Wall clock time and date at job start Tue Mar 31 2020 10:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47510 * 2 1 4 4 C 1.46502 * 119.99791 * 270.00313 * 3 2 1 5 5 C 1.50700 * 109.46748 * 269.99084 * 4 3 2 6 6 H 1.08002 * 120.00535 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99900 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00272 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47061 * 60.00078 * 9 7 5 11 11 H 1.48501 * 109.47055 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46848 * 300.00484 * 9 7 5 13 13 C 1.34777 * 119.99769 * 89.99293 * 3 2 1 14 14 O 1.21286 * 119.99458 * 180.02562 * 13 3 2 15 15 C 1.50694 * 120.00346 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.47330 * 179.97438 * 15 13 3 17 17 C 1.46906 * 110.99814 * 293.95439 * 16 15 13 18 18 C 1.46905 * 111.00158 * 170.00077 * 16 15 13 19 19 C 1.50695 * 109.46944 * 189.99717 * 18 16 15 20 20 C 1.38365 * 119.85178 * 269.72089 * 19 18 16 21 21 C 1.37949 * 120.15249 * 179.76466 * 20 19 18 22 22 C 1.39632 * 119.84299 * 0.53701 * 21 20 19 23 23 C 1.43201 * 120.14909 * 179.69700 * 22 21 20 24 24 N 9.65386 * 127.87628 * 223.74991 * 13 1 2 25 25 C 1.39634 * 119.70212 * 359.72145 * 22 21 20 26 26 C 1.37943 * 119.84621 * 359.97438 * 25 22 21 27 27 H 1.09001 * 109.47069 * 60.00365 * 1 2 3 28 28 H 1.09006 * 109.46950 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47134 * 300.00042 * 1 2 3 30 30 H 1.09005 * 109.47603 * 239.99734 * 2 1 3 31 31 H 1.09003 * 109.47151 * 120.00177 * 2 1 3 32 32 H 1.08995 * 109.47145 * 29.99412 * 4 3 2 33 33 H 1.08995 * 109.46869 * 149.99852 * 4 3 2 34 34 H 0.96990 * 120.00003 * 180.02562 * 8 7 5 35 35 H 1.09009 * 109.46871 * 59.99562 * 15 13 3 36 36 H 1.09002 * 109.47358 * 299.99938 * 15 13 3 37 37 H 1.08992 * 109.47459 * 59.99744 * 17 16 15 38 38 H 1.09004 * 109.47040 * 179.97438 * 17 16 15 39 39 H 1.09000 * 109.47033 * 299.99847 * 17 16 15 40 40 H 1.09002 * 109.46783 * 309.99945 * 18 16 15 41 41 H 1.09002 * 109.46955 * 69.99566 * 18 16 15 42 42 H 1.08004 * 119.91808 * 0.02562 * 20 19 18 43 43 H 1.08001 * 120.07670 * 180.25658 * 21 20 19 44 44 H 1.07998 * 120.07700 * 179.97438 * 25 22 21 45 45 H 1.07998 * 119.92640 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0961 7 6 4.1492 2.3895 -2.8779 8 7 3.3492 3.1256 -3.6182 9 14 5.9132 2.0955 -3.4174 10 1 6.1404 0.6387 -3.5946 11 1 6.1608 2.7956 -4.7035 12 1 6.8410 2.6189 -2.3828 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9921 1.3061 2.4723 16 7 2.3107 2.2059 3.5888 17 6 3.7475 2.5095 3.6267 18 6 1.8584 1.6398 4.8668 19 6 1.9760 2.6830 5.9479 20 6 3.1460 2.7884 6.6789 21 6 3.2622 3.7443 7.6667 22 6 2.1915 4.5992 7.9357 23 6 2.3026 5.5896 8.9640 24 7 2.3877 6.3763 9.7793 25 6 1.0117 4.4838 7.1977 26 6 0.9114 3.5277 6.2085 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5817 1.6876 -2.0284 33 1 2.0956 3.1410 -1.1384 34 1 3.6750 3.5154 -4.4444 35 1 2.6226 0.4187 2.5299 36 1 0.9442 1.0115 2.5302 37 1 4.0417 2.9916 2.6945 38 1 3.9557 3.1778 4.4624 39 1 4.3111 1.5849 3.7512 40 1 0.8186 1.3251 4.7770 41 1 2.4774 0.7799 5.1226 42 1 3.9717 2.1234 6.4727 43 1 4.1775 3.8282 8.2338 44 1 0.1797 5.1417 7.4009 45 1 -0.0003 3.4375 5.6367 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052580840.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:27 Heat of formation + Delta-G solvation = 9.655106 kcal Electronic energy + Delta-G solvation = -25389.351172 eV Core-core repulsion = 21792.454359 eV Total energy + Delta-G solvation = -3596.896814 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.95374 -40.38371 -38.14214 -37.26241 -36.65148 -34.87318 -32.94938 -32.00298 -31.54963 -30.00976 -28.36382 -28.15573 -25.31978 -24.37528 -23.66912 -23.61138 -22.08388 -19.88617 -19.75960 -18.58743 -17.97152 -17.30567 -16.81625 -16.59597 -16.48780 -15.97693 -15.77703 -15.45754 -15.35969 -15.01938 -14.80028 -14.56681 -14.39689 -14.30162 -14.00005 -13.88868 -13.71840 -13.54182 -13.25558 -13.14052 -13.02955 -12.78432 -12.68368 -12.58981 -12.47643 -12.40048 -12.14132 -12.07875 -11.86581 -11.76634 -11.67781 -10.61631 -10.42323 -9.87798 -9.77008 -9.33613 -9.13598 -8.19131 -6.33999 -0.20432 0.48369 1.37355 1.41596 1.48720 1.59099 1.88670 1.97720 2.31852 2.45774 2.85273 2.90274 3.09933 3.29248 3.79719 3.85745 3.93768 4.03396 4.16969 4.32395 4.39486 4.42204 4.46367 4.52221 4.58533 4.62843 4.73271 4.78882 4.80582 4.91727 5.00696 5.06184 5.11931 5.13503 5.25466 5.27607 5.30672 5.39309 5.46397 5.62774 5.65567 5.89960 5.93045 6.01569 6.11294 6.19424 6.42237 6.74993 6.93285 7.32872 7.64536 8.87282 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017572 B = 0.002654 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.068643 B =10547.935135 C =11380.985336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.265 3.735 5 C -0.538 4.538 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.965 3.035 10 H -0.259 1.259 11 H -0.281 1.281 12 H -0.277 1.277 13 C 0.494 3.506 14 O -0.580 6.580 15 C 0.052 3.948 16 N -0.538 5.538 17 C 0.021 3.979 18 C 0.088 3.912 19 C -0.048 4.048 20 C -0.116 4.116 21 C -0.069 4.069 22 C -0.049 4.049 23 C 0.280 3.720 24 N -0.471 5.471 25 C -0.070 4.070 26 C -0.104 4.104 27 H 0.033 0.967 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.018 0.982 33 H -0.007 1.007 34 H 0.266 0.734 35 H 0.083 0.917 36 H 0.130 0.870 37 H 0.045 0.955 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.721 -10.603 20.414 23.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.340 5.340 4 C 0.143 3.857 5 C -0.577 4.577 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.790 3.210 10 H -0.184 1.184 11 H -0.206 1.206 12 H -0.203 1.203 13 C 0.283 3.717 14 O -0.460 6.460 15 C -0.078 4.078 16 N -0.262 5.262 17 C -0.127 4.127 18 C -0.038 4.038 19 C -0.049 4.049 20 C -0.135 4.135 21 C -0.089 4.089 22 C -0.052 4.052 23 C -0.034 4.034 24 N -0.148 5.148 25 C -0.090 4.090 26 C -0.122 4.122 27 H 0.053 0.947 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.036 0.964 33 H 0.011 0.989 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.148 0.852 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.126 0.874 41 H 0.085 0.915 42 H 0.165 0.835 43 H 0.164 0.836 44 H 0.162 0.838 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.654 -8.273 21.417 23.645 hybrid contribution 1.312 -0.381 -1.115 1.764 sum -4.342 -8.653 20.302 22.492 Atomic orbital electron populations 1.22157 0.94602 1.03420 1.01727 1.21734 0.95291 0.81382 1.03812 1.48298 1.64409 1.15082 1.06165 1.18620 0.95031 0.91411 0.80647 1.21680 0.97938 1.31732 1.06331 0.92851 1.25867 1.02280 0.94609 0.96575 1.70051 1.37797 1.34336 1.14789 0.85501 0.79208 0.79008 0.77296 1.18389 1.20602 1.20306 1.21286 0.77339 0.86723 0.86370 1.90625 1.47127 1.20524 1.87731 1.22025 1.04714 0.93789 0.87258 1.61534 1.17614 1.44722 1.02344 1.22491 0.87024 1.00345 1.02805 1.21275 1.03181 0.93798 0.85546 1.20155 0.93830 0.96173 0.94790 1.21234 0.97947 0.98938 0.95335 1.21315 0.97495 0.93148 0.96954 1.16114 0.97687 0.95775 0.95669 1.26038 0.92281 0.92526 0.92524 1.81279 1.09208 1.11828 1.12437 1.21346 0.96117 0.97679 0.93880 1.21186 0.99950 0.94326 0.96753 0.94726 0.88687 0.91687 0.91443 0.87933 0.96380 0.98861 0.92524 0.89918 0.85178 0.93576 0.90235 0.94499 0.87391 0.91463 0.83500 0.83607 0.83787 0.83565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 10.24 71.98 0.74 -2.80 16 2 C 0.10 2.77 5.93 86.38 0.51 3.28 16 3 N -0.61 -24.47 2.46 -826.16 -2.03 -26.50 16 4 C 0.26 14.13 5.16 85.63 0.44 14.57 16 5 C -0.54 -30.68 9.39 25.60 0.24 -30.44 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.31 5.46 84.65 0.46 0.77 16 8 N -0.93 -56.46 13.29 21.45 0.28 -56.17 16 9 Si 0.97 44.63 29.54 68.60 2.03 46.65 16 10 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 C 0.49 19.27 7.40 87.65 0.65 19.92 16 14 O -0.58 -29.17 13.89 -3.05 -0.04 -29.21 16 15 C 0.05 1.25 4.00 85.56 0.34 1.59 16 16 N -0.54 -12.57 4.49 -931.63 -4.18 -16.76 16 17 C 0.02 0.55 8.87 127.69 1.13 1.69 16 18 C 0.09 1.20 5.11 85.55 0.44 1.64 16 19 C -0.05 -0.68 4.89 -19.80 -0.10 -0.77 16 20 C -0.12 -1.46 7.89 22.23 0.18 -1.28 16 21 C -0.07 -0.89 9.76 22.54 0.22 -0.67 16 22 C -0.05 -0.75 5.73 -21.36 -0.12 -0.88 16 23 C 0.28 5.57 15.33 88.33 1.35 6.93 16 24 N -0.47 -11.83 18.54 19.01 0.35 -11.48 16 25 C -0.07 -0.96 9.76 22.54 0.22 -0.74 16 26 C -0.10 -1.42 9.68 22.23 0.22 -1.21 16 27 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.06 1.26 7.22 -2.39 -0.02 1.24 16 30 H 0.07 2.06 8.07 -2.38 -0.02 2.04 16 31 H 0.10 2.02 6.44 -2.39 -0.02 2.00 16 32 H 0.02 0.99 8.07 -2.39 -0.02 0.97 16 33 H -0.01 -0.42 7.42 -2.39 -0.02 -0.44 16 34 H 0.27 15.20 8.31 -92.72 -0.77 14.43 16 35 H 0.08 1.60 7.38 -2.38 -0.02 1.58 16 36 H 0.13 2.25 6.98 -2.39 -0.02 2.23 16 37 H 0.05 1.69 5.88 -2.39 -0.01 1.68 16 38 H 0.08 1.81 5.90 -2.38 -0.01 1.80 16 39 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.11 1.04 7.87 -2.39 -0.02 1.02 16 41 H 0.07 0.68 8.06 -2.39 -0.02 0.66 16 42 H 0.15 1.35 8.00 -2.91 -0.02 1.33 16 43 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 44 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 45 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -79.51 380.12 4.31 -75.20 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 0.99 Total: 6.68 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 6.92 Total: 11.59 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -5.58 Total: -110.91 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.04 Total: -29.21 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -79.51 4.31 -75.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052580840.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.854 kcal (2) G-P(sol) polarization free energy of solvation -79.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds