Wall clock time and date at job start Tue Mar 31 2020 11:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00286 * 2 1 4 4 C 1.52992 * 109.47258 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.47337 * 67.05837 * 4 3 2 6 6 C 1.46896 * 110.99862 * 290.00340 * 5 4 3 7 7 C 1.50699 * 109.47401 * 299.69057 * 6 5 4 8 8 H 1.07997 * 119.99646 * 354.96801 * 7 6 5 9 9 C 1.37872 * 119.99928 * 174.96063 * 7 6 5 10 10 N 1.31513 * 119.99686 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00266 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47210 * 89.99596 * 11 9 7 13 13 H 1.48497 * 109.46988 * 209.99676 * 11 9 7 14 14 H 1.48500 * 109.46804 * 329.99696 * 11 9 7 15 15 C 1.46900 * 110.99851 * 53.95864 * 5 4 3 16 16 C 1.50703 * 109.47225 * 66.04390 * 15 5 4 17 17 C 1.39924 * 125.87432 * 94.97704 * 16 15 5 18 18 C 1.35316 * 107.93240 * 179.77048 * 17 16 15 19 19 N 1.35227 * 107.70970 * 0.37008 * 18 17 16 20 20 C 1.40187 * 126.05574 * 179.89713 * 19 18 17 21 21 C 1.38835 * 120.06913 * 179.71065 * 20 19 18 22 22 C 1.38123 * 119.93287 * 179.97438 * 21 20 19 23 23 C 1.38278 * 120.06413 * 0.02562 * 22 21 20 24 24 C 1.38280 * 120.13844 * 359.97438 * 23 22 21 25 25 C 1.38117 * 120.06423 * 0.02562 * 24 23 22 26 26 N 1.30865 * 125.88012 * 274.97316 * 16 15 5 27 27 H 1.08998 * 109.47107 * 300.00187 * 1 2 3 28 28 H 1.08997 * 109.47087 * 60.00011 * 1 2 3 29 29 H 1.09009 * 109.47184 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47050 * 59.99522 * 3 2 1 31 31 H 1.09001 * 109.46827 * 300.00198 * 3 2 1 32 32 H 1.08995 * 109.47518 * 307.05465 * 4 3 2 33 33 H 1.09000 * 109.47407 * 187.05921 * 4 3 2 34 34 H 1.09002 * 109.46852 * 59.69584 * 6 5 4 35 35 H 1.09003 * 109.47214 * 179.68896 * 6 5 4 36 36 H 0.97006 * 120.00163 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.47103 * 306.04930 * 15 5 4 38 38 H 1.08996 * 109.47573 * 186.04711 * 15 5 4 39 39 H 1.08004 * 126.03287 * 0.02562 * 17 16 15 40 40 H 1.07996 * 126.14789 * 180.22397 * 18 17 16 41 41 H 1.07999 * 120.03074 * 0.02562 * 21 20 19 42 42 H 1.07997 * 119.96415 * 179.72186 * 22 21 20 43 43 H 1.08001 * 119.92863 * 179.97438 * 23 22 21 44 44 H 1.07998 * 119.97232 * 180.02562 * 24 23 22 45 45 H 1.08000 * 120.03848 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 7 3.9815 0.6074 -1.2745 6 6 3.6017 -0.8081 -1.3731 7 6 4.2441 -1.5801 -0.2496 8 1 4.9357 -1.0874 0.4177 9 6 3.9488 -2.9153 -0.0735 10 7 4.5098 -3.5890 0.9068 11 14 2.7529 -3.7676 -1.2280 12 1 3.4978 -4.3396 -2.3782 13 1 2.0535 -4.8568 -0.5002 14 1 1.7568 -2.7838 -1.7232 15 6 3.4556 1.3741 -2.4119 16 6 4.0619 2.7538 -2.4111 17 6 5.1900 3.1541 -3.1356 18 6 5.4115 4.4628 -2.8724 19 7 4.4604 4.8743 -2.0037 20 6 4.3305 6.1654 -1.4731 21 6 3.2982 6.4543 -0.5909 22 6 3.1732 7.7272 -0.0694 23 6 4.0746 8.7134 -0.4256 24 6 5.1039 8.4287 -1.3041 25 6 5.2340 7.1578 -1.8289 26 7 3.6240 3.7836 -1.7327 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6886 1.8463 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8484 0.5387 0.8210 33 1 3.9781 2.1725 0.1269 34 1 2.5177 -0.8992 -1.3034 35 1 3.9392 -1.2091 -2.3289 36 1 4.3024 -4.5285 1.0305 37 1 2.3719 1.4536 -2.3265 38 1 3.7105 0.8658 -3.3417 39 1 5.7776 2.5299 -3.7926 40 1 6.2066 5.0690 -3.2806 41 1 2.5941 5.6843 -0.3120 42 1 2.3677 7.9537 0.6134 43 1 3.9746 9.7080 -0.0169 44 1 5.8067 9.2009 -1.5802 45 1 6.0383 6.9358 -2.5147 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072690541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:28 Heat of formation + Delta-G solvation = 90.005078 kcal Electronic energy + Delta-G solvation = -26219.112225 eV Core-core repulsion = 22625.699647 eV Total energy + Delta-G solvation = -3593.412577 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.52355 -39.20704 -38.16171 -35.91752 -33.64427 -32.29153 -31.46449 -30.23183 -29.64657 -29.10166 -27.59498 -26.00392 -24.76570 -23.37228 -22.84426 -22.12145 -20.70518 -20.05304 -18.97032 -18.33764 -16.75632 -16.41410 -16.08064 -15.86466 -15.35366 -15.15954 -15.02151 -14.49027 -14.32858 -14.12635 -13.88908 -13.68781 -13.51352 -13.40976 -12.86402 -12.53717 -12.27537 -12.08423 -11.92762 -11.62170 -11.54780 -11.32077 -11.19560 -11.05655 -10.61134 -10.51764 -10.43762 -10.13501 -10.08564 -9.69795 -9.32330 -9.09140 -9.06837 -8.98377 -8.37112 -8.06284 -7.18589 -5.87200 -3.81021 0.67961 1.03165 2.13623 2.36441 2.85352 3.41032 3.47661 3.53336 3.54034 4.32375 4.37737 4.53585 4.59734 4.68635 4.72110 4.85191 5.04395 5.07610 5.14893 5.30454 5.43831 5.47982 5.56365 5.63613 5.67076 5.70225 5.77773 5.83375 5.90297 5.96460 5.98976 6.04546 6.05346 6.09982 6.18927 6.27825 6.33527 6.48188 6.70167 6.84133 7.08631 7.15318 7.42026 7.70367 7.75500 7.79662 8.01345 8.16600 8.82306 9.19578 9.76253 11.26485 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021141 B = 0.003210 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.092962 B = 8719.416536 C = 9303.416422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.354 6.354 3 C 0.028 3.972 4 C 0.065 3.935 5 N -0.515 5.515 6 C 0.150 3.850 7 C -0.490 4.490 8 H 0.076 0.924 9 C 0.069 3.931 10 N -0.908 5.908 11 Si 0.873 3.127 12 H -0.281 1.281 13 H -0.291 1.291 14 H -0.262 1.262 15 C 0.119 3.881 16 C 0.111 3.889 17 C -0.235 4.235 18 C 0.042 3.958 19 N -0.332 5.332 20 C 0.174 3.826 21 C -0.124 4.124 22 C -0.094 4.094 23 C -0.139 4.139 24 C -0.093 4.093 25 C -0.148 4.148 26 N -0.287 5.287 27 H 0.032 0.968 28 H 0.030 0.970 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.046 0.954 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.033 0.967 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.154 0.846 40 H 0.174 0.826 41 H 0.137 0.863 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.847 23.568 -6.607 24.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.272 6.272 3 C -0.050 4.050 4 C -0.064 4.064 5 N -0.239 5.239 6 C 0.024 3.976 7 C -0.529 4.529 8 H 0.094 0.906 9 C -0.131 4.131 10 N -0.549 5.549 11 Si 0.701 3.299 12 H -0.207 1.207 13 H -0.217 1.217 14 H -0.187 1.187 15 C -0.011 4.011 16 C -0.057 4.057 17 C -0.263 4.263 18 C -0.099 4.099 19 N -0.107 5.107 20 C 0.081 3.919 21 C -0.144 4.144 22 C -0.113 4.113 23 C -0.157 4.157 24 C -0.111 4.111 25 C -0.169 4.169 26 N -0.107 5.107 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.172 0.828 40 H 0.191 0.809 41 H 0.155 0.845 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.148 0.852 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.073 23.701 -5.735 24.578 hybrid contribution -0.975 -0.624 -1.088 1.589 sum -4.048 23.077 -6.823 24.403 Atomic orbital electron populations 1.22690 0.83663 1.02050 0.98714 1.88367 1.17425 1.26689 1.94705 1.23302 0.97312 0.85240 0.99159 1.22206 0.89460 0.99945 0.94787 1.62155 1.58062 1.04180 0.99476 1.20510 0.96857 0.82780 0.97418 1.20910 1.25348 0.94155 1.12448 0.90602 1.24799 0.95824 0.97274 0.95192 1.69902 1.44480 1.09089 1.31400 0.86885 0.82380 0.79401 0.81252 1.20717 1.21710 1.18699 1.20596 0.96583 0.86562 0.97324 1.22595 0.94581 0.94983 0.93575 1.21535 1.01738 0.94638 1.08399 1.22503 0.95433 0.96564 0.95369 1.45832 1.22670 1.07390 1.34820 1.17595 0.96855 0.81207 0.96236 1.20950 0.98094 0.97943 0.97434 1.21079 0.99018 0.92216 0.98978 1.21188 0.95757 0.99672 0.99127 1.20941 0.98046 0.95570 0.96587 1.20812 0.99914 0.92827 1.03356 1.77421 1.16260 0.93246 1.23797 0.94915 0.95183 0.90247 0.94373 0.93619 0.88181 0.91140 0.94970 0.96609 0.93031 0.93458 0.89220 0.82791 0.80918 0.84488 0.85237 0.85638 0.85216 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.35 -7.38 7.58 -35.23 -0.27 -7.65 16 3 C 0.03 0.52 5.69 37.15 0.21 0.73 16 4 C 0.06 1.33 5.40 -3.83 -0.02 1.31 16 5 N -0.52 -10.98 4.74 -237.52 -1.13 -12.11 16 6 C 0.15 3.67 3.38 -4.98 -0.02 3.65 16 7 C -0.49 -14.13 8.77 -34.44 -0.30 -14.43 16 8 H 0.08 2.39 7.23 -52.49 -0.38 2.02 16 9 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.91 -28.55 13.96 55.43 0.77 -27.77 16 11 Si 0.87 22.17 27.57 -169.99 -4.69 17.48 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 14 H -0.26 -6.40 6.40 56.52 0.36 -6.04 16 15 C 0.12 2.11 5.17 -4.97 -0.03 2.08 16 16 C 0.11 1.82 5.97 -82.37 -0.49 1.32 16 17 C -0.23 -3.29 10.74 -39.99 -0.43 -3.72 16 18 C 0.04 0.52 10.80 -17.10 -0.18 0.33 16 19 N -0.33 -4.66 3.80 -10.70 -0.04 -4.70 16 20 C 0.17 2.12 6.69 -83.59 -0.56 1.56 16 21 C -0.12 -1.43 9.66 -39.40 -0.38 -1.82 16 22 C -0.09 -0.84 10.04 -39.61 -0.40 -1.24 16 23 C -0.14 -1.07 10.04 -39.55 -0.40 -1.46 16 24 C -0.09 -0.71 10.04 -39.61 -0.40 -1.11 16 25 C -0.15 -1.39 9.46 -39.40 -0.37 -1.76 16 26 N -0.29 -4.68 11.01 33.69 0.37 -4.31 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 1.26 8.14 -51.92 -0.42 0.83 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.81 5.80 -51.93 -0.30 0.51 16 32 H 0.10 2.37 6.33 -51.93 -0.33 2.04 16 33 H 0.07 1.39 6.88 -51.93 -0.36 1.03 16 34 H 0.03 0.82 3.99 -51.93 -0.21 0.61 16 35 H 0.02 0.39 7.73 -51.93 -0.40 -0.01 16 36 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 37 H 0.05 0.84 5.71 -51.93 -0.30 0.54 16 38 H 0.09 1.46 8.01 -51.93 -0.42 1.05 16 39 H 0.15 1.88 8.06 -52.48 -0.42 1.45 16 40 H 0.17 1.41 7.04 -52.49 -0.37 1.04 16 41 H 0.14 1.70 7.70 -52.49 -0.40 1.30 16 42 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 44 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.13 0.94 6.74 -52.49 -0.35 0.59 16 LS Contribution 363.86 15.07 5.48 5.48 Total: -1.00 -34.10 363.86 -8.61 -42.72 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.37 Total: 1.92 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -2.75 Total: -11.05 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.02 Total: -48.89 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.27 Total: -7.65 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.69 Total: 17.48 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.10 -8.61 -42.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072690541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.720 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds