Wall clock time and date at job start Tue Mar 31 2020 11:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00286 * 2 1 4 4 C 1.52992 * 109.47258 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.47337 * 67.05837 * 4 3 2 6 6 C 1.46896 * 110.99862 * 290.00340 * 5 4 3 7 7 C 1.50699 * 109.47401 * 299.69057 * 6 5 4 8 8 H 1.07997 * 119.99646 * 354.96801 * 7 6 5 9 9 C 1.37872 * 119.99928 * 174.96063 * 7 6 5 10 10 N 1.31513 * 119.99686 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00266 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47210 * 89.99596 * 11 9 7 13 13 H 1.48497 * 109.46988 * 209.99676 * 11 9 7 14 14 H 1.48500 * 109.46804 * 329.99696 * 11 9 7 15 15 C 1.46900 * 110.99851 * 53.95864 * 5 4 3 16 16 C 1.50703 * 109.47225 * 66.04390 * 15 5 4 17 17 C 1.39924 * 125.87432 * 94.97704 * 16 15 5 18 18 C 1.35316 * 107.93240 * 179.77048 * 17 16 15 19 19 N 1.35227 * 107.70970 * 0.37008 * 18 17 16 20 20 C 1.40187 * 126.05574 * 179.89713 * 19 18 17 21 21 C 1.38835 * 120.06913 * 179.71065 * 20 19 18 22 22 C 1.38123 * 119.93287 * 179.97438 * 21 20 19 23 23 C 1.38278 * 120.06413 * 0.02562 * 22 21 20 24 24 C 1.38280 * 120.13844 * 359.97438 * 23 22 21 25 25 C 1.38117 * 120.06423 * 0.02562 * 24 23 22 26 26 N 1.30865 * 125.88012 * 274.97316 * 16 15 5 27 27 H 1.08998 * 109.47107 * 300.00187 * 1 2 3 28 28 H 1.08997 * 109.47087 * 60.00011 * 1 2 3 29 29 H 1.09009 * 109.47184 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47050 * 59.99522 * 3 2 1 31 31 H 1.09001 * 109.46827 * 300.00198 * 3 2 1 32 32 H 1.08995 * 109.47518 * 307.05465 * 4 3 2 33 33 H 1.09000 * 109.47407 * 187.05921 * 4 3 2 34 34 H 1.09002 * 109.46852 * 59.69584 * 6 5 4 35 35 H 1.09003 * 109.47214 * 179.68896 * 6 5 4 36 36 H 0.97006 * 120.00163 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.47103 * 306.04930 * 15 5 4 38 38 H 1.08996 * 109.47573 * 186.04711 * 15 5 4 39 39 H 1.08004 * 126.03287 * 0.02562 * 17 16 15 40 40 H 1.07996 * 126.14789 * 180.22397 * 18 17 16 41 41 H 1.07999 * 120.03074 * 0.02562 * 21 20 19 42 42 H 1.07997 * 119.96415 * 179.72186 * 22 21 20 43 43 H 1.08001 * 119.92863 * 179.97438 * 23 22 21 44 44 H 1.07998 * 119.97232 * 180.02562 * 24 23 22 45 45 H 1.08000 * 120.03848 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 7 3.9815 0.6074 -1.2745 6 6 3.6017 -0.8081 -1.3731 7 6 4.2441 -1.5801 -0.2496 8 1 4.9357 -1.0874 0.4177 9 6 3.9488 -2.9153 -0.0735 10 7 4.5098 -3.5890 0.9068 11 14 2.7529 -3.7676 -1.2280 12 1 3.4978 -4.3396 -2.3782 13 1 2.0535 -4.8568 -0.5002 14 1 1.7568 -2.7838 -1.7232 15 6 3.4556 1.3741 -2.4119 16 6 4.0619 2.7538 -2.4111 17 6 5.1900 3.1541 -3.1356 18 6 5.4115 4.4628 -2.8724 19 7 4.4604 4.8743 -2.0037 20 6 4.3305 6.1654 -1.4731 21 6 3.2982 6.4543 -0.5909 22 6 3.1732 7.7272 -0.0694 23 6 4.0746 8.7134 -0.4256 24 6 5.1039 8.4287 -1.3041 25 6 5.2340 7.1578 -1.8289 26 7 3.6240 3.7836 -1.7327 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6886 1.8463 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8484 0.5387 0.8210 33 1 3.9781 2.1725 0.1269 34 1 2.5177 -0.8992 -1.3034 35 1 3.9392 -1.2091 -2.3289 36 1 4.3024 -4.5285 1.0305 37 1 2.3719 1.4536 -2.3265 38 1 3.7105 0.8658 -3.3417 39 1 5.7776 2.5299 -3.7926 40 1 6.2066 5.0690 -3.2806 41 1 2.5941 5.6843 -0.3120 42 1 2.3677 7.9537 0.6134 43 1 3.9746 9.7080 -0.0169 44 1 5.8067 9.2009 -1.5802 45 1 6.0383 6.9358 -2.5147 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072690541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:27 Heat of formation + Delta-G solvation = 67.377307 kcal Electronic energy + Delta-G solvation = -26220.093438 eV Core-core repulsion = 22625.699647 eV Total energy + Delta-G solvation = -3594.393791 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.54189 -40.08915 -39.59279 -37.46262 -34.89325 -34.23249 -32.20265 -31.31456 -30.97951 -30.59365 -29.02295 -27.35940 -26.36963 -24.26615 -24.13106 -23.42749 -21.66590 -21.57001 -20.26153 -19.20719 -18.86699 -17.60875 -17.44149 -17.07342 -16.63487 -16.39994 -15.92566 -15.87545 -15.73850 -15.56359 -15.27364 -14.81503 -14.45586 -14.37631 -14.32111 -13.89162 -13.69157 -13.62524 -13.21284 -12.98489 -12.80557 -12.59869 -12.54574 -12.40297 -12.25232 -12.10309 -11.85655 -11.74019 -11.57717 -11.31556 -11.09668 -10.70236 -10.41825 -10.06483 -10.00079 -8.99691 -8.85498 -8.15911 -6.14613 -0.12550 0.35118 1.20932 1.39377 1.41908 1.43295 1.54578 1.73556 2.45569 2.82614 2.93358 3.20574 3.33737 3.51909 3.75663 3.90020 3.98244 4.09933 4.11000 4.25031 4.27251 4.35244 4.44666 4.47486 4.50835 4.51793 4.56765 4.63318 4.72619 4.79112 4.82066 4.83480 4.98229 5.01735 5.05984 5.22832 5.31663 5.40468 5.47715 5.52197 5.64024 5.67284 5.83994 6.04608 6.27497 6.31092 6.38783 6.67293 6.72986 6.87707 7.46605 9.01392 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021141 B = 0.003210 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.092962 B = 8719.416536 C = 9303.416422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.393 6.393 3 C 0.039 3.961 4 C 0.075 3.925 5 N -0.529 5.529 6 C 0.162 3.838 7 C -0.489 4.489 8 H 0.029 0.971 9 C 0.008 3.992 10 N -0.958 5.958 11 Si 0.943 3.057 12 H -0.269 1.269 13 H -0.289 1.289 14 H -0.244 1.244 15 C 0.126 3.874 16 C 0.088 3.912 17 C -0.256 4.256 18 C 0.055 3.945 19 N -0.332 5.332 20 C 0.136 3.864 21 C -0.147 4.147 22 C -0.100 4.100 23 C -0.131 4.131 24 C -0.090 4.090 25 C -0.146 4.146 26 N -0.315 5.315 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.021 0.979 36 H 0.262 0.738 37 H 0.047 0.953 38 H 0.102 0.898 39 H 0.168 0.832 40 H 0.217 0.783 41 H 0.115 0.885 42 H 0.147 0.853 43 H 0.157 0.843 44 H 0.164 0.836 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.349 26.538 -8.537 28.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.312 6.312 3 C -0.039 4.039 4 C -0.054 4.054 5 N -0.252 5.252 6 C 0.036 3.964 7 C -0.528 4.528 8 H 0.047 0.953 9 C -0.188 4.188 10 N -0.600 5.600 11 Si 0.768 3.232 12 H -0.194 1.194 13 H -0.216 1.216 14 H -0.168 1.168 15 C -0.004 4.004 16 C -0.079 4.079 17 C -0.284 4.284 18 C -0.087 4.087 19 N -0.108 5.108 20 C 0.044 3.956 21 C -0.167 4.167 22 C -0.119 4.119 23 C -0.149 4.149 24 C -0.108 4.108 25 C -0.167 4.167 26 N -0.136 5.136 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.120 0.880 39 H 0.185 0.815 40 H 0.233 0.767 41 H 0.133 0.867 42 H 0.165 0.835 43 H 0.174 0.826 44 H 0.182 0.818 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.590 26.710 -7.669 28.020 hybrid contribution -0.757 -1.279 -0.379 1.534 sum -4.346 25.431 -8.048 27.026 Atomic orbital electron populations 1.22885 0.81291 1.02889 1.00540 1.88266 1.20152 1.27794 1.95015 1.23159 0.95561 0.84864 1.00325 1.21961 0.91287 0.98853 0.93284 1.62007 1.59066 1.03181 1.00969 1.20230 0.96327 0.84344 0.95496 1.21112 1.24321 0.94585 1.12779 0.95258 1.25712 0.97934 0.98114 0.97027 1.70069 1.46626 1.09563 1.33777 0.85765 0.80147 0.78279 0.79045 1.19388 1.21567 1.16788 1.20532 0.96559 0.87249 0.96012 1.22430 0.95965 0.94405 0.95120 1.21767 1.01615 0.95814 1.09222 1.23142 0.95328 0.96351 0.93861 1.46018 1.22415 1.07585 1.34776 1.18007 0.98587 0.81105 0.97890 1.20990 0.98316 0.98778 0.98621 1.21344 0.99992 0.91473 0.99049 1.21625 0.94686 1.00540 0.98092 1.21406 0.98284 0.95571 0.95564 1.21153 0.99534 0.92697 1.03290 1.77310 1.17687 0.94074 1.24511 0.93143 0.93255 0.89954 0.93048 0.92369 0.92412 0.90664 0.94790 0.96083 0.92945 0.93473 0.87982 0.81470 0.76692 0.86656 0.83530 0.82580 0.81831 0.83175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 11.01 113.37 1.25 1.88 16 2 O -0.39 -16.40 7.58 -148.98 -1.13 -17.53 16 3 C 0.04 1.46 5.69 71.98 0.41 1.87 16 4 C 0.07 3.22 5.40 86.30 0.47 3.68 16 5 N -0.53 -23.11 4.74 -905.39 -4.29 -27.40 16 6 C 0.16 8.05 3.38 85.56 0.29 8.34 16 7 C -0.49 -29.39 8.77 25.60 0.22 -29.17 16 8 H 0.03 1.98 7.23 -2.91 -0.02 1.96 16 9 C 0.01 0.47 5.47 84.65 0.46 0.93 16 10 N -0.96 -62.46 13.96 21.45 0.30 -62.16 16 11 Si 0.94 46.14 27.57 68.60 1.89 48.03 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 13 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 14 H -0.24 -11.15 6.40 99.48 0.64 -10.51 16 15 C 0.13 4.44 5.17 85.56 0.44 4.89 16 16 C 0.09 2.87 5.97 43.11 0.26 3.13 16 17 C -0.26 -6.95 10.74 22.00 0.24 -6.71 16 18 C 0.05 1.25 10.80 83.50 0.90 2.15 16 19 N -0.33 -9.10 3.80 -187.76 -0.71 -9.81 16 20 C 0.14 3.16 6.69 38.09 0.25 3.41 16 21 C -0.15 -3.37 9.66 22.39 0.22 -3.16 16 22 C -0.10 -1.62 10.04 22.25 0.22 -1.39 16 23 C -0.13 -1.55 10.04 22.29 0.22 -1.33 16 24 C -0.09 -1.03 10.04 22.25 0.22 -0.80 16 25 C -0.15 -2.30 9.46 22.39 0.21 -2.09 16 26 N -0.31 -10.34 11.01 -47.34 -0.52 -10.86 16 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 2.05 5.80 -2.39 -0.01 2.04 16 32 H 0.06 2.94 6.33 -2.39 -0.02 2.93 16 33 H 0.08 3.11 6.88 -2.39 -0.02 3.10 16 34 H 0.03 1.72 3.99 -2.39 -0.01 1.71 16 35 H 0.02 1.03 7.73 -2.39 -0.02 1.01 16 36 H 0.26 15.99 8.31 -92.70 -0.77 15.22 16 37 H 0.05 1.65 5.71 -2.39 -0.01 1.64 16 38 H 0.10 3.27 8.01 -2.39 -0.02 3.25 16 39 H 0.17 3.88 8.06 -2.91 -0.02 3.86 16 40 H 0.22 2.73 7.04 -2.91 -0.02 2.71 16 41 H 0.12 3.04 7.70 -2.91 -0.02 3.02 16 42 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 44 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 45 H 0.15 1.60 6.74 -2.91 -0.02 1.58 16 Total: -1.00 -78.29 363.86 2.75 -75.55 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.92 Total: 18.57 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 6.29 Total: -14.38 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -5.23 Total: -110.24 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -1.13 Total: -17.53 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.89 Total: 48.03 kcal Total: -78.29 2.75 -75.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072690541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.924 kcal (2) G-P(sol) polarization free energy of solvation -78.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds