Wall clock time and date at job start Tue Mar 31 2020 10:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50706 * 120.00085 * 2 1 4 4 N 1.46900 * 109.47319 * 125.14903 * 3 2 1 5 5 C 1.46905 * 110.99642 * 75.76225 * 4 3 2 6 6 C 1.50701 * 109.46665 * 199.63531 * 5 4 3 7 7 H 1.07999 * 120.00309 * 355.27588 * 6 5 4 8 8 C 1.37880 * 119.99715 * 175.27018 * 6 5 4 9 9 N 1.31513 * 120.00077 * 179.72935 * 8 6 5 10 10 Si 1.86802 * 119.99943 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47127 * 90.00014 * 10 8 6 12 12 H 1.48498 * 109.47023 * 209.99989 * 10 8 6 13 13 H 1.48500 * 109.47258 * 330.00290 * 10 8 6 14 14 C 1.46895 * 110.99907 * 199.71460 * 4 3 2 15 15 N 1.46507 * 109.46759 * 81.05094 * 14 4 3 16 16 C 1.46768 * 124.34560 * 269.71801 * 15 14 4 17 17 C 1.54301 * 105.56140 * 196.88405 * 16 15 14 18 18 H 1.09004 * 110.76959 * 93.02024 * 17 16 15 19 19 C 1.50696 * 111.11921 * 216.70712 * 17 16 15 20 20 C 1.38230 * 119.61433 * 78.74921 * 19 17 16 21 21 C 1.38633 * 119.15909 * 179.71126 * 20 19 17 22 22 C 1.38670 * 118.42334 * 0.54772 * 21 20 19 23 23 C 1.38184 * 119.16091 * 359.73678 * 22 21 20 24 24 N 1.31849 * 119.62386 * 259.01841 * 19 17 16 25 25 C 1.54626 * 101.84704 * 334.94178 * 17 16 15 26 26 C 1.34418 * 124.35404 * 90.02344 * 15 14 4 27 27 O 1.21285 * 124.93871 * 359.56771 * 26 15 14 28 28 H 1.07999 * 120.00505 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.99798 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.00505 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47043 * 5.14730 * 3 2 1 32 32 H 1.09000 * 109.47006 * 245.15072 * 3 2 1 33 33 H 1.09002 * 109.46910 * 79.64377 * 5 4 3 34 34 H 1.08992 * 109.47308 * 319.63925 * 5 4 3 35 35 H 0.97001 * 119.99978 * 179.97438 * 9 8 6 36 36 H 1.08996 * 109.47159 * 201.04259 * 14 4 3 37 37 H 1.08993 * 109.47435 * 321.05087 * 14 4 3 38 38 H 1.08994 * 110.24653 * 316.02100 * 16 15 14 39 39 H 1.09007 * 110.23949 * 78.02040 * 16 15 14 40 40 H 1.08004 * 120.42169 * 359.97438 * 20 19 17 41 41 H 1.08004 * 120.78529 * 180.25698 * 21 20 19 42 42 H 1.07997 * 120.42023 * 179.75201 * 22 21 20 43 43 H 1.08001 * 119.62116 * 179.97438 * 23 22 21 44 44 H 1.08997 * 110.48716 * 265.90185 * 25 17 16 45 45 H 1.09004 * 110.59624 * 143.31180 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9988 1.3306 1.1324 5 6 4.1724 0.4884 0.8648 6 6 4.8516 0.1455 2.1656 7 1 4.4976 0.5774 3.0900 8 6 5.9250 -0.7199 2.1757 9 7 6.5212 -1.0150 3.3101 10 14 6.5377 -1.4665 0.5767 11 1 7.5732 -0.5832 -0.0173 12 1 7.1239 -2.8038 0.8475 13 1 5.4032 -1.6060 -0.3712 14 6 3.4004 2.7068 1.4527 15 7 2.3599 3.3427 2.2646 16 6 1.2293 4.1008 1.7160 17 6 0.6701 4.9224 2.8964 18 1 1.1202 5.9148 2.9242 19 6 -0.8324 5.0166 2.8288 20 6 -1.6032 3.9469 3.2440 21 6 -2.9847 4.0460 3.1834 22 6 -3.5416 5.2181 2.6946 23 6 -2.7070 6.2433 2.2921 24 7 -1.3965 6.1162 2.3694 25 6 1.1176 4.0774 4.1115 26 6 2.3212 3.3117 3.6079 27 8 3.1328 2.7510 4.3134 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3587 2.1316 0.0922 32 1 2.6191 1.4038 -0.9325 33 1 4.8684 1.0285 0.2229 34 1 3.8559 -0.4283 0.3674 35 1 7.2761 -1.6241 3.3172 36 1 4.3372 2.6916 2.0097 37 1 3.5357 3.2700 0.5294 38 1 1.5701 4.7641 0.9211 39 1 0.4661 3.4199 1.3389 40 1 -1.1353 3.0469 3.6149 41 1 -3.6122 3.2278 3.5049 42 1 -4.6139 5.3285 2.6295 43 1 -3.1327 7.1593 1.9098 44 1 0.3261 3.3902 4.4106 45 1 1.3969 4.7221 4.9449 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793561663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:40 Heat of formation + Delta-G solvation = 49.184812 kcal Electronic energy + Delta-G solvation = -26422.035277 eV Core-core repulsion = 22826.852600 eV Total energy + Delta-G solvation = -3595.182677 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.92848 -39.65875 -37.15705 -36.11351 -33.62979 -32.99377 -32.72719 -31.93034 -30.04115 -27.86877 -27.52810 -26.09538 -23.99540 -23.72172 -23.18487 -21.11360 -20.82817 -19.21520 -19.04050 -17.45715 -16.99003 -16.72933 -16.24372 -15.77495 -15.58677 -15.09811 -15.00258 -14.49183 -14.39947 -14.02915 -13.79838 -13.63266 -13.40501 -13.25238 -13.12718 -12.70493 -12.57479 -12.22445 -12.19005 -11.86811 -11.77308 -11.65906 -11.22353 -11.13025 -10.71435 -10.68657 -10.28124 -10.14172 -9.80567 -9.71319 -9.44747 -9.26010 -9.17777 -9.11552 -8.51708 -8.42114 -7.49117 -5.95259 -3.93020 0.79210 1.00349 2.58985 3.04728 3.28134 3.30139 3.37663 3.38529 3.52708 3.84630 4.29182 4.46369 4.52846 4.58205 4.65857 4.78563 4.81643 4.86722 4.90561 5.07466 5.25261 5.32285 5.33541 5.38737 5.45121 5.51133 5.55527 5.60278 5.72873 5.73316 5.75740 5.90862 5.94200 6.00670 6.15966 6.23008 6.40234 6.68372 6.71957 6.92342 6.96122 7.09117 7.46311 7.65503 7.70915 7.87270 7.95349 8.64929 8.72974 9.25132 9.64610 11.17937 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018994 B = 0.003546 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.820500 B = 7894.890290 C = 8653.184440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 C 0.075 3.925 4 N -0.534 5.534 5 C 0.167 3.833 6 C -0.508 4.508 7 H 0.090 0.910 8 C 0.069 3.931 9 N -0.896 5.896 10 Si 0.870 3.130 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.298 3.702 15 N -0.609 5.609 16 C 0.116 3.884 17 C -0.051 4.051 18 H 0.109 0.891 19 C 0.144 3.856 20 C -0.165 4.165 21 C -0.071 4.071 22 C -0.178 4.178 23 C 0.100 3.900 24 N -0.480 5.480 25 C -0.153 4.153 26 C 0.520 3.480 27 O -0.501 6.501 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.036 0.964 33 H -0.014 1.014 34 H 0.033 0.967 35 H 0.262 0.738 36 H 0.111 0.889 37 H 0.045 0.955 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.141 0.859 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.155 0.845 44 H 0.106 0.894 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.337 13.620 -5.024 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.137 4.137 3 C -0.053 4.053 4 N -0.260 5.260 5 C 0.041 3.959 6 C -0.546 4.546 7 H 0.108 0.892 8 C -0.132 4.132 9 N -0.535 5.535 10 Si 0.697 3.303 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.193 1.193 14 C 0.088 3.912 15 N -0.345 5.345 16 C -0.008 4.008 17 C -0.071 4.071 18 H 0.127 0.873 19 C 0.006 3.994 20 C -0.185 4.185 21 C -0.097 4.097 22 C -0.198 4.198 23 C -0.057 4.057 24 N -0.189 5.189 25 C -0.193 4.193 26 C 0.305 3.695 27 O -0.374 6.374 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.128 0.872 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.004 0.996 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.129 0.871 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.158 0.842 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.173 0.827 44 H 0.124 0.876 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.353 13.673 -4.467 24.114 hybrid contribution -0.016 -0.994 -1.328 1.659 sum -19.369 12.679 -5.795 23.864 Atomic orbital electron populations 1.23586 0.95702 1.00957 1.04363 1.22947 0.95640 0.98817 0.96285 1.21323 0.95550 0.95451 0.92983 1.61731 1.17610 1.09923 1.36779 1.20209 0.86186 0.91742 0.97797 1.21155 1.12745 1.26972 0.93725 0.89185 1.24902 0.96389 0.96289 0.95641 1.69916 1.22550 1.35790 1.25256 0.86965 0.79370 0.79105 0.84845 1.20389 1.21215 1.19309 1.21795 0.89833 0.86179 0.93411 1.48410 1.26455 1.52827 1.06817 1.21963 0.89258 0.94031 0.95576 1.20911 0.89707 1.00923 0.95535 0.87260 1.20833 0.95298 0.89308 0.93935 1.22095 0.94478 1.00439 1.01485 1.21625 0.94963 0.97618 0.95501 1.22158 1.01493 0.94921 1.01235 1.22741 0.88687 0.98542 0.95740 1.67459 1.13046 1.24616 1.13758 1.22611 0.98588 0.99812 0.98328 1.20550 0.86172 0.80258 0.82482 1.90849 1.42594 1.44067 1.59865 0.89383 0.88914 0.87245 0.91685 0.94581 0.99641 0.94923 0.92800 0.87108 0.93758 0.90294 0.91484 0.84162 0.84669 0.84837 0.82725 0.87579 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.85 14.32 29.02 0.42 -2.43 16 2 C -0.12 -1.93 9.33 -36.02 -0.34 -2.26 16 3 C 0.07 1.23 5.27 -4.97 -0.03 1.21 16 4 N -0.53 -10.95 4.44 -241.43 -1.07 -12.02 16 5 C 0.17 3.98 3.61 -4.97 -0.02 3.96 16 6 C -0.51 -14.77 9.07 -34.44 -0.31 -15.08 16 7 H 0.09 3.00 8.06 -52.49 -0.42 2.58 16 8 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 9 N -0.90 -28.34 13.96 55.43 0.77 -27.56 16 10 Si 0.87 21.56 27.56 -169.99 -4.69 16.87 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.27 -6.31 6.41 56.52 0.36 -5.95 16 14 C 0.30 5.54 5.49 -63.31 -0.35 5.19 16 15 N -0.61 -9.77 3.13 -176.02 -0.55 -10.32 16 16 C 0.12 1.36 6.04 -3.21 -0.02 1.34 16 17 C -0.05 -0.54 3.51 -90.24 -0.32 -0.86 16 18 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 19 C 0.14 1.48 5.80 -82.59 -0.48 1.00 16 20 C -0.17 -1.53 9.01 -39.44 -0.36 -1.89 16 21 C -0.07 -0.54 10.18 -39.28 -0.40 -0.94 16 22 C -0.18 -1.24 10.11 -39.44 -0.40 -1.64 16 23 C 0.10 0.81 11.18 -17.55 -0.20 0.61 16 24 N -0.48 -5.02 10.27 -9.47 -0.10 -5.12 16 25 C -0.15 -1.86 6.29 -26.75 -0.17 -2.03 16 26 C 0.52 9.24 8.02 -10.86 -0.09 9.15 16 27 O -0.50 -11.88 17.60 5.55 0.10 -11.78 16 28 H 0.09 1.08 7.84 -52.49 -0.41 0.67 16 29 H 0.09 1.15 8.06 -52.48 -0.42 0.72 16 30 H 0.11 1.94 7.28 -52.49 -0.38 1.55 16 31 H 0.06 0.94 5.48 -51.93 -0.28 0.65 16 32 H 0.04 0.58 8.00 -51.93 -0.42 0.16 16 33 H -0.01 -0.33 7.66 -51.93 -0.40 -0.72 16 34 H 0.03 0.79 5.54 -51.93 -0.29 0.50 16 35 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.11 2.46 7.03 -51.93 -0.37 2.09 16 37 H 0.04 0.70 7.92 -51.93 -0.41 0.29 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.79 6.77 -51.93 -0.35 0.43 16 40 H 0.14 1.27 6.21 -52.48 -0.33 0.94 16 41 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 42 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 43 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.11 1.18 5.51 -51.93 -0.29 0.89 16 45 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -35.68 368.55 -9.60 -45.28 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.48 Total: 1.81 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -3.14 Total: -2.72 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.95 Total: -55.02 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.10 Total: -11.78 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.69 Total: 16.87 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.68 -9.60 -45.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793561663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.466 kcal (2) G-P(sol) polarization free energy of solvation -35.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds