Wall clock time and date at job start Tue Mar 31 2020 12:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47228 * 2 1 4 4 C 1.52997 * 109.47638 * 120.00492 * 2 1 3 5 5 N 1.46491 * 109.47442 * 174.99853 * 4 2 1 6 6 C 1.46502 * 120.00000 * 269.99748 * 5 4 2 7 7 C 1.36936 * 119.99933 * 90.00276 * 5 4 2 8 8 H 1.07996 * 119.99861 * 339.67141 * 7 5 4 9 9 C 1.38819 * 119.99964 * 159.95782 * 7 5 4 10 10 N 1.31615 * 120.00118 * 344.80372 * 9 7 5 11 11 Si 1.86799 * 119.99761 * 164.80404 * 9 7 5 12 12 H 1.48503 * 109.47126 * 90.00164 * 11 9 7 13 13 H 1.48505 * 109.46876 * 209.99695 * 11 9 7 14 14 H 1.48494 * 109.47288 * 329.99919 * 11 9 7 15 15 N 1.46503 * 109.46799 * 240.00730 * 2 1 3 16 16 C 1.34770 * 120.00668 * 84.99940 * 15 2 1 17 17 O 1.21593 * 119.99507 * 359.97438 * 16 15 2 18 18 C 1.47579 * 120.00634 * 179.97438 * 16 15 2 19 19 C 1.40234 * 119.82655 * 359.72506 * 18 16 15 20 20 C 1.36205 * 120.37614 * 179.75723 * 19 18 16 21 21 C 1.39912 * 119.95709 * 0.51608 * 20 19 18 22 22 C 1.46253 * 133.83644 * 179.76432 * 21 20 19 23 23 C 1.34461 * 107.03359 * 179.97438 * 22 21 20 24 24 N 1.36558 * 109.97333 * 0.02562 * 23 22 21 25 25 C 1.46501 * 125.06597 * 180.02562 * 24 23 22 26 26 C 1.37814 * 109.86461 * 359.97438 * 24 23 22 27 27 C 1.38688 * 133.37900 * 180.02562 * 26 24 23 28 28 H 1.08997 * 109.47136 * 59.99763 * 1 2 3 29 29 H 1.09003 * 109.46703 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46747 * 299.99326 * 1 2 3 31 31 H 1.09006 * 109.46981 * 54.99614 * 4 2 1 32 32 H 1.09004 * 109.46730 * 295.00351 * 4 2 1 33 33 H 1.09000 * 109.47313 * 264.76998 * 6 5 4 34 34 H 1.08994 * 109.47223 * 24.77362 * 6 5 4 35 35 H 1.09008 * 109.46915 * 144.77095 * 6 5 4 36 36 H 0.96996 * 120.00015 * 180.02562 * 10 9 7 37 37 H 0.97002 * 119.99601 * 264.99878 * 15 2 1 38 38 H 1.07999 * 119.81692 * 0.02562 * 19 18 16 39 39 H 1.07998 * 120.02031 * 180.25659 * 20 19 18 40 40 H 1.08005 * 126.48600 * 359.97438 * 22 21 20 41 41 H 1.07995 * 125.00714 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.46932 * 269.99556 * 25 24 23 43 43 H 1.08997 * 109.47245 * 29.99230 * 25 24 23 44 44 H 1.09001 * 109.47424 * 150.00050 * 25 24 23 45 45 H 1.08006 * 120.16179 * 359.95432 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1904 6 6 4.1258 -1.9920 0.5609 7 6 4.2799 0.1647 1.7239 8 1 3.8661 1.1489 1.8862 9 6 5.6041 -0.0940 2.0506 10 7 6.0304 -1.3364 2.1349 11 14 6.7807 1.3210 2.3706 12 1 6.7527 1.6715 3.8134 13 1 8.1570 0.9170 1.9861 14 1 6.3680 2.4995 1.5669 15 7 2.0183 -0.6905 -1.1963 16 6 2.1470 -0.0182 -2.3572 17 8 1.8574 1.1615 -2.4118 18 6 2.6394 -0.7136 -3.5622 19 6 2.9778 -2.0727 -3.4937 20 6 3.4287 -2.7268 -4.6001 21 6 3.5664 -2.0391 -5.8107 22 6 4.0133 -2.4237 -7.1490 23 6 3.9313 -1.3267 -7.9222 24 7 3.4691 -0.2721 -7.1879 25 6 3.2533 1.0821 -7.7034 26 6 3.2348 -0.6720 -5.8901 27 6 2.7716 -0.0152 -4.7599 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6055 -1.7199 1.2950 32 1 1.7517 -0.1584 2.1369 33 1 4.3670 -2.7316 1.3245 34 1 3.4369 -2.4279 -0.1624 35 1 5.0394 -1.6836 0.0524 36 1 6.9556 -1.5171 2.3636 37 1 2.2490 -1.6317 -1.1528 38 1 2.8763 -2.6050 -2.5595 39 1 3.6838 -3.7746 -4.5418 40 1 4.3464 -3.4036 -7.4580 41 1 4.1924 -1.2857 -8.9693 42 1 4.1650 1.6669 -7.5812 43 1 2.9933 1.0313 -8.7607 44 1 2.4412 1.5558 -7.1519 45 1 2.5147 1.0328 -4.8083 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754330384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:17 Heat of formation + Delta-G solvation = 56.006928 kcal Electronic energy + Delta-G solvation = -26262.058039 eV Core-core repulsion = 22667.171191 eV Total energy + Delta-G solvation = -3594.886848 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.40182 -39.45262 -36.89770 -36.18763 -34.05185 -32.97557 -31.44634 -30.49198 -30.27702 -28.77886 -26.41349 -26.16560 -25.59622 -23.72490 -22.21146 -21.62083 -20.56821 -20.23632 -19.71973 -17.58850 -16.87048 -16.71411 -15.97358 -15.57691 -15.52326 -14.99445 -14.59886 -14.28217 -14.07934 -13.77167 -13.59996 -13.34123 -13.29769 -13.05498 -12.96816 -12.78204 -12.58074 -12.10993 -11.99300 -11.84354 -11.42426 -11.29822 -11.21048 -10.95699 -10.78920 -10.61817 -10.57230 -10.14872 -9.98423 -9.81934 -9.71091 -9.45903 -8.62537 -8.42656 -8.20939 -7.71357 -6.73844 -5.69752 -3.12802 0.85673 1.51170 2.50137 2.62896 3.31572 3.41605 3.48455 3.52599 3.68884 4.12736 4.50372 4.54277 4.60922 4.66370 4.91690 4.95953 5.13351 5.21582 5.29234 5.34846 5.43452 5.50386 5.53170 5.59332 5.72102 5.82649 5.83923 5.98411 6.00101 6.12103 6.22613 6.38660 6.49626 6.52457 6.57424 6.61519 6.65975 6.67189 6.83981 7.09420 7.13035 7.14155 7.36929 7.70184 7.84638 8.06004 8.40605 8.72721 9.26035 9.89486 10.36124 11.35448 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013540 B = 0.003654 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.498404 B = 7661.681573 C = 8303.003401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.085 0.915 4 C 0.143 3.857 5 N -0.599 5.599 6 C 0.168 3.832 7 C -0.252 4.252 8 H 0.068 0.932 9 C 0.002 3.998 10 N -0.908 5.908 11 Si 0.901 3.099 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.280 1.280 15 N -0.696 5.696 16 C 0.559 3.441 17 O -0.553 6.553 18 C -0.108 4.108 19 C -0.110 4.110 20 C -0.079 4.079 21 C -0.090 4.090 22 C -0.209 4.209 23 C 0.054 3.946 24 N -0.486 5.486 25 C 0.077 3.923 26 C 0.081 3.919 27 C -0.064 4.064 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.030 0.970 34 H -0.009 1.009 35 H 0.043 0.957 36 H 0.251 0.749 37 H 0.397 0.603 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.148 0.852 41 H 0.168 0.832 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.813 -2.638 -19.328 21.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 H 0.103 0.897 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.024 3.976 7 C -0.381 4.381 8 H 0.086 0.914 9 C -0.196 4.196 10 N -0.554 5.554 11 Si 0.731 3.269 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.206 1.206 15 N -0.347 5.347 16 C 0.346 3.654 17 O -0.432 6.432 18 C -0.112 4.112 19 C -0.130 4.130 20 C -0.097 4.097 21 C -0.095 4.095 22 C -0.234 4.234 23 C -0.072 4.072 24 N -0.169 5.169 25 C -0.065 4.065 26 C -0.024 4.024 27 C -0.085 4.085 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.009 0.991 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.234 0.766 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.165 0.835 41 H 0.185 0.815 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.874 -1.551 -19.424 21.016 hybrid contribution 1.002 0.352 0.096 1.066 sum -6.872 -1.200 -19.327 20.548 Atomic orbital electron populations 1.22127 0.96498 1.01317 1.01772 1.21946 0.92152 0.98994 0.86058 0.89711 1.21054 0.85846 0.97558 0.94109 1.43831 0.99085 1.22816 1.66343 1.20820 0.94149 0.88953 0.93702 1.19167 0.92910 0.90358 1.35691 0.91415 1.24902 0.98420 0.96052 1.00186 1.70068 1.15766 1.16967 1.52570 0.86315 0.80645 0.82062 0.77911 1.21468 1.21637 1.20578 1.45943 1.65657 1.13985 1.09139 1.18072 0.77728 0.86384 0.83242 1.90716 1.51545 1.15606 1.85379 1.19641 1.03867 0.94219 0.93512 1.20785 1.00077 0.93418 0.98686 1.20159 0.99350 0.99667 0.90575 1.19358 1.03086 0.92582 0.94465 1.21697 1.10984 0.98904 0.91855 1.21818 1.01439 0.86473 0.97476 1.43780 1.56137 1.09597 1.07436 1.21971 1.02938 0.81166 1.00427 1.18092 1.04467 0.94317 0.85480 1.20017 0.99434 0.99805 0.89244 0.92893 0.93017 0.91920 0.94090 0.91846 0.95150 0.99100 0.93795 0.93836 0.76584 0.85511 0.85445 0.83478 0.81496 0.91137 0.89930 0.89901 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.48 37.16 0.35 -2.01 16 2 C 0.12 2.12 2.88 -67.93 -0.20 1.93 16 3 H 0.08 1.83 7.58 -51.93 -0.39 1.43 16 4 C 0.14 2.82 5.29 -4.05 -0.02 2.80 16 5 N -0.60 -14.67 2.78 -181.12 -0.50 -15.17 16 6 C 0.17 3.98 8.52 59.85 0.51 4.49 16 7 C -0.25 -6.97 9.67 -15.06 -0.15 -7.12 16 8 H 0.07 1.86 7.87 -52.49 -0.41 1.45 16 9 C 0.00 0.06 5.06 -17.43 -0.09 -0.03 16 10 N -0.91 -26.51 10.66 55.49 0.59 -25.91 16 11 Si 0.90 22.45 29.58 -169.99 -5.03 17.42 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 15 N -0.70 -12.41 4.47 -54.83 -0.25 -12.66 16 16 C 0.56 10.55 7.72 -12.45 -0.10 10.46 16 17 O -0.55 -12.00 15.97 5.28 0.08 -11.91 16 18 C -0.11 -1.77 5.87 -104.95 -0.62 -2.39 16 19 C -0.11 -1.58 9.46 -39.56 -0.37 -1.95 16 20 C -0.08 -1.03 10.03 -39.69 -0.40 -1.43 16 21 C -0.09 -1.21 6.37 -105.05 -0.67 -1.87 16 22 C -0.21 -2.23 11.08 -37.70 -0.42 -2.64 16 23 C 0.05 0.50 11.28 -16.78 -0.19 0.31 16 24 N -0.49 -5.26 3.18 -121.85 -0.39 -5.65 16 25 C 0.08 0.55 11.02 59.85 0.66 1.21 16 26 C 0.08 1.13 6.80 -84.00 -0.57 0.56 16 27 C -0.06 -0.98 9.48 -39.03 -0.37 -1.35 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 32 H 0.06 1.24 8.04 -51.93 -0.42 0.83 16 33 H 0.03 0.78 7.40 -51.93 -0.38 0.40 16 34 H -0.01 -0.18 5.76 -51.93 -0.30 -0.48 16 35 H 0.04 1.15 7.21 -51.92 -0.37 0.78 16 36 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.40 6.50 4.20 -40.82 -0.17 6.33 16 38 H 0.13 1.65 6.36 -52.49 -0.33 1.32 16 39 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 40 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 41 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.37 8.13 -51.93 -0.42 -0.05 16 44 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 45 H 0.13 1.98 7.62 -52.48 -0.40 1.58 16 LS Contribution 369.38 15.07 5.57 5.57 Total: -1.00 -34.21 369.38 -9.10 -43.31 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.54 Total: 4.05 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -2.63 Total: 0.96 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.54 Total: -59.39 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.08 Total: -11.91 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.03 Total: 17.42 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.21 -9.10 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754330384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.313 kcal (2) G-P(sol) polarization free energy of solvation -34.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds