Wall clock time and date at job start Tue Mar 31 2020 10:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47510 * 2 1 4 4 C 1.46502 * 119.99791 * 270.00313 * 3 2 1 5 5 C 1.50700 * 109.46748 * 269.99084 * 4 3 2 6 6 H 1.08002 * 120.00535 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99900 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00272 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47061 * 60.00078 * 9 7 5 11 11 H 1.48501 * 109.47055 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46848 * 300.00484 * 9 7 5 13 13 C 1.34777 * 119.99769 * 89.99293 * 3 2 1 14 14 O 1.21286 * 119.99458 * 180.02562 * 13 3 2 15 15 C 1.50694 * 120.00346 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.47330 * 179.97438 * 15 13 3 17 17 C 1.46906 * 110.99814 * 293.95439 * 16 15 13 18 18 C 1.46905 * 111.00158 * 170.00077 * 16 15 13 19 19 C 1.50695 * 109.46944 * 189.99717 * 18 16 15 20 20 C 1.38365 * 119.85178 * 269.72089 * 19 18 16 21 21 C 1.37949 * 120.15249 * 179.76466 * 20 19 18 22 22 C 1.39632 * 119.84299 * 0.53701 * 21 20 19 23 23 C 1.43201 * 120.14909 * 179.69700 * 22 21 20 24 24 N 9.65386 * 127.87628 * 223.74991 * 13 1 2 25 25 C 1.39634 * 119.70212 * 359.72145 * 22 21 20 26 26 C 1.37943 * 119.84621 * 359.97438 * 25 22 21 27 27 H 1.09001 * 109.47069 * 60.00365 * 1 2 3 28 28 H 1.09006 * 109.46950 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47134 * 300.00042 * 1 2 3 30 30 H 1.09005 * 109.47603 * 239.99734 * 2 1 3 31 31 H 1.09003 * 109.47151 * 120.00177 * 2 1 3 32 32 H 1.08995 * 109.47145 * 29.99412 * 4 3 2 33 33 H 1.08995 * 109.46869 * 149.99852 * 4 3 2 34 34 H 0.96990 * 120.00003 * 180.02562 * 8 7 5 35 35 H 1.09009 * 109.46871 * 59.99562 * 15 13 3 36 36 H 1.09002 * 109.47358 * 299.99938 * 15 13 3 37 37 H 1.08992 * 109.47459 * 59.99744 * 17 16 15 38 38 H 1.09004 * 109.47040 * 179.97438 * 17 16 15 39 39 H 1.09000 * 109.47033 * 299.99847 * 17 16 15 40 40 H 1.09002 * 109.46783 * 309.99945 * 18 16 15 41 41 H 1.09002 * 109.46955 * 69.99566 * 18 16 15 42 42 H 1.08004 * 119.91808 * 0.02562 * 20 19 18 43 43 H 1.08001 * 120.07670 * 180.25658 * 21 20 19 44 44 H 1.07998 * 120.07700 * 179.97438 * 25 22 21 45 45 H 1.07998 * 119.92640 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0961 7 6 4.1492 2.3895 -2.8779 8 7 3.3492 3.1256 -3.6182 9 14 5.9132 2.0955 -3.4174 10 1 6.1404 0.6387 -3.5946 11 1 6.1608 2.7956 -4.7035 12 1 6.8410 2.6189 -2.3828 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9921 1.3061 2.4723 16 7 2.3107 2.2059 3.5888 17 6 3.7475 2.5095 3.6267 18 6 1.8584 1.6398 4.8668 19 6 1.9760 2.6830 5.9479 20 6 3.1460 2.7884 6.6789 21 6 3.2622 3.7443 7.6667 22 6 2.1915 4.5992 7.9357 23 6 2.3026 5.5896 8.9640 24 7 2.3877 6.3763 9.7793 25 6 1.0117 4.4838 7.1977 26 6 0.9114 3.5277 6.2085 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5817 1.6876 -2.0284 33 1 2.0956 3.1410 -1.1384 34 1 3.6750 3.5154 -4.4444 35 1 2.6226 0.4187 2.5299 36 1 0.9442 1.0115 2.5302 37 1 4.0417 2.9916 2.6945 38 1 3.9557 3.1778 4.4624 39 1 4.3111 1.5849 3.7512 40 1 0.8186 1.3251 4.7770 41 1 2.4774 0.7799 5.1226 42 1 3.9717 2.1234 6.4727 43 1 4.1775 3.8282 8.2338 44 1 0.1797 5.1417 7.4009 45 1 -0.0003 3.4375 5.6367 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052580840.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:28 Heat of formation + Delta-G solvation = 30.944985 kcal Electronic energy + Delta-G solvation = -25388.427974 eV Core-core repulsion = 21792.454359 eV Total energy + Delta-G solvation = -3595.973615 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.06498 -39.20158 -37.18713 -36.28896 -35.16238 -32.83995 -32.16274 -31.42361 -30.10531 -28.65906 -27.52491 -26.55859 -23.99945 -23.03788 -23.00655 -22.36665 -21.19895 -19.21320 -18.32482 -16.77273 -16.38853 -16.10460 -16.06261 -15.56394 -15.17453 -14.83483 -14.72603 -14.35285 -14.19911 -14.11544 -13.81083 -13.60257 -13.33928 -13.13728 -12.98229 -12.74376 -12.57573 -12.34599 -12.01996 -11.96300 -11.82851 -11.63590 -11.37514 -11.33148 -11.24000 -11.13389 -10.92395 -10.71146 -10.52656 -10.11729 -9.64927 -9.30927 -9.10622 -8.91447 -8.43550 -8.18432 -7.64244 -6.04475 -4.09336 0.45212 1.05236 2.38993 2.63598 3.30468 3.35527 3.36615 3.45455 3.47459 3.60713 3.78848 4.25405 4.44076 4.47727 4.52252 4.57404 4.95587 5.01014 5.07169 5.20939 5.25723 5.29565 5.31415 5.35854 5.46891 5.48843 5.61106 5.65192 5.68852 5.72160 5.79080 5.90055 5.98397 6.00628 6.21534 6.26013 6.38105 6.46249 6.50364 6.88411 7.05370 7.13807 7.20170 7.46369 7.56494 7.92192 8.23681 8.44735 8.90574 9.14031 9.55817 11.03468 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017572 B = 0.002654 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.068643 B =10547.935135 C =11380.985336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.507 3.493 14 O -0.523 6.523 15 C 0.037 3.963 16 N -0.516 5.516 17 C 0.014 3.986 18 C 0.085 3.915 19 C -0.040 4.040 20 C -0.114 4.114 21 C -0.070 4.070 22 C -0.036 4.036 23 C 0.258 3.742 24 N -0.425 5.425 25 C -0.069 4.069 26 C -0.097 4.097 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.019 0.981 40 H 0.087 0.913 41 H 0.046 0.954 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.783 -7.712 18.918 21.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.399 6.399 15 C -0.094 4.094 16 N -0.240 5.240 17 C -0.134 4.134 18 C -0.042 4.042 19 C -0.041 4.041 20 C -0.133 4.133 21 C -0.091 4.091 22 C -0.040 4.040 23 C -0.057 4.057 24 N -0.100 5.100 25 C -0.090 4.090 26 C -0.116 4.116 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.037 0.963 40 H 0.105 0.895 41 H 0.065 0.935 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.150 0.850 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.690 -5.325 19.893 21.365 hybrid contribution 1.381 -1.277 -0.655 1.992 sum -4.308 -6.602 19.238 20.791 Atomic orbital electron populations 1.22225 0.96809 1.01333 1.02391 1.21401 0.93503 0.84362 1.02520 1.48265 1.64133 1.13154 1.07706 1.19237 0.96110 0.93669 0.78083 1.21382 0.96959 1.31897 1.06218 0.92660 1.24933 0.97766 0.94962 0.96435 1.69919 1.35701 1.33382 1.14331 0.86581 0.84904 0.78190 0.77858 1.20313 1.21191 1.20207 1.20077 0.78952 0.87096 0.84670 1.90646 1.44788 1.17700 1.86732 1.22113 1.02284 0.94197 0.90840 1.61653 1.18195 1.43536 1.00638 1.22686 0.85907 0.99676 1.05126 1.21182 1.01705 0.93417 0.87910 1.20016 0.93447 0.95983 0.94639 1.21038 0.97692 0.98859 0.95676 1.21115 0.97275 0.93695 0.97011 1.15998 0.96778 0.95608 0.95604 1.25789 0.93654 0.93161 0.93106 1.81263 1.07642 1.10252 1.10820 1.21177 0.95994 0.97601 0.94228 1.21001 0.99421 0.94440 0.96700 0.92001 0.92254 0.93043 0.90014 0.91991 0.95119 0.93879 0.92670 0.92462 0.88520 0.88496 0.91373 0.96284 0.89474 0.93548 0.85073 0.85084 0.84994 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.24 37.15 0.38 -1.70 16 2 C 0.11 1.58 5.93 -4.04 -0.02 1.56 16 3 N -0.60 -12.00 2.46 -175.06 -0.43 -12.43 16 4 C 0.25 6.31 5.16 -5.19 -0.03 6.28 16 5 C -0.53 -14.55 9.39 -34.44 -0.32 -14.88 16 6 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 9 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.51 9.90 7.40 -10.99 -0.08 9.81 16 14 O -0.52 -12.57 13.89 5.55 0.08 -12.50 16 15 C 0.04 0.49 4.00 -4.98 -0.02 0.47 16 16 N -0.52 -6.71 4.49 -245.82 -1.10 -7.81 16 17 C 0.01 0.19 8.87 60.07 0.53 0.72 16 18 C 0.09 0.76 5.11 -4.98 -0.03 0.73 16 19 C -0.04 -0.34 4.89 -104.53 -0.51 -0.85 16 20 C -0.11 -0.88 7.89 -39.64 -0.31 -1.19 16 21 C -0.07 -0.53 9.76 -39.17 -0.38 -0.91 16 22 C -0.04 -0.31 5.73 -106.93 -0.61 -0.92 16 23 C 0.26 2.64 15.33 -22.47 -0.34 2.30 16 24 N -0.42 -5.32 18.54 41.84 0.78 -4.55 16 25 C -0.07 -0.54 9.76 -39.17 -0.38 -0.92 16 26 C -0.10 -0.78 9.68 -39.64 -0.38 -1.17 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.59 7.22 -51.93 -0.38 0.21 16 30 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 31 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 32 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.06 0.69 7.38 -51.92 -0.38 0.31 16 36 H 0.10 1.07 6.98 -51.93 -0.36 0.71 16 37 H 0.10 1.74 5.88 -51.93 -0.31 1.44 16 38 H 0.07 0.83 5.90 -51.93 -0.31 0.52 16 39 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 40 H 0.09 0.64 7.87 -51.93 -0.41 0.23 16 41 H 0.05 0.36 8.06 -51.93 -0.42 -0.06 16 42 H 0.13 0.84 8.00 -52.48 -0.42 0.42 16 43 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 380.12 15.07 5.73 5.73 Total: -1.00 -33.82 380.12 -8.47 -42.29 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -6.62 Total: -2.65 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -2.61 Total: 0.96 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.02 Total: -50.35 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.08 Total: -12.50 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.82 -8.47 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052580840.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.232 kcal (2) G-P(sol) polarization free energy of solvation -33.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds