Wall clock time and date at job start Tue Mar 31 2020 11:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.50706 * 109.46563 * 66.04606 * 3 2 1 5 5 O 1.21276 * 120.00368 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99391 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99629 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.46964 * 90.00119 * 7 6 4 9 9 H 1.07998 * 120.00144 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99702 * 180.02562 * 8 7 6 11 11 N 1.31520 * 120.00055 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99917 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47274 * 59.99839 * 12 10 8 14 14 H 1.48509 * 109.47105 * 179.97438 * 12 10 8 15 15 H 1.48491 * 109.47234 * 299.99796 * 12 10 8 16 16 C 1.46503 * 120.00221 * 359.97438 * 6 4 3 17 17 C 1.53000 * 109.47048 * 90.00092 * 16 6 4 18 18 C 1.47193 * 109.46996 * 179.97438 * 17 16 6 19 19 N 6.68950 * 104.78013 * 339.68675 * 2 1 3 20 20 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 21 21 C 1.50696 * 109.47351 * 293.95574 * 20 2 1 22 22 C 1.38238 * 120.00290 * 269.73171 * 21 20 2 23 23 C 1.38236 * 120.00520 * 179.76650 * 22 21 20 24 24 C 1.38238 * 119.99353 * 0.50323 * 23 22 21 25 25 C 1.38236 * 120.00267 * 359.74384 * 24 23 22 26 26 C 1.38231 * 119.99929 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 28 28 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 29 29 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 30 30 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 31 31 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 32 32 H 1.09003 * 109.46915 * 209.99970 * 7 6 4 33 33 H 1.09004 * 109.46767 * 329.99572 * 7 6 4 34 34 H 0.96996 * 119.99893 * 179.97438 * 11 10 8 35 35 H 1.09002 * 109.46928 * 210.00030 * 16 6 4 36 36 H 1.09000 * 109.47067 * 330.00213 * 16 6 4 37 37 H 1.08996 * 109.47028 * 300.00472 * 17 16 6 38 38 H 1.09009 * 109.47131 * 59.99906 * 17 16 6 39 39 H 1.08997 * 109.46995 * 53.95554 * 20 2 1 40 40 H 1.09001 * 109.46848 * 173.95560 * 20 2 1 41 41 H 1.08006 * 119.99743 * 359.97438 * 22 21 20 42 42 H 1.07995 * 120.00356 * 180.22999 * 23 22 21 43 43 H 1.07998 * 119.99864 * 179.72869 * 24 23 22 44 44 H 1.08000 * 119.99990 * 179.97438 * 25 24 23 45 45 H 1.08003 * 119.99738 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 8 1.0047 1.4455 2.1407 6 7 2.0182 3.3200 1.5234 7 6 1.6701 3.9767 2.7860 8 6 2.7636 3.7370 3.7949 9 1 3.6307 3.1535 3.5230 10 6 2.6563 4.2617 5.0654 11 7 1.6000 4.9719 5.3966 12 14 4.0113 3.9640 6.3163 13 1 5.2889 4.5218 5.8044 14 1 3.6585 4.6298 7.5961 15 1 4.1640 2.5045 6.5428 16 6 2.7815 4.0468 0.5058 17 6 1.8165 4.7718 -0.4345 18 6 2.5834 5.5025 -1.4565 19 7 3.1756 6.0659 -2.2454 20 6 1.9954 -0.7660 -1.1377 21 6 1.6369 -2.2204 -0.9730 22 6 2.4964 -3.0730 -0.3056 23 6 2.1653 -4.4061 -0.1504 24 6 0.9794 -4.8889 -0.6716 25 6 0.1223 -4.0374 -1.3434 26 6 0.4512 -2.7034 -1.4945 27 1 -0.3634 -1.0252 0.0708 28 1 -0.3633 0.4513 -0.9233 29 1 -0.3633 0.5740 0.8525 30 1 3.0798 1.3443 -0.1082 31 1 1.5612 1.9273 -0.8309 32 1 1.5579 5.0481 2.6194 33 1 0.7325 3.5673 3.1620 34 1 1.5244 5.3407 6.2905 35 1 3.4321 4.7747 0.9906 36 1 3.3862 3.3431 -0.0662 37 1 1.1659 4.0439 -0.9192 38 1 1.2117 5.4755 0.1376 39 1 1.5611 -0.3872 -2.0628 40 1 3.0797 -0.6611 -1.1757 41 1 3.4251 -2.6968 0.0974 42 1 2.8350 -5.0713 0.3742 43 1 0.7227 -5.9313 -0.5541 44 1 -0.8040 -4.4148 -1.7509 45 1 -0.2183 -2.0383 -2.0197 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052857754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:22 Heat of formation + Delta-G solvation = 29.838373 kcal Electronic energy + Delta-G solvation = -25618.762524 eV Core-core repulsion = 22022.740922 eV Total energy + Delta-G solvation = -3596.021602 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.80290 -39.15161 -37.03973 -36.48637 -35.14036 -32.89983 -31.78268 -31.00072 -30.83950 -28.69197 -27.14807 -26.55196 -24.03029 -23.50589 -22.60175 -22.06098 -20.83580 -18.52599 -17.63059 -16.95774 -16.60052 -16.42907 -15.81534 -15.71464 -15.26302 -15.14221 -14.71340 -14.60861 -14.21810 -14.10092 -13.72273 -13.52914 -13.37331 -12.91643 -12.79171 -12.57601 -12.47326 -12.40526 -12.16185 -11.94061 -11.78235 -11.58826 -11.29980 -11.26466 -11.08644 -11.03432 -10.96471 -10.83411 -10.59080 -10.17330 -9.69699 -9.01524 -8.94919 -8.88337 -8.45479 -8.18356 -7.80933 -6.07414 -4.11822 1.23959 1.33326 2.70632 2.78611 3.30148 3.32246 3.36428 3.40858 3.45881 3.72083 4.08412 4.32065 4.44392 4.66475 4.74134 4.90859 4.94075 5.00686 5.04163 5.10800 5.18542 5.26183 5.28172 5.37697 5.41765 5.42954 5.47851 5.55809 5.67895 5.73934 5.81362 5.90647 5.96305 6.05870 6.30707 6.36109 6.42376 6.54462 6.83224 6.91879 7.07178 7.09677 7.37177 7.45121 7.55010 7.88975 8.18901 8.28152 8.86792 9.02975 9.53774 11.00686 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.010352 B = 0.003518 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.115732 B = 7957.858159 C = 9862.660938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.516 5.516 3 C 0.033 3.967 4 C 0.509 3.491 5 O -0.512 6.512 6 N -0.600 5.600 7 C 0.247 3.753 8 C -0.528 4.528 9 H 0.058 0.942 10 C 0.063 3.937 11 N -0.895 5.895 12 Si 0.896 3.104 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.276 1.276 16 C 0.118 3.882 17 C -0.050 4.050 18 C 0.217 3.783 19 N -0.446 5.446 20 C 0.092 3.908 21 C -0.073 4.073 22 C -0.096 4.096 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.113 4.113 27 H 0.068 0.932 28 H 0.016 0.984 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.042 0.958 40 H 0.083 0.917 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.566 -12.444 -15.633 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.240 5.240 3 C -0.098 4.098 4 C 0.294 3.706 5 O -0.387 6.387 6 N -0.332 5.332 7 C 0.128 3.872 8 C -0.567 4.567 9 H 0.076 0.924 10 C -0.139 4.139 11 N -0.534 5.534 12 Si 0.724 3.276 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.201 1.201 16 C -0.009 4.009 17 C -0.092 4.092 18 C -0.101 4.101 19 N -0.123 5.123 20 C -0.035 4.035 21 C -0.073 4.073 22 C -0.115 4.115 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.142 4.142 26 C -0.131 4.131 27 H 0.087 0.913 28 H 0.035 0.965 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.135 0.865 39 H 0.060 0.940 40 H 0.101 0.899 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.963 -12.029 -15.735 19.830 hybrid contribution 0.255 0.114 0.347 0.446 sum -0.708 -11.914 -15.388 19.474 Atomic orbital electron populations 1.22630 0.86431 1.02885 1.01077 1.61605 1.09023 1.11863 1.41521 1.22142 1.01592 0.89557 0.96493 1.20149 0.80478 0.81772 0.88165 1.90667 1.39007 1.62892 1.46146 1.48233 1.54309 1.12190 1.18513 1.19319 0.97391 0.92228 0.78247 1.21388 1.05433 1.33217 0.96660 0.92408 1.24910 0.95924 0.94990 0.98121 1.69908 1.28035 1.34859 1.20554 0.86584 0.81937 0.78605 0.80460 1.20272 1.21233 1.20136 1.21288 0.92925 0.96912 0.89727 1.19910 0.97669 0.99276 0.92344 1.29114 0.93731 0.93441 0.93823 1.81210 1.09659 1.10068 1.11356 1.21099 1.00515 0.90071 0.91844 1.19707 0.94755 0.94900 0.97939 1.21064 0.99765 0.93178 0.97457 1.21156 0.97153 0.95748 0.99942 1.21128 0.94793 0.99625 0.98616 1.21086 0.99561 0.93736 0.99814 1.21052 0.96315 0.95576 1.00197 0.91342 0.96524 0.88921 0.88335 0.92559 0.94822 0.93617 0.92644 0.88732 0.90790 0.87780 0.86461 0.94032 0.89889 0.85873 0.86166 0.86383 0.86309 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 8.78 60.07 0.53 0.76 16 2 N -0.52 -7.05 4.49 -245.82 -1.10 -8.15 16 3 C 0.03 0.43 4.00 -4.97 -0.02 0.41 16 4 C 0.51 9.22 7.37 -10.98 -0.08 9.14 16 5 O -0.51 -11.76 13.91 5.56 0.08 -11.68 16 6 N -0.60 -10.73 2.46 -175.05 -0.43 -11.16 16 7 C 0.25 5.78 5.16 -5.19 -0.03 5.76 16 8 C -0.53 -14.08 9.39 -34.44 -0.32 -14.40 16 9 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 10 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -25.53 13.29 55.43 0.74 -24.80 16 12 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 C 0.12 1.52 5.17 -4.04 -0.02 1.50 16 17 C -0.05 -0.51 6.03 -29.52 -0.18 -0.69 16 18 C 0.22 2.55 15.43 -20.76 -0.32 2.23 16 19 N -0.45 -6.42 18.54 42.15 0.78 -5.64 16 20 C 0.09 0.98 5.12 -4.97 -0.03 0.96 16 21 C -0.07 -0.81 4.88 -104.62 -0.51 -1.32 16 22 C -0.10 -1.07 9.70 -39.58 -0.38 -1.45 16 23 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 24 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 25 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 26 C -0.11 -1.15 7.97 -39.58 -0.32 -1.47 16 27 H 0.07 0.90 6.17 -51.93 -0.32 0.58 16 28 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 1.53 5.82 -51.93 -0.30 1.22 16 30 H 0.10 1.13 7.19 -51.93 -0.37 0.75 16 31 H 0.06 0.58 7.16 -51.93 -0.37 0.21 16 32 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 33 H 0.05 1.23 7.42 -51.93 -0.39 0.84 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 36 H 0.07 0.78 6.44 -51.93 -0.33 0.45 16 37 H 0.10 0.85 7.22 -51.93 -0.37 0.47 16 38 H 0.12 1.18 8.14 -51.92 -0.42 0.76 16 39 H 0.04 0.39 8.06 -51.93 -0.42 -0.03 16 40 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 41 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 43 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 45 H 0.12 1.04 8.03 -52.48 -0.42 0.62 16 LS Contribution 380.31 15.07 5.73 5.73 Total: -1.00 -33.29 380.31 -8.83 -42.12 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.63 Total: -0.99 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -2.97 Total: -1.72 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: -0.02 Total: -49.75 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.08 Total: -11.68 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.29 -8.83 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052857754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.961 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds