 5.1590 5.9269 -4.0846 14 6 5.7358 7.3746 -4.0759 15 1 6.8209 7.4587 -4.0178 16 6 5.0707 8.0829 -5.2944 17 6 3.6029 8.2774 -4.8408 18 6 3.5810 7.6600 -3.4100 19 1 2.7611 7.9857 -2.7698 20 7 4.9694 7.9830 -2.9357 21 6 5.4031 8.6325 -1.8108 22 1 4.6875 9.0065 -1.0936 23 6 6.7624 8.8100 -1.5924 24 7 7.6345 8.3537 -2.4663 25 14 7.3538 9.6965 -0.0582 26 1 6.8896 8.9636 1.1470 27 1 8.8377 9.7551 -0.0615 28 1 6.8046 11.0760 -0.0408 29 6 2.2682 2.0891 -1.1910 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0943 1.5968 2.1366 36 1 2.9060 3.9221 2.0836 37 1 3.5919 5.8386 -1.5290 38 1 5.6981 5.2942 -3.3795 39 1 5.1978 5.5041 -5.0885 40 1 5.1182 7.4490 -6.1798 41 1 5.5447 9.0459 -5.4844 42 1 2.9226 7.7398 -5.5013 43 1 3.3462 9.3361 -4.8062 44 1 8.5843 8.4781 -2.3138 45 1 2.0948 1.5990 -2.1376 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097123774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:17 Heat of formation + Delta-G solvation = 35.674168 kcal Electronic energy + Delta-G solvation = -26373.512594 eV Core-core repulsion = 22777.744051 eV Total energy + Delta-G solvation = -3595.768542 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.63958 -39.45057 -38.08853 -35.24359 -33.71601 -32.48348 -31.45699 -30.55422 -29.07306 -28.79772 -27.73616 -24.98131 -24.35421 -23.94478 -22.35681 -21.17324 -19.78522 -19.70520 -18.65355 -17.42531 -16.97433 -16.81098 -16.03723 -15.51469 -15.11072 -14.88842 -14.75087 -14.16521 -14.11813 -13.89572 -13.84705 -13.45786 -13.37526 -12.82356 -12.64609 -12.12592 -12.00768 -11.79909 -11.78306 -11.31318 -11.22763 -11.08431 -10.91167 -10.85042 -10.49765 -10.32281 -10.09823 -10.04952 -9.86334 -9.72192 -9.54749 -9.26124 -9.20528 -9.11585 -8.92338 -8.39300 -6.90897 -5.70299 -3.09086 0.65655 1.10659 2.94551 3.40517 3.44671 3.45681 3.49021 3.92944 4.21564 4.38768 4.44925 4.57921 4.84418 4.92554 4.99393 5.02815 5.16235 5.18770 5.38682 5.41892 5.52004 5.57226 5.67891 5.68892 5.74258 5.80444 5.87762 5.91635 6.08539 6.09993 6.15781 6.18431 6.34500 6.45992 6.50203 6.53176 6.64916 6.77423 6.86297 6.98817 7.13930 7.35766 7.51349 7.70765 7.82954 8.10658 8.20919 8.61004 9.11492 9.74747 10.55425 11.38866 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015032 B = 0.003753 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.243302 B = 7458.250645 C = 8796.770413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.049 4.049 4 C -0.157 4.157 5 C 0.102 3.898 6 N -0.456 5.456 7 C 0.090 3.910 8 C 0.562 3.438 9 O -0.549 6.549 10 N -0.681 5.681 11 C 0.125 3.875 12 H 0.081 0.919 13 C -0.142 4.142 14 C 0.154 3.846 15 H 0.154 0.846 16 C -0.139 4.139 17 C -0.128 4.128 18 C 0.126 3.874 19 H 0.088 0.912 20 N -0.589 5.589 21 C -0.212 4.212 22 H 0.078 0.922 23 C -0.010 4.010 24 N -0.921 5.921 25 Si 0.915 3.085 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.287 1.287 29 C -0.115 4.115 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.137 0.863 36 H 0.162 0.838 37 H 0.414 0.586 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.254 0.746 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.939 -13.365 4.396 18.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.057 4.057 4 C -0.177 4.177 5 C -0.058 4.058 6 N -0.168 5.168 7 C -0.048 4.048 8 C 0.346 3.654 9 O -0.427 6.427 10 N -0.329 5.329 11 C 0.019 3.981 12 H 0.099 0.901 13 C -0.183 4.183 14 C 0.047 3.953 15 H 0.170 0.830 16 C -0.178 4.178 17 C -0.168 4.168 18 C 0.017 3.983 19 H 0.106 0.894 20 N -0.310 5.310 21 C -0.340 4.340 22 H 0.096 0.904 23 C -0.206 4.206 24 N -0.569 5.569 25 Si 0.746 3.254 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.136 4.136 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.154 0.846 36 H 0.179 0.821 37 H 0.251 0.749 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.501 -12.704 3.804 17.554 hybrid contribution 0.100 -0.205 1.306 1.326 sum -11.401 -12.909 5.110 17.965 Atomic orbital electron populations 1.21754 0.94150 1.02096 1.02508 1.20581 0.96572 0.91548 1.03580 1.20316 0.95981 0.96711 0.92705 1.22223 1.00488 0.96279 0.98696 1.22820 0.94775 0.92066 0.96089 1.67640 1.13289 1.37867 0.97987 1.21350 0.98339 0.92558 0.92555 1.17882 0.78074 0.82338 0.87074 1.90731 1.54123 1.67872 1.29974 1.45915 1.63148 1.12395 1.11446 1.22740 0.97265 0.93382 0.84746 0.90092 1.23458 0.94817 1.00771 0.99235 1.23763 1.00248 0.87210 0.84029 0.82968 1.23068 0.95549 1.00541 0.98668 1.22880 0.97194 0.99930 0.96759 1.23156 0.90183 0.90922 0.94056 0.89383 1.46515 0.98742 1.64344 1.21384 1.18968 0.90970 1.27995 0.96099 0.90418 1.24689 0.95553 1.01577 0.98757 1.69451 1.00982 1.50896 1.35554 0.86134 0.77537 0.79326 0.82386 1.21223 1.21679 1.21328 1.21996 0.97757 0.94389 0.99416 0.92440 0.92238 0.91979 0.90285 0.90411 0.84557 0.82090 0.74909 0.92206 0.92728 0.93314 0.92612 0.93012 0.92422 0.93550 0.83670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.09 -0.63 6.11 -27.89 -0.17 -0.80 16 3 C -0.05 -0.51 5.17 -104.35 -0.54 -1.05 16 4 C -0.16 -1.51 9.82 -39.32 -0.39 -1.90 16 5 C 0.10 1.19 11.18 -17.56 -0.20 1.00 16 6 N -0.46 -7.01 9.54 -9.80 -0.09 -7.10 16 7 C 0.09 1.44 6.75 -83.01 -0.56 0.88 16 8 C 0.56 10.47 7.81 -12.18 -0.10 10.37 16 9 O -0.55 -11.20 15.97 5.36 0.09 -11.12 16 10 N -0.68 -13.02 5.06 -52.23 -0.26 -13.29 16 11 C 0.12 2.45 2.80 -65.43 -0.18 2.26 16 12 H 0.08 1.56 7.23 -51.93 -0.38 1.19 16 13 C -0.14 -3.01 6.23 -24.24 -0.15 -3.16 16 14 C 0.15 3.58 4.72 -62.80 -0.30 3.28 16 15 H 0.15 4.04 5.52 -51.93 -0.29 3.76 16 16 C -0.14 -2.79 6.44 -24.24 -0.16 -2.94 16 17 C -0.13 -2.36 6.44 -24.23 -0.16 -2.52 16 18 C 0.13 2.53 5.06 -62.81 -0.32 2.21 16 19 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 20 N -0.59 -14.28 2.99 -145.82 -0.44 -14.72 16 21 C -0.21 -5.67 10.59 -15.06 -0.16 -5.83 16 22 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 24 N -0.92 -26.17 10.47 55.49 0.58 -25.59 16 25 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 29 C -0.11 -1.52 9.34 -39.05 -0.36 -1.89 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 34 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 35 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.41 8.15 7.99 -40.82 -0.33 7.83 16 38 H 0.06 1.38 7.98 -51.93 -0.41 0.97 16 39 H 0.05 1.07 7.82 -51.93 -0.41 0.66 16 40 H 0.05 0.87 7.82 -51.93 -0.41 0.47 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.05 0.84 7.82 -51.93 -0.41 0.44 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.15 1.87 7.64 -52.49 -0.40 1.47 16 LS Contribution 365.86 15.07 5.51 5.51 Total: -1.00 -30.74 365.86 -9.89 -40.63 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -6.79 Total: 9.97 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -3.46 Total: -1.07 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.21 Total: -60.69 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.74 -9.89 -40.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097123774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.302 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds