Wall clock time and date at job start Tue Mar 31 2020 11:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35879 * 116.99462 * 2 1 4 4 C 1.38858 * 119.91157 * 179.97438 * 3 2 1 5 5 C 1.37867 * 120.07852 * 180.02562 * 4 3 2 6 6 C 1.39539 * 119.91673 * 359.97438 * 5 4 3 7 7 C 1.47959 * 120.08084 * 180.02562 * 6 5 4 8 8 C 1.36585 * 126.28216 * 180.28859 * 7 6 5 9 9 C 1.40075 * 107.78787 * 180.12712 * 8 7 6 10 10 N 1.39994 * 125.78423 * 179.87265 * 9 8 7 11 11 C 1.46494 * 120.00158 * 184.71470 * 10 9 8 12 12 C 1.46500 * 119.99822 * 4.70897 * 10 9 8 13 13 C 1.53006 * 109.46998 * 270.00378 * 12 10 9 14 14 C 1.52999 * 109.46626 * 179.97438 * 13 12 10 15 15 C 1.50706 * 109.46957 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99816 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00340 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99773 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00296 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47118 * 89.99310 * 19 17 15 21 21 H 1.48494 * 109.47201 * 209.99478 * 19 17 15 22 22 H 1.48498 * 109.47011 * 329.99452 * 19 17 15 23 23 N 1.31274 * 108.43778 * 359.60174 * 9 8 7 24 24 N 1.36298 * 126.28170 * 359.97438 * 7 6 5 25 25 H 0.97001 * 126.07552 * 0.02562 * 24 7 6 26 26 C 1.39536 * 119.83856 * 0.27562 * 6 5 4 27 27 C 1.37864 * 119.91833 * 359.44523 * 26 6 5 28 28 H 1.08998 * 109.47039 * 299.99570 * 1 2 3 29 29 H 1.08998 * 109.47360 * 59.99788 * 1 2 3 30 30 H 1.09003 * 109.46973 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.96026 * 0.02562 * 4 3 2 32 32 H 1.07994 * 120.04461 * 180.02562 * 5 4 3 33 33 H 1.07999 * 126.10811 * 359.96839 * 8 7 6 34 34 H 1.09001 * 109.47412 * 269.99343 * 11 10 9 35 35 H 1.09000 * 109.47567 * 29.99625 * 11 10 9 36 36 H 1.09002 * 109.47279 * 149.99073 * 11 10 9 37 37 H 1.09000 * 109.47175 * 150.00509 * 12 10 9 38 38 H 1.09001 * 109.47297 * 30.00017 * 12 10 9 39 39 H 1.08993 * 109.46955 * 300.00226 * 13 12 10 40 40 H 1.09000 * 109.47050 * 60.00054 * 13 12 10 41 41 H 1.08993 * 109.47839 * 299.99931 * 14 13 12 42 42 H 1.09000 * 109.47160 * 60.00369 * 14 13 12 43 43 H 0.97000 * 120.00540 * 180.02562 * 18 17 15 44 44 H 1.08006 * 120.04269 * 179.70343 * 26 6 5 45 45 H 1.07998 * 119.96412 * 180.29313 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 3.4326 1.2814 0.0005 5 6 4.0620 2.5080 0.0011 6 6 3.3036 3.6794 0.0005 7 6 3.9753 4.9977 0.0005 8 6 3.3611 6.2177 0.0056 9 6 4.3601 7.1997 0.0006 10 7 4.1477 8.5834 0.0009 11 6 5.2859 9.4992 -0.1090 12 6 2.7873 9.1156 0.1109 13 6 2.1901 9.2821 -1.2880 14 6 0.7691 9.8374 -1.1729 15 6 0.1806 10.0008 -2.5507 16 1 0.7618 9.7348 -3.4212 17 6 -1.0999 10.4899 -2.6999 18 7 -1.8079 10.8134 -1.6398 19 14 -1.8296 10.6918 -4.4076 20 1 -2.5282 9.4411 -4.7984 21 1 -2.7971 11.8183 -4.4024 22 1 -0.7435 10.9766 -5.3794 23 7 5.5292 6.6026 0.0015 24 7 5.3204 5.2176 0.0015 25 1 6.0106 4.5360 0.0020 26 6 1.9103 3.6043 0.0053 27 6 1.2879 2.3742 -0.0011 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0189 0.3744 0.0005 32 1 5.1406 2.5624 0.0011 33 1 2.2956 6.3939 0.0098 34 1 5.6562 9.7397 0.8875 35 1 6.0793 9.0251 -0.6868 36 1 4.9690 10.4141 -0.6096 37 1 2.8151 10.0834 0.6116 38 1 2.1726 8.4252 0.6885 39 1 2.8047 9.9725 -1.8655 40 1 2.1622 8.3144 -1.7887 41 1 0.1546 9.1467 -0.5955 42 1 0.7965 10.8051 -0.6720 43 1 -2.7089 11.1571 -1.7446 44 1 1.3201 4.5088 0.0097 45 1 0.2095 2.3153 -0.0022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077360656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:51 Heat of formation + Delta-G solvation = 40.700636 kcal Electronic energy + Delta-G solvation = -24989.519386 eV Core-core repulsion = 21393.968808 eV Total energy + Delta-G solvation = -3595.550578 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.10282 -40.94631 -38.55851 -37.89765 -35.58903 -33.52399 -32.64864 -32.27376 -31.23439 -29.74851 -28.87275 -27.88070 -26.78764 -24.74210 -24.02940 -23.36533 -22.09798 -21.34709 -20.33402 -19.44615 -18.68874 -18.37530 -17.00769 -16.96209 -16.67101 -16.60132 -16.25441 -15.99925 -15.66570 -15.30283 -15.01833 -14.81231 -14.75184 -14.33406 -14.22596 -14.14659 -13.70844 -13.63055 -13.18901 -13.00879 -12.85032 -12.80047 -12.60271 -12.55914 -12.43305 -12.20474 -11.78254 -11.57553 -11.52274 -11.36664 -11.29970 -10.99096 -10.52003 -10.11337 -10.05483 -8.79734 -8.47292 -8.16240 -6.27362 -0.15547 0.31854 1.28584 1.40915 1.41574 1.52775 1.66808 2.02998 2.32227 2.42012 2.49856 2.82600 3.15675 3.58024 3.76204 3.85614 3.97880 4.14957 4.23156 4.32348 4.38114 4.40455 4.42102 4.44721 4.56125 4.69297 4.70012 4.76565 4.77557 4.83532 4.90761 4.95285 5.01301 5.10967 5.14053 5.26521 5.29830 5.36226 5.48792 5.55924 5.63322 5.78186 5.89451 6.04715 6.29889 6.35968 6.51314 6.66207 6.88450 6.99379 7.41224 8.93985 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.009161 B = 0.003251 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.545151 B = 8610.245150 C =11192.673577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.129 3.871 4 C -0.154 4.154 5 C -0.062 4.062 6 C -0.086 4.086 7 C 0.166 3.834 8 C -0.311 4.311 9 C 0.335 3.665 10 N -0.611 5.611 11 C 0.106 3.894 12 C 0.147 3.853 13 C -0.107 4.107 14 C 0.030 3.970 15 C -0.542 4.542 16 H 0.052 0.948 17 C 0.004 3.996 18 N -0.930 5.930 19 Si 0.959 3.041 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.267 1.267 23 N -0.369 5.369 24 N -0.470 5.470 25 H 0.449 0.551 26 C -0.057 4.057 27 C -0.208 4.208 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.121 0.879 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.040 0.960 41 H -0.002 1.002 42 H -0.002 1.002 43 H 0.264 0.736 44 H 0.131 0.869 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.394 -20.874 5.726 24.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.242 6.242 3 C 0.083 3.917 4 C -0.172 4.172 5 C -0.081 4.081 6 C -0.088 4.088 7 C 0.038 3.962 8 C -0.343 4.343 9 C 0.079 3.921 10 N -0.333 5.333 11 C -0.036 4.036 12 C 0.024 3.976 13 C -0.147 4.147 14 C -0.008 4.008 15 C -0.580 4.580 16 H 0.070 0.930 17 C -0.194 4.194 18 N -0.570 5.570 19 Si 0.784 3.216 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.192 1.192 23 N -0.204 5.204 24 N -0.182 5.182 25 H 0.296 0.704 26 C -0.076 4.076 27 C -0.227 4.227 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.139 0.861 31 H 0.172 0.828 32 H 0.170 0.830 33 H 0.160 0.840 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.016 0.984 42 H 0.017 0.983 43 H 0.072 0.928 44 H 0.149 0.851 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 11.555 -20.655 5.791 24.365 hybrid contribution -1.525 0.220 -0.809 1.741 sum 10.030 -20.434 4.983 23.302 Atomic orbital electron populations 1.23378 0.76415 1.05734 1.02334 1.86050 1.23442 1.26529 1.88159 1.19387 0.92903 0.84505 0.94894 1.20559 0.91413 0.99070 1.06165 1.21136 1.00623 0.90090 0.96265 1.18015 0.93313 0.89358 1.08139 1.19416 0.84487 0.93516 0.98826 1.21120 1.00039 0.90350 1.22779 1.19272 0.91509 0.86105 0.95180 1.45897 1.06909 0.99401 1.81053 1.21556 0.87844 0.93033 1.01203 1.21385 0.80535 0.99137 0.96535 1.21807 0.96528 0.99549 0.96773 1.18916 0.91650 0.94758 0.95488 1.21656 0.99662 1.42705 0.93951 0.92955 1.25884 0.97656 0.95111 1.00784 1.70074 1.11002 1.45104 1.30816 0.85538 0.78277 0.77972 0.79826 1.19795 1.20565 1.19170 1.77232 1.19259 0.87447 1.36415 1.45924 1.04959 1.05119 1.62206 0.70409 1.21143 0.93234 0.98275 0.94985 1.21383 1.01409 0.91467 1.08412 0.91658 0.91897 0.86061 0.82812 0.83008 0.84013 0.92866 0.91990 0.90870 0.89812 0.91261 0.93564 0.94117 0.98403 0.98330 0.92760 0.85073 0.83294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -5.61 10.49 -92.19 -0.97 -6.57 16 3 C 0.13 2.41 6.69 22.57 0.15 2.56 16 4 C -0.15 -2.55 9.97 22.33 0.22 -2.32 16 5 C -0.06 -1.06 9.70 22.50 0.22 -0.84 16 6 C -0.09 -1.93 5.87 -20.07 -0.12 -2.04 16 7 C 0.17 4.46 6.97 40.64 0.28 4.74 16 8 C -0.31 -9.99 9.26 22.33 0.21 -9.78 16 9 C 0.34 11.34 7.57 133.28 1.01 12.35 16 10 N -0.61 -20.07 3.02 -727.81 -2.20 -22.26 16 11 C 0.11 2.91 10.57 127.77 1.35 4.26 16 12 C 0.15 5.12 5.37 86.38 0.46 5.58 16 13 C -0.11 -4.51 5.48 30.60 0.17 -4.35 16 14 C 0.03 1.54 4.97 29.85 0.15 1.69 16 15 C -0.54 -31.07 9.11 25.60 0.23 -30.83 16 16 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 17 C 0.00 0.21 5.46 84.65 0.46 0.67 16 18 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 19 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 23 N -0.37 -11.73 12.09 -54.75 -0.66 -12.39 16 24 N -0.47 -11.79 7.29 -48.64 -0.35 -12.15 16 25 H 0.45 7.68 8.10 -213.34 -1.73 5.96 16 26 C -0.06 -1.28 9.56 22.49 0.22 -1.06 16 27 C -0.21 -3.99 9.02 22.33 0.20 -3.79 16 28 H 0.06 0.59 7.66 -2.39 -0.02 0.57 16 29 H 0.06 0.61 7.65 -2.39 -0.02 0.59 16 30 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 32 H 0.15 1.66 7.20 -2.91 -0.02 1.64 16 33 H 0.14 4.63 6.64 -2.91 -0.02 4.61 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.70 7.74 -2.39 -0.02 1.68 16 36 H 0.07 1.87 8.07 -2.39 -0.02 1.85 16 37 H 0.08 2.71 8.07 -2.39 -0.02 2.69 16 38 H 0.07 2.40 7.03 -2.39 -0.02 2.39 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 42 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 44 H 0.13 3.04 7.01 -2.91 -0.02 3.02 16 45 H 0.15 2.28 6.28 -2.91 -0.02 2.26 16 Total: -1.00 -71.38 376.82 3.73 -67.65 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -0.73 Total: 16.89 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 6.33 Total: -21.90 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -2.93 Total: -102.52 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.97 Total: -6.57 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -71.38 3.73 -67.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077360656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.353 kcal (2) G-P(sol) polarization free energy of solvation -71.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds