Wall clock time and date at job start Tue Mar 31 2020 12:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50696 * 109.47005 * 240.00178 * 2 1 3 5 5 O 1.21278 * 120.00196 * 264.83495 * 4 2 1 6 6 N 1.34775 * 120.00227 * 84.83470 * 4 2 1 7 7 C 1.46508 * 119.99935 * 4.75541 * 6 4 2 8 8 C 1.46499 * 120.00538 * 184.75084 * 6 4 2 9 9 C 1.50698 * 109.46977 * 89.99798 * 8 6 4 10 10 H 1.08000 * 120.00361 * 0.02562 * 9 8 6 11 11 C 1.37879 * 120.00115 * 180.02562 * 9 8 6 12 12 N 1.31516 * 119.99841 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00122 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47174 * 60.00105 * 13 11 9 15 15 H 1.48499 * 109.47186 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47160 * 299.99784 * 13 11 9 17 17 N 1.46897 * 109.46941 * 120.00069 * 2 1 3 18 18 C 1.46898 * 111.00021 * 180.55280 * 17 2 1 19 19 C 1.46901 * 110.99995 * 304.50655 * 17 2 1 20 20 C 1.50707 * 109.47047 * 169.99872 * 19 17 2 21 21 C 1.38360 * 119.84304 * 89.99663 * 20 19 17 22 22 C 1.37947 * 120.14738 * 179.97438 * 21 20 19 23 23 C 1.39630 * 119.84744 * 0.02562 * 22 21 20 24 24 C 1.43205 * 120.14940 * 180.02562 * 23 22 21 25 25 N 8.90189 * 98.98840 * 117.56458 * 2 1 3 26 26 C 1.39632 * 119.70222 * 0.27814 * 23 22 21 27 27 C 1.37947 * 119.83966 * 359.41756 * 26 23 22 28 28 H 1.08999 * 109.47044 * 67.80587 * 1 2 3 29 29 H 1.08992 * 109.47303 * 187.80985 * 1 2 3 30 30 H 1.09002 * 109.47053 * 307.81238 * 1 2 3 31 31 H 1.08991 * 109.47312 * 93.49966 * 7 6 4 32 32 H 1.08996 * 109.47147 * 213.50594 * 7 6 4 33 33 H 1.09005 * 109.46941 * 333.50073 * 7 6 4 34 34 H 1.08994 * 109.47432 * 210.00384 * 8 6 4 35 35 H 1.09000 * 109.47004 * 330.00388 * 8 6 4 36 36 H 0.96997 * 120.00227 * 180.02562 * 12 11 9 37 37 H 1.08994 * 109.47273 * 189.40214 * 18 17 2 38 38 H 1.08999 * 109.47022 * 309.40385 * 18 17 2 39 39 H 1.09003 * 109.46870 * 69.39725 * 18 17 2 40 40 H 1.09001 * 109.47047 * 50.00346 * 19 17 2 41 41 H 1.08998 * 109.47362 * 290.00159 * 19 17 2 42 42 H 1.07994 * 119.92959 * 359.97438 * 21 20 19 43 43 H 1.08007 * 120.07687 * 179.97438 * 22 21 20 44 44 H 1.07993 * 120.08134 * 179.70142 * 26 23 22 45 45 H 1.07999 * 119.92413 * 180.27711 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3236 -1.8864 -1.1753 6 7 2.1579 -0.0388 -2.3922 7 6 1.9063 1.4038 -2.4353 8 6 2.5461 -0.7514 -3.6120 9 6 1.3107 -1.2432 -4.3211 10 1 0.3340 -1.0445 -3.9051 11 6 1.4272 -1.9468 -5.5011 12 7 2.6164 -2.1883 -6.0080 13 14 -0.1042 -2.5559 -6.3805 14 1 -0.9640 -1.3985 -6.7364 15 1 0.2892 -3.2782 -7.6169 16 1 -0.8553 -3.4745 -5.4878 17 7 2.0197 -0.6925 1.1994 18 6 3.4881 -0.7007 1.2400 19 6 1.4626 -0.0914 2.4186 20 6 1.7837 -0.9672 3.6023 21 6 2.9534 -0.7632 4.3126 22 6 3.2532 -1.5608 5.3975 23 6 2.3734 -2.5761 5.7778 24 6 2.6780 -3.4076 6.9033 25 7 2.9208 -4.0687 7.7945 26 6 1.1978 -2.7805 5.0526 27 6 0.9074 -1.9715 3.9737 28 1 -0.3633 0.3882 -0.9515 29 1 -0.3633 -1.0180 0.1396 30 1 -0.3633 0.6301 0.8119 31 1 2.8447 1.9406 -2.2974 32 1 1.4746 1.6687 -3.4005 33 1 1.2120 1.6755 -1.6401 34 1 3.0969 -0.0766 -4.2673 35 1 3.1777 -1.6006 -3.3513 36 1 2.6984 -2.6830 -6.8383 37 1 3.8257 -1.3576 2.0416 38 1 3.8759 -1.0611 0.2872 39 1 3.8521 0.3106 1.4213 40 1 0.3812 0.0002 2.3171 41 1 1.8984 0.8963 2.5686 42 1 3.6332 0.0222 4.0171 43 1 4.1669 -1.4008 5.9509 44 1 0.5154 -3.5672 5.3385 45 1 -0.0037 -2.1255 3.4146 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073615708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:03 Heat of formation + Delta-G solvation = 36.477278 kcal Electronic energy + Delta-G solvation = -25662.358432 eV Core-core repulsion = 22066.624715 eV Total energy + Delta-G solvation = -3595.733717 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.17591 -39.35909 -37.23277 -36.36787 -34.76953 -32.85858 -32.33026 -31.45808 -30.68735 -28.06245 -27.43181 -25.86135 -24.78180 -23.88699 -23.02825 -22.36402 -20.84116 -19.21315 -18.32015 -16.83763 -16.57504 -16.28109 -15.90157 -15.43017 -15.18904 -14.80050 -14.77398 -14.36895 -14.22584 -14.05512 -13.83874 -13.59189 -13.32168 -13.05658 -12.94356 -12.66037 -12.45149 -12.20108 -12.14193 -12.04942 -11.83398 -11.76870 -11.54293 -11.32680 -11.25273 -11.13085 -11.10228 -10.90386 -10.56820 -10.16660 -9.64847 -9.31338 -9.10909 -8.85682 -8.44206 -8.22902 -7.63476 -6.05126 -4.10188 0.45126 1.05234 2.38845 2.63259 3.30743 3.35130 3.35952 3.39825 3.49390 3.60551 3.78617 4.18797 4.43421 4.48080 4.51009 4.57073 4.90681 4.99139 5.03165 5.18364 5.23118 5.23797 5.29554 5.29701 5.45586 5.52904 5.57533 5.61602 5.69360 5.74524 5.82568 5.88620 5.89830 5.98552 6.14160 6.15034 6.26297 6.30732 6.50262 6.86743 7.00622 7.11235 7.19896 7.44048 7.53588 7.91376 8.22285 8.41368 8.89425 9.11281 9.55056 11.02867 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021109 B = 0.002608 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.122034 B =10732.245605 C =11129.498369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.064 3.936 3 H 0.057 0.943 4 C 0.511 3.489 5 O -0.521 6.521 6 N -0.605 5.605 7 C 0.081 3.919 8 C 0.246 3.754 9 C -0.527 4.527 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.512 5.512 18 C 0.020 3.980 19 C 0.082 3.918 20 C -0.039 4.039 21 C -0.115 4.115 22 C -0.071 4.071 23 C -0.037 4.037 24 C 0.258 3.742 25 N -0.425 5.425 26 C -0.069 4.069 27 C -0.097 4.097 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.031 0.969 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.021 0.979 40 H 0.094 0.906 41 H 0.046 0.954 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.408 9.668 19.358 21.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.048 4.048 3 H 0.074 0.926 4 C 0.296 3.704 5 O -0.396 6.396 6 N -0.338 5.338 7 C -0.064 4.064 8 C 0.127 3.873 9 C -0.566 4.566 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.201 1.201 17 N -0.236 5.236 18 C -0.128 4.128 19 C -0.045 4.045 20 C -0.041 4.041 21 C -0.133 4.133 22 C -0.091 4.091 23 C -0.040 4.040 24 C -0.057 4.057 25 N -0.100 5.100 26 C -0.090 4.090 27 C -0.115 4.115 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.040 0.960 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.150 0.850 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.923 7.434 20.539 21.927 hybrid contribution -0.577 0.792 -0.983 1.389 sum -2.500 8.226 19.555 21.362 Atomic orbital electron populations 1.21826 0.92307 1.03600 1.02335 1.21703 0.97213 0.95768 0.90083 0.92553 1.19998 0.79108 0.87491 0.83824 1.90679 1.48803 1.15645 1.84456 1.48168 1.67525 1.07921 1.10197 1.21685 0.99709 0.82154 1.02803 1.19264 0.96157 0.92510 0.79339 1.21385 0.92972 1.35458 1.06759 0.92528 1.24939 0.96203 0.95766 0.97195 1.69920 1.22228 1.40543 1.20654 0.86566 0.83039 0.78994 0.78864 1.20272 1.21191 1.20136 1.61716 1.08641 1.53575 0.99676 1.22522 0.86695 0.99299 1.04243 1.21269 1.01564 0.94172 0.87533 1.20027 0.93772 0.95506 0.94749 1.21025 0.96876 1.00181 0.95248 1.21107 0.98235 0.93361 0.96424 1.15999 0.97801 0.96924 0.93303 1.25784 0.93595 0.93292 0.93034 1.81254 1.07998 1.09562 1.11179 1.21184 0.94899 0.98629 0.94240 1.21014 1.00339 0.94210 0.95952 0.91156 0.90701 0.92011 0.93882 0.90832 0.92331 0.95110 0.93784 0.92651 0.91005 0.90186 0.96046 0.88822 0.93598 0.85149 0.85123 0.84989 0.84583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.27 37.16 0.31 -1.41 16 2 C 0.06 0.89 1.62 -68.87 -0.11 0.78 16 3 H 0.06 0.67 6.64 -51.93 -0.34 0.33 16 4 C 0.51 10.12 5.79 -10.99 -0.06 10.05 16 5 O -0.52 -12.74 15.04 5.56 0.08 -12.66 16 6 N -0.60 -12.32 2.86 -182.96 -0.52 -12.85 16 7 C 0.08 1.21 10.06 59.85 0.60 1.81 16 8 C 0.25 6.32 5.21 -5.19 -0.03 6.29 16 9 C -0.53 -14.64 9.39 -34.44 -0.32 -14.96 16 10 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 13 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 N -0.51 -6.59 4.33 -237.73 -1.03 -7.62 16 18 C 0.02 0.26 8.71 60.06 0.52 0.78 16 19 C 0.08 0.73 4.86 -4.97 -0.02 0.70 16 20 C -0.04 -0.33 4.89 -104.53 -0.51 -0.84 16 21 C -0.11 -0.85 8.08 -39.64 -0.32 -1.17 16 22 C -0.07 -0.52 9.76 -39.17 -0.38 -0.90 16 23 C -0.04 -0.31 5.73 -106.93 -0.61 -0.92 16 24 C 0.26 2.62 15.33 -22.47 -0.34 2.28 16 25 N -0.42 -5.30 18.54 41.84 0.78 -4.52 16 26 C -0.07 -0.54 9.76 -39.17 -0.38 -0.92 16 27 C -0.10 -0.79 9.68 -39.64 -0.38 -1.17 16 28 H 0.07 0.89 7.47 -51.93 -0.39 0.50 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.53 6.59 -51.93 -0.34 0.19 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 33 H 0.06 0.70 5.33 -51.93 -0.28 0.42 16 34 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.04 1.28 7.36 -51.93 -0.38 0.90 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.07 0.84 6.52 -51.93 -0.34 0.50 16 38 H 0.08 1.30 6.15 -51.93 -0.32 0.98 16 39 H 0.02 0.22 8.07 -51.93 -0.42 -0.20 16 40 H 0.09 0.73 5.80 -51.93 -0.30 0.43 16 41 H 0.05 0.35 8.01 -51.93 -0.42 -0.07 16 42 H 0.13 0.78 8.03 -52.49 -0.42 0.36 16 43 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 44 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 376.22 15.07 5.67 5.67 Total: -1.00 -34.16 376.22 -7.91 -42.07 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -6.45 Total: -3.04 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -2.15 Total: 2.02 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.04 Total: -50.60 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.08 Total: -12.66 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.16 -7.91 -42.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073615708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.548 kcal (2) G-P(sol) polarization free energy of solvation -34.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds