Wall clock time and date at job start Tue Mar 31 2020 11:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35879 * 116.99462 * 2 1 4 4 C 1.38858 * 119.91157 * 179.97438 * 3 2 1 5 5 C 1.37867 * 120.07852 * 180.02562 * 4 3 2 6 6 C 1.39539 * 119.91673 * 359.97438 * 5 4 3 7 7 C 1.47959 * 120.08084 * 180.02562 * 6 5 4 8 8 C 1.36585 * 126.28216 * 180.28859 * 7 6 5 9 9 C 1.40075 * 107.78787 * 180.12712 * 8 7 6 10 10 N 1.39994 * 125.78423 * 179.87265 * 9 8 7 11 11 C 1.46494 * 120.00158 * 184.71470 * 10 9 8 12 12 C 1.46500 * 119.99822 * 4.70897 * 10 9 8 13 13 C 1.53006 * 109.46998 * 270.00378 * 12 10 9 14 14 C 1.52999 * 109.46626 * 179.97438 * 13 12 10 15 15 C 1.50706 * 109.46957 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99816 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00340 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99773 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00296 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47118 * 89.99310 * 19 17 15 21 21 H 1.48494 * 109.47201 * 209.99478 * 19 17 15 22 22 H 1.48498 * 109.47011 * 329.99452 * 19 17 15 23 23 N 1.31274 * 108.43778 * 359.60174 * 9 8 7 24 24 N 1.36298 * 126.28170 * 359.97438 * 7 6 5 25 25 H 0.97001 * 126.07552 * 0.02562 * 24 7 6 26 26 C 1.39536 * 119.83856 * 0.27562 * 6 5 4 27 27 C 1.37864 * 119.91833 * 359.44523 * 26 6 5 28 28 H 1.08998 * 109.47039 * 299.99570 * 1 2 3 29 29 H 1.08998 * 109.47360 * 59.99788 * 1 2 3 30 30 H 1.09003 * 109.46973 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.96026 * 0.02562 * 4 3 2 32 32 H 1.07994 * 120.04461 * 180.02562 * 5 4 3 33 33 H 1.07999 * 126.10811 * 359.96839 * 8 7 6 34 34 H 1.09001 * 109.47412 * 269.99343 * 11 10 9 35 35 H 1.09000 * 109.47567 * 29.99625 * 11 10 9 36 36 H 1.09002 * 109.47279 * 149.99073 * 11 10 9 37 37 H 1.09000 * 109.47175 * 150.00509 * 12 10 9 38 38 H 1.09001 * 109.47297 * 30.00017 * 12 10 9 39 39 H 1.08993 * 109.46955 * 300.00226 * 13 12 10 40 40 H 1.09000 * 109.47050 * 60.00054 * 13 12 10 41 41 H 1.08993 * 109.47839 * 299.99931 * 14 13 12 42 42 H 1.09000 * 109.47160 * 60.00369 * 14 13 12 43 43 H 0.97000 * 120.00540 * 180.02562 * 18 17 15 44 44 H 1.08006 * 120.04269 * 179.70343 * 26 6 5 45 45 H 1.07998 * 119.96412 * 180.29313 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 3.4326 1.2814 0.0005 5 6 4.0620 2.5080 0.0011 6 6 3.3036 3.6794 0.0005 7 6 3.9753 4.9977 0.0005 8 6 3.3611 6.2177 0.0056 9 6 4.3601 7.1997 0.0006 10 7 4.1477 8.5834 0.0009 11 6 5.2859 9.4992 -0.1090 12 6 2.7873 9.1156 0.1109 13 6 2.1901 9.2821 -1.2880 14 6 0.7691 9.8374 -1.1729 15 6 0.1806 10.0008 -2.5507 16 1 0.7618 9.7348 -3.4212 17 6 -1.0999 10.4899 -2.6999 18 7 -1.8079 10.8134 -1.6398 19 14 -1.8296 10.6918 -4.4076 20 1 -2.5282 9.4411 -4.7984 21 1 -2.7971 11.8183 -4.4024 22 1 -0.7435 10.9766 -5.3794 23 7 5.5292 6.6026 0.0015 24 7 5.3204 5.2176 0.0015 25 1 6.0106 4.5360 0.0020 26 6 1.9103 3.6043 0.0053 27 6 1.2879 2.3742 -0.0011 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0189 0.3744 0.0005 32 1 5.1406 2.5624 0.0011 33 1 2.2956 6.3939 0.0098 34 1 5.6562 9.7397 0.8875 35 1 6.0793 9.0251 -0.6868 36 1 4.9690 10.4141 -0.6096 37 1 2.8151 10.0834 0.6116 38 1 2.1726 8.4252 0.6885 39 1 2.8047 9.9725 -1.8655 40 1 2.1622 8.3144 -1.7887 41 1 0.1546 9.1467 -0.5955 42 1 0.7965 10.8051 -0.6720 43 1 -2.7089 11.1571 -1.7446 44 1 1.3201 4.5088 0.0097 45 1 0.2095 2.3153 -0.0022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077360656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:52 Heat of formation + Delta-G solvation = 59.060513 kcal Electronic energy + Delta-G solvation = -24988.723242 eV Core-core repulsion = 21393.968808 eV Total energy + Delta-G solvation = -3594.754434 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.02346 -40.16859 -37.71029 -36.63473 -33.66260 -32.02878 -31.63810 -31.11770 -30.13868 -28.73384 -27.57832 -26.95639 -25.29202 -23.31731 -22.91194 -22.52571 -20.35769 -20.27373 -19.08048 -18.64593 -17.75580 -16.29956 -16.19871 -16.04258 -15.81030 -15.26737 -14.87596 -14.67637 -14.41923 -14.15485 -13.96679 -13.69510 -13.60593 -13.38544 -13.08682 -12.90180 -12.33948 -12.26153 -12.12843 -11.95015 -11.71267 -11.52449 -11.24058 -11.05905 -10.82858 -10.77266 -10.56734 -10.27459 -10.08310 -9.66070 -9.40603 -9.31827 -9.13747 -9.01462 -8.33445 -7.84683 -7.21671 -5.98671 -4.00513 0.72998 1.08452 2.31079 2.77462 2.94529 3.21091 3.32661 3.38959 3.42925 3.61995 3.68154 4.46644 4.48130 4.55025 4.57840 4.79207 4.84951 4.97173 5.10967 5.15557 5.19386 5.31353 5.37178 5.43506 5.67386 5.71403 5.74331 5.84283 5.88452 5.95667 6.02991 6.08300 6.11019 6.23918 6.32735 6.38388 6.49493 6.69752 6.81600 7.05443 7.13506 7.26033 7.54144 7.69050 7.80310 7.89668 8.01417 8.18365 8.45718 9.06431 9.63460 11.12449 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.009161 B = 0.003251 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.545151 B = 8610.245150 C =11192.673577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.318 6.318 3 C 0.131 3.869 4 C -0.149 4.149 5 C -0.072 4.072 6 C -0.064 4.064 7 C 0.146 3.854 8 C -0.277 4.277 9 C 0.352 3.648 10 N -0.605 5.605 11 C 0.107 3.893 12 C 0.134 3.866 13 C -0.127 4.127 14 C 0.024 3.976 15 C -0.517 4.517 16 H 0.054 0.946 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 N -0.351 5.351 24 N -0.484 5.484 25 H 0.433 0.567 26 C -0.046 4.046 27 C -0.202 4.202 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.126 0.874 33 H 0.150 0.850 34 H 0.039 0.961 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.048 0.952 40 H 0.051 0.949 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.139 0.861 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.793 -19.215 6.286 22.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.231 6.231 3 C 0.085 3.915 4 C -0.168 4.168 5 C -0.091 4.091 6 C -0.066 4.066 7 C 0.019 3.981 8 C -0.309 4.309 9 C 0.095 3.905 10 N -0.326 5.326 11 C -0.037 4.037 12 C 0.012 3.988 13 C -0.166 4.166 14 C -0.014 4.014 15 C -0.556 4.556 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 N -0.186 5.186 24 N -0.193 5.193 25 H 0.277 0.723 26 C -0.065 4.065 27 C -0.221 4.221 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.151 0.849 32 H 0.144 0.856 33 H 0.168 0.832 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.035 0.965 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.157 0.843 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.918 -18.977 6.350 22.796 hybrid contribution -1.305 -0.132 -1.006 1.653 sum 9.613 -19.109 5.344 22.048 Atomic orbital electron populations 1.23109 0.78037 1.04065 1.01793 1.86055 1.21699 1.26915 1.88456 1.19155 0.92336 0.84254 0.95712 1.20254 0.91376 0.98346 1.06823 1.20870 0.99369 0.90923 0.97918 1.17986 0.93090 0.89649 1.05892 1.19250 0.84502 0.93198 1.01158 1.21062 1.00227 0.89422 1.20176 1.19074 0.90976 0.85866 0.94539 1.45906 1.06976 0.98984 1.80751 1.21455 0.88604 0.93288 1.00315 1.21665 0.79822 0.98425 0.98897 1.22073 0.99171 1.00781 0.94547 1.19044 0.89251 0.95990 0.97119 1.21246 0.99020 1.42485 0.92821 0.92791 1.25009 0.97227 0.95603 0.96584 1.69958 1.10559 1.44510 1.28545 0.86624 0.79021 0.77684 0.84870 1.20702 1.21253 1.19909 1.77321 1.19337 0.86111 1.35781 1.45939 1.04561 1.05607 1.63240 0.72334 1.21075 0.93041 0.97895 0.94536 1.21235 1.00499 0.91891 1.08470 0.92356 0.92287 0.88182 0.84882 0.85639 0.83246 0.94202 0.91871 0.91564 0.90985 0.91263 0.93323 0.93041 0.96536 0.96588 0.93055 0.84348 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.02 10.49 -19.36 -0.20 -3.22 16 3 C 0.13 1.33 6.69 -39.12 -0.26 1.07 16 4 C -0.15 -1.41 9.97 -39.49 -0.39 -1.80 16 5 C -0.07 -0.68 9.70 -39.23 -0.38 -1.06 16 6 C -0.06 -0.74 5.87 -104.95 -0.62 -1.36 16 7 C 0.15 1.99 6.97 -82.50 -0.57 1.42 16 8 C -0.28 -4.35 9.26 -39.49 -0.37 -4.72 16 9 C 0.35 5.93 7.57 -154.63 -1.17 4.76 16 10 N -0.60 -9.94 3.02 -181.40 -0.55 -10.49 16 11 C 0.11 1.50 10.57 59.84 0.63 2.13 16 12 C 0.13 2.30 5.37 -4.04 -0.02 2.28 16 13 C -0.13 -2.60 5.48 -26.73 -0.15 -2.75 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 19 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 N -0.35 -5.68 12.09 31.34 0.38 -5.30 16 24 N -0.48 -6.34 7.29 33.27 0.24 -6.09 16 25 H 0.43 4.13 8.10 -182.62 -1.48 2.65 16 26 C -0.05 -0.52 9.56 -39.23 -0.38 -0.89 16 27 C -0.20 -2.03 9.02 -39.49 -0.36 -2.38 16 28 H 0.06 0.31 7.66 -51.93 -0.40 -0.08 16 29 H 0.06 0.33 7.65 -51.93 -0.40 -0.06 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.13 0.88 7.20 -52.49 -0.38 0.50 16 33 H 0.15 2.30 6.64 -52.49 -0.35 1.95 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.88 7.74 -51.93 -0.40 0.48 16 36 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 37 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 38 H 0.07 1.16 7.03 -51.93 -0.36 0.80 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.14 1.52 7.01 -52.48 -0.37 1.15 16 45 H 0.13 1.09 6.28 -52.49 -0.33 0.76 16 LS Contribution 376.82 15.07 5.68 5.68 Total: -1.00 -33.34 376.82 -10.13 -43.46 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.80 Total: 0.35 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -3.59 Total: -15.10 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.81 Total: -47.80 kcal Atomic # 8 Polarization: -3.02 SS G_CDS: -0.20 Total: -3.22 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.34 -10.13 -43.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077360656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.524 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds