Wall clock time and date at job start Tue Mar 31 2020 12:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50696 * 109.47005 * 240.00178 * 2 1 3 5 5 O 1.21278 * 120.00196 * 264.83495 * 4 2 1 6 6 N 1.34775 * 120.00227 * 84.83470 * 4 2 1 7 7 C 1.46508 * 119.99935 * 4.75541 * 6 4 2 8 8 C 1.46499 * 120.00538 * 184.75084 * 6 4 2 9 9 C 1.50698 * 109.46977 * 89.99798 * 8 6 4 10 10 H 1.08000 * 120.00361 * 0.02562 * 9 8 6 11 11 C 1.37879 * 120.00115 * 180.02562 * 9 8 6 12 12 N 1.31516 * 119.99841 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00122 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47174 * 60.00105 * 13 11 9 15 15 H 1.48499 * 109.47186 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47160 * 299.99784 * 13 11 9 17 17 N 1.46897 * 109.46941 * 120.00069 * 2 1 3 18 18 C 1.46898 * 111.00021 * 180.55280 * 17 2 1 19 19 C 1.46901 * 110.99995 * 304.50655 * 17 2 1 20 20 C 1.50707 * 109.47047 * 169.99872 * 19 17 2 21 21 C 1.38360 * 119.84304 * 89.99663 * 20 19 17 22 22 C 1.37947 * 120.14738 * 179.97438 * 21 20 19 23 23 C 1.39630 * 119.84744 * 0.02562 * 22 21 20 24 24 C 1.43205 * 120.14940 * 180.02562 * 23 22 21 25 25 N 8.90189 * 98.98840 * 117.56458 * 2 1 3 26 26 C 1.39632 * 119.70222 * 0.27814 * 23 22 21 27 27 C 1.37947 * 119.83966 * 359.41756 * 26 23 22 28 28 H 1.08999 * 109.47044 * 67.80587 * 1 2 3 29 29 H 1.08992 * 109.47303 * 187.80985 * 1 2 3 30 30 H 1.09002 * 109.47053 * 307.81238 * 1 2 3 31 31 H 1.08991 * 109.47312 * 93.49966 * 7 6 4 32 32 H 1.08996 * 109.47147 * 213.50594 * 7 6 4 33 33 H 1.09005 * 109.46941 * 333.50073 * 7 6 4 34 34 H 1.08994 * 109.47432 * 210.00384 * 8 6 4 35 35 H 1.09000 * 109.47004 * 330.00388 * 8 6 4 36 36 H 0.96997 * 120.00227 * 180.02562 * 12 11 9 37 37 H 1.08994 * 109.47273 * 189.40214 * 18 17 2 38 38 H 1.08999 * 109.47022 * 309.40385 * 18 17 2 39 39 H 1.09003 * 109.46870 * 69.39725 * 18 17 2 40 40 H 1.09001 * 109.47047 * 50.00346 * 19 17 2 41 41 H 1.08998 * 109.47362 * 290.00159 * 19 17 2 42 42 H 1.07994 * 119.92959 * 359.97438 * 21 20 19 43 43 H 1.08007 * 120.07687 * 179.97438 * 22 21 20 44 44 H 1.07993 * 120.08134 * 179.70142 * 26 23 22 45 45 H 1.07999 * 119.92413 * 180.27711 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3236 -1.8864 -1.1753 6 7 2.1579 -0.0388 -2.3922 7 6 1.9063 1.4038 -2.4353 8 6 2.5461 -0.7514 -3.6120 9 6 1.3107 -1.2432 -4.3211 10 1 0.3340 -1.0445 -3.9051 11 6 1.4272 -1.9468 -5.5011 12 7 2.6164 -2.1883 -6.0080 13 14 -0.1042 -2.5559 -6.3805 14 1 -0.9640 -1.3985 -6.7364 15 1 0.2892 -3.2782 -7.6169 16 1 -0.8553 -3.4745 -5.4878 17 7 2.0197 -0.6925 1.1994 18 6 3.4881 -0.7007 1.2400 19 6 1.4626 -0.0914 2.4186 20 6 1.7837 -0.9672 3.6023 21 6 2.9534 -0.7632 4.3126 22 6 3.2532 -1.5608 5.3975 23 6 2.3734 -2.5761 5.7778 24 6 2.6780 -3.4076 6.9033 25 7 2.9208 -4.0687 7.7945 26 6 1.1978 -2.7805 5.0526 27 6 0.9074 -1.9715 3.9737 28 1 -0.3633 0.3882 -0.9515 29 1 -0.3633 -1.0180 0.1396 30 1 -0.3633 0.6301 0.8119 31 1 2.8447 1.9406 -2.2974 32 1 1.4746 1.6687 -3.4005 33 1 1.2120 1.6755 -1.6401 34 1 3.0969 -0.0766 -4.2673 35 1 3.1777 -1.6006 -3.3513 36 1 2.6984 -2.6830 -6.8383 37 1 3.8257 -1.3576 2.0416 38 1 3.8759 -1.0611 0.2872 39 1 3.8521 0.3106 1.4213 40 1 0.3812 0.0002 2.3171 41 1 1.8984 0.8963 2.5686 42 1 3.6332 0.0222 4.0171 43 1 4.1669 -1.4008 5.9509 44 1 0.5154 -3.5672 5.3385 45 1 -0.0037 -2.1255 3.4146 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073615708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:02 Heat of formation + Delta-G solvation = 14.403977 kcal Electronic energy + Delta-G solvation = -25663.315602 eV Core-core repulsion = 22066.624715 eV Total energy + Delta-G solvation = -3596.690887 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.17461 -40.39183 -38.25156 -37.30043 -36.45998 -34.74090 -33.33953 -32.07230 -31.63012 -29.76935 -28.37597 -27.29569 -25.83551 -25.36289 -23.61659 -23.60934 -21.85814 -19.87263 -19.72026 -18.64427 -18.12682 -17.40201 -16.77952 -16.55475 -16.45762 -16.06848 -15.64217 -15.53092 -15.44260 -15.01278 -14.73477 -14.54118 -14.33207 -14.05083 -13.93295 -13.88117 -13.75844 -13.43615 -13.31010 -13.20897 -13.05890 -12.97553 -12.74973 -12.58174 -12.54705 -12.40834 -12.28573 -12.15803 -12.00784 -11.80459 -11.68488 -10.62143 -10.39579 -9.87966 -9.75694 -9.36403 -9.12571 -8.19947 -6.34959 -0.20031 0.49006 1.38290 1.42692 1.49745 1.59541 1.86530 1.93072 2.30956 2.45038 2.84553 2.90039 3.09480 3.21613 3.71502 3.84715 3.93572 4.03710 4.15126 4.20995 4.33791 4.43260 4.44573 4.49945 4.59771 4.72057 4.74883 4.76025 4.81990 4.85147 4.96222 4.99722 5.05870 5.11787 5.14145 5.26469 5.28828 5.36335 5.39854 5.58954 5.66176 5.85861 5.92289 6.01769 6.09048 6.18158 6.42565 6.73775 6.87078 7.31762 7.58825 8.86757 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021109 B = 0.002608 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.122034 B =10732.245605 C =11129.498369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.078 3.922 3 H 0.089 0.911 4 C 0.501 3.499 5 O -0.581 6.581 6 N -0.614 5.614 7 C 0.076 3.924 8 C 0.261 3.739 9 C -0.540 4.540 10 H 0.056 0.944 11 C 0.005 3.995 12 N -0.930 5.930 13 Si 0.967 3.033 14 H -0.258 1.258 15 H -0.281 1.281 16 H -0.277 1.277 17 N -0.534 5.534 18 C 0.026 3.974 19 C 0.084 3.916 20 C -0.047 4.047 21 C -0.114 4.114 22 C -0.068 4.068 23 C -0.049 4.049 24 C 0.281 3.719 25 N -0.472 5.472 26 C -0.070 4.070 27 C -0.105 4.105 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.020 0.980 35 H -0.005 1.005 36 H 0.266 0.734 37 H 0.078 0.922 38 H 0.034 0.966 39 H 0.049 0.951 40 H 0.108 0.892 41 H 0.071 0.929 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.140 12.153 20.466 24.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 H 0.106 0.894 4 C 0.289 3.711 5 O -0.460 6.460 6 N -0.346 5.346 7 C -0.066 4.066 8 C 0.139 3.861 9 C -0.578 4.578 10 H 0.074 0.926 11 C -0.193 4.193 12 N -0.570 5.570 13 Si 0.791 3.209 14 H -0.183 1.183 15 H -0.206 1.206 16 H -0.202 1.202 17 N -0.260 5.260 18 C -0.121 4.121 19 C -0.042 4.042 20 C -0.048 4.048 21 C -0.132 4.132 22 C -0.088 4.088 23 C -0.052 4.052 24 C -0.034 4.034 25 N -0.148 5.148 26 C -0.091 4.091 27 C -0.124 4.124 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.038 0.962 35 H 0.013 0.987 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.126 0.874 41 H 0.089 0.911 42 H 0.167 0.833 43 H 0.165 0.835 44 H 0.160 0.840 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.671 9.981 21.671 24.140 hybrid contribution 0.014 0.038 -1.311 1.311 sum -3.656 10.019 20.361 22.985 Atomic orbital electron populations 1.21862 0.90577 1.03424 1.03864 1.21601 0.98207 0.96094 0.87404 0.89401 1.21196 0.77574 0.87117 0.85184 1.90639 1.51189 1.18618 1.85572 1.48190 1.67418 1.10105 1.08894 1.21975 1.01917 0.78762 1.03985 1.18689 0.94819 0.91213 0.81347 1.21681 0.93430 1.35627 1.07101 0.92573 1.25885 0.99480 0.95857 0.98121 1.70052 1.24507 1.41284 1.21153 0.85479 0.79101 0.78839 0.77480 1.18252 1.20626 1.20246 1.61612 1.08624 1.54998 1.00741 1.22398 0.87037 1.00806 1.01907 1.21367 1.02351 0.94975 0.85488 1.20140 0.94221 0.95629 0.94844 1.21235 0.96758 1.00432 0.94816 1.21322 0.98471 0.92617 0.96393 1.16111 0.98612 0.97407 0.93111 1.26034 0.92278 0.92437 0.92612 1.81270 1.09610 1.11144 1.12755 1.21329 0.94872 0.98834 0.94043 1.21170 1.00831 0.94290 0.96066 0.91745 0.92726 0.87384 0.91606 0.91619 0.88380 0.96186 0.98731 0.92491 0.90373 0.94747 0.93266 0.87409 0.91128 0.83253 0.83488 0.83961 0.83903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.27 71.98 0.60 -2.31 16 2 C 0.08 1.97 1.62 44.17 0.07 2.05 16 3 H 0.09 1.68 6.64 -2.39 -0.02 1.66 16 4 C 0.50 19.99 5.79 87.66 0.51 20.50 16 5 O -0.58 -29.85 15.04 -3.02 -0.05 -29.90 16 6 N -0.61 -25.21 2.86 -851.14 -2.43 -27.64 16 7 C 0.08 2.11 10.06 127.77 1.29 3.39 16 8 C 0.26 14.01 5.21 85.63 0.45 14.46 16 9 C -0.54 -30.74 9.39 25.60 0.24 -30.50 16 10 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 11 C 0.01 0.31 5.46 84.65 0.46 0.77 16 12 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 13 Si 0.97 44.48 29.54 68.60 2.03 46.50 16 14 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 17 N -0.53 -12.52 4.33 -906.04 -3.92 -16.44 16 18 C 0.03 0.64 8.71 127.69 1.11 1.75 16 19 C 0.08 1.16 4.86 85.56 0.42 1.57 16 20 C -0.05 -0.65 4.89 -19.80 -0.10 -0.75 16 21 C -0.11 -1.34 8.08 22.23 0.18 -1.16 16 22 C -0.07 -0.83 9.76 22.54 0.22 -0.61 16 23 C -0.05 -0.74 5.73 -21.36 -0.12 -0.87 16 24 C 0.28 5.53 15.33 88.33 1.35 6.88 16 25 N -0.47 -11.77 18.54 19.01 0.35 -11.41 16 26 C -0.07 -0.99 9.76 22.54 0.22 -0.77 16 27 C -0.11 -1.49 9.68 22.23 0.22 -1.28 16 28 H 0.06 1.43 7.47 -2.39 -0.02 1.41 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.11 1.26 6.59 -2.39 -0.02 1.24 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.94 8.10 -2.39 -0.02 1.92 16 33 H 0.10 1.94 5.33 -2.38 -0.01 1.93 16 34 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 35 H -0.01 -0.34 7.36 -2.39 -0.02 -0.36 16 36 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 37 H 0.08 1.73 6.52 -2.39 -0.02 1.71 16 38 H 0.03 1.14 6.15 -2.39 -0.01 1.13 16 39 H 0.05 0.88 8.07 -2.39 -0.02 0.86 16 40 H 0.11 1.17 5.80 -2.39 -0.01 1.16 16 41 H 0.07 0.67 8.01 -2.39 -0.02 0.65 16 42 H 0.15 1.17 8.03 -2.91 -0.02 1.15 16 43 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 44 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 45 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -79.93 376.22 4.36 -75.57 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 0.99 Total: 6.32 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 7.11 Total: 13.12 kcal Atomic # 7 Polarization: -105.90 SS G_CDS: -5.72 Total: -111.62 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.05 Total: -29.90 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -79.93 4.36 -75.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073615708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.970 kcal (2) G-P(sol) polarization free energy of solvation -79.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds