Wall clock time and date at job start Tue Mar 31 2020 10:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46906 * 109.46967 * 2 1 4 4 C 1.46903 * 110.99561 * 288.88011 * 3 2 1 5 5 C 1.50707 * 109.47125 * 297.13541 * 4 3 2 6 6 O 1.21278 * 119.99768 * 2.08796 * 5 4 3 7 7 N 1.34770 * 119.99919 * 182.08847 * 5 4 3 8 8 C 1.46502 * 120.00210 * 179.97438 * 7 5 4 9 9 C 1.50694 * 109.47323 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00063 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99893 * 179.97438 * 9 8 7 12 12 N 1.31518 * 120.00228 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00071 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47394 * 60.00069 * 13 11 9 15 15 H 1.48504 * 109.47160 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47125 * 299.99957 * 13 11 9 17 17 C 1.46895 * 111.00176 * 164.92842 * 3 2 1 18 18 H 1.09001 * 109.47295 * 63.94727 * 17 3 2 19 19 C 1.53004 * 109.47247 * 183.94908 * 17 3 2 20 20 C 1.50705 * 109.47072 * 303.95101 * 17 3 2 21 21 C 1.38363 * 119.84295 * 319.72296 * 20 17 3 22 22 C 1.37952 * 120.14721 * 179.76670 * 21 20 17 23 23 C 1.39633 * 119.84613 * 0.51099 * 22 21 20 24 24 C 1.43202 * 120.15215 * 179.77172 * 23 22 21 25 25 N 7.20643 * 113.44919 * 103.98332 * 2 1 3 26 26 C 1.39635 * 119.69726 * 359.74410 * 23 22 21 27 27 C 1.37941 * 119.85037 * 0.02562 * 26 23 22 28 28 H 1.09000 * 109.47592 * 65.59648 * 1 2 3 29 29 H 1.09002 * 109.47113 * 185.59423 * 1 2 3 30 30 H 1.08998 * 109.47739 * 305.59087 * 1 2 3 31 31 H 1.08999 * 109.47732 * 239.99722 * 2 1 3 32 32 H 1.09001 * 109.47038 * 119.99084 * 2 1 3 33 33 H 1.08998 * 109.47407 * 57.13631 * 4 3 2 34 34 H 1.08996 * 109.47136 * 177.13944 * 4 3 2 35 35 H 0.97006 * 120.00577 * 0.02562 * 7 5 4 36 36 H 1.08999 * 109.47224 * 300.00657 * 8 7 5 37 37 H 1.09001 * 109.46550 * 59.99978 * 8 7 5 38 38 H 0.97001 * 120.00063 * 179.97438 * 12 11 9 39 39 H 1.09000 * 109.46601 * 59.99795 * 19 17 3 40 40 H 1.09003 * 109.46830 * 179.97438 * 19 17 3 41 41 H 1.08993 * 109.47033 * 300.00160 * 19 17 3 42 42 H 1.07999 * 119.92661 * 0.02704 * 21 20 17 43 43 H 1.08003 * 120.07608 * 180.28266 * 22 21 20 44 44 H 1.08003 * 120.07152 * 179.97438 * 26 23 22 45 45 H 1.08002 * 119.92726 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7766 2.0292 -1.2977 5 6 2.5490 1.3053 -2.3704 6 8 3.2043 0.3245 -2.0885 7 7 2.5116 1.7480 -3.6427 8 6 3.2629 1.0447 -4.6854 9 6 3.0538 1.7358 -6.0081 10 1 2.4246 2.6116 -6.0662 11 6 3.6667 1.2506 -7.1439 12 7 4.4334 0.1843 -7.0730 13 14 3.4081 2.1076 -8.7834 14 1 3.8859 3.5105 -8.6894 15 1 4.1696 1.3946 -9.8403 16 1 1.9627 2.0988 -9.1240 17 6 3.4435 1.4401 0.3566 18 1 4.0289 0.9243 -0.4046 19 6 3.8918 2.9004 0.4422 20 6 3.6535 0.7710 1.6906 21 6 2.7372 0.9636 2.7092 22 6 2.9207 0.3504 3.9313 23 6 4.0398 -0.4575 4.1423 24 6 4.2394 -1.0933 5.4098 25 7 4.3976 -1.5975 6.4154 26 6 4.9633 -0.6432 3.1115 27 6 4.7650 -0.0278 1.8929 28 1 -0.3634 0.4246 -0.9358 29 1 -0.3633 -1.0228 0.1002 30 1 -0.3634 0.5981 0.8356 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 0.7120 1.9915 -1.5284 34 1 2.1023 3.0685 -1.2541 35 1 1.9878 2.5327 -3.8682 36 1 4.3239 1.0507 -4.4355 37 1 2.9118 0.0151 -4.7543 38 1 4.8643 -0.1572 -7.8722 39 1 3.3064 3.4161 1.2035 40 1 4.9484 2.9412 0.7073 41 1 3.7399 3.3843 -0.5226 42 1 1.8742 1.5920 2.5460 43 1 2.2023 0.4978 4.7242 44 1 5.8313 -1.2665 3.2682 45 1 5.4782 -0.1709 1.0946 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042742059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:08 Heat of formation + Delta-G solvation = 21.588084 kcal Electronic energy + Delta-G solvation = -25821.069998 eV Core-core repulsion = 22224.690637 eV Total energy + Delta-G solvation = -3596.379361 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.45672 -39.28563 -37.18405 -36.27300 -34.23501 -33.07946 -32.43853 -31.26687 -31.01021 -29.09082 -27.77719 -26.30501 -24.19470 -22.95027 -22.65118 -21.83444 -20.54665 -19.57611 -19.07941 -17.14446 -16.61887 -16.39619 -15.65248 -15.33144 -15.06106 -14.82033 -14.60103 -14.53497 -14.23145 -14.13023 -13.73027 -13.60814 -13.42755 -13.06059 -12.94373 -12.75312 -12.56953 -12.33337 -12.05523 -12.05133 -11.76785 -11.70697 -11.46234 -11.23962 -11.18932 -11.03514 -10.95359 -10.73730 -10.45804 -10.39218 -9.84269 -9.48102 -9.20117 -8.87998 -8.78050 -7.96846 -7.91294 -6.22831 -4.30308 0.56725 1.17094 2.44678 2.74828 3.18967 3.20827 3.26051 3.27129 3.65537 3.68306 3.89861 4.03810 4.32179 4.57384 4.67207 4.70849 5.11852 5.13455 5.18472 5.23895 5.27326 5.36473 5.43436 5.47400 5.53500 5.56990 5.60447 5.69273 5.72129 5.78664 6.00974 6.07031 6.08313 6.10651 6.14870 6.20033 6.37998 6.48147 6.64363 7.00435 7.10339 7.22058 7.25968 7.33939 7.42831 7.58398 7.90057 8.51687 8.68959 8.97877 9.36560 10.87099 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.024613 B = 0.002567 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.329064 B =10906.091914 C =11285.961524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.027 3.973 3 N -0.506 5.506 4 C 0.025 3.975 5 C 0.467 3.533 6 O -0.555 6.555 7 N -0.709 5.709 8 C 0.250 3.750 9 C -0.545 4.545 10 H 0.062 0.938 11 C 0.064 3.936 12 N -0.885 5.885 13 Si 0.904 3.096 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C 0.092 3.908 18 H 0.094 0.906 19 C -0.141 4.141 20 C -0.033 4.033 21 C -0.099 4.099 22 C -0.075 4.075 23 C -0.043 4.043 24 C 0.260 3.740 25 N -0.429 5.429 26 C -0.070 4.070 27 C -0.114 4.114 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.391 0.609 36 H 0.026 0.974 37 H 0.025 0.975 38 H 0.267 0.733 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.142 0.858 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.797 4.621 17.421 18.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 N -0.229 5.229 4 C -0.106 4.106 5 C 0.251 3.749 6 O -0.436 6.436 7 N -0.357 5.357 8 C 0.129 3.871 9 C -0.584 4.584 10 H 0.080 0.920 11 C -0.140 4.140 12 N -0.523 5.523 13 Si 0.731 3.269 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.200 1.200 17 C -0.016 4.016 18 H 0.112 0.888 19 C -0.199 4.199 20 C -0.034 4.034 21 C -0.117 4.117 22 C -0.096 4.096 23 C -0.046 4.046 24 C -0.055 4.055 25 N -0.104 5.104 26 C -0.090 4.090 27 C -0.133 4.133 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.223 0.777 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.160 0.840 43 H 0.147 0.853 44 H 0.148 0.852 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.219 3.261 19.406 20.125 hybrid contribution 0.056 0.468 -2.169 2.220 sum -4.163 3.729 17.237 18.120 Atomic orbital electron populations 1.21766 0.95492 1.01271 1.01723 1.22410 0.95193 0.89142 1.03316 1.62551 1.16074 1.18139 1.26105 1.22375 1.01399 0.99560 0.87302 1.21738 0.82824 0.85601 0.84698 1.90556 1.43940 1.27482 1.81631 1.46633 1.49343 1.31315 1.08413 1.19080 0.91517 0.92624 0.83873 1.21184 1.31151 1.13578 0.92464 0.91951 1.24955 0.94677 0.94937 0.99421 1.69958 1.30264 1.22234 1.29798 0.86476 0.78392 0.79537 0.82526 1.20029 1.21058 1.20043 1.21003 0.90328 0.96673 0.93610 0.88835 1.21870 1.01125 0.94480 1.02410 1.20134 0.93527 0.94402 0.95384 1.21063 0.99761 0.99508 0.91351 1.21176 0.95469 0.95083 0.97828 1.16002 0.98762 1.01994 0.87862 1.25818 0.93478 0.93275 0.92914 1.81242 1.08144 1.09608 1.11451 1.21113 0.97846 0.98199 0.91870 1.21076 0.98154 0.96960 0.97093 0.93089 0.92648 0.92326 0.90950 0.91002 0.87941 0.87936 0.77657 0.95635 0.95664 0.92355 0.91823 0.92059 0.92026 0.84040 0.85281 0.85170 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.83 37.15 0.37 -1.15 16 2 C 0.03 0.33 5.00 -3.82 -0.02 0.31 16 3 N -0.51 -5.80 3.88 -229.47 -0.89 -6.69 16 4 C 0.03 0.30 5.36 -4.97 -0.03 0.28 16 5 C 0.47 8.04 7.11 -10.99 -0.08 7.96 16 6 O -0.55 -11.39 11.66 5.56 0.06 -11.32 16 7 N -0.71 -13.54 5.55 -61.47 -0.34 -13.88 16 8 C 0.25 6.27 5.43 -5.20 -0.03 6.24 16 9 C -0.55 -14.22 9.28 -34.44 -0.32 -14.54 16 10 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -25.40 13.29 55.43 0.74 -24.66 16 13 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 14 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 17 C 0.09 1.07 1.92 -68.86 -0.13 0.94 16 18 H 0.09 1.42 5.37 -51.93 -0.28 1.14 16 19 C -0.14 -1.42 8.93 37.16 0.33 -1.08 16 20 C -0.03 -0.34 3.52 -104.53 -0.37 -0.71 16 21 C -0.10 -0.86 8.27 -39.64 -0.33 -1.19 16 22 C -0.08 -0.61 9.76 -39.17 -0.38 -0.99 16 23 C -0.04 -0.39 5.73 -106.93 -0.61 -1.00 16 24 C 0.26 2.77 15.33 -22.47 -0.34 2.43 16 25 N -0.43 -5.52 18.54 41.84 0.78 -4.74 16 26 C -0.07 -0.61 9.76 -39.17 -0.38 -1.00 16 27 C -0.11 -1.12 9.65 -39.64 -0.38 -1.50 16 28 H 0.05 0.55 6.91 -51.93 -0.36 0.19 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 1.17 5.40 -51.93 -0.28 0.89 16 32 H 0.07 0.87 5.90 -51.93 -0.31 0.56 16 33 H 0.10 1.09 6.67 -51.93 -0.35 0.75 16 34 H 0.10 1.05 6.24 -51.93 -0.32 0.73 16 35 H 0.39 6.35 8.32 -40.82 -0.34 6.01 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.64 6.38 -51.93 -0.33 0.31 16 42 H 0.14 1.15 7.71 -52.49 -0.40 0.75 16 43 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 44 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 45 H 0.13 1.28 8.03 -52.49 -0.42 0.86 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -30.68 371.92 -8.18 -38.87 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.31 Total: 4.95 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -2.80 Total: -3.38 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.28 Total: -49.98 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.06 Total: -11.32 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.68 -8.18 -38.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042742059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.454 kcal (2) G-P(sol) polarization free energy of solvation -30.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds