Wall clock time and date at job start Tue Mar 31 2020 10:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46878 * 2 1 4 4 C 1.46499 * 119.99852 * 270.00193 * 3 2 1 5 5 C 1.50701 * 109.46967 * 269.99442 * 4 3 2 6 6 H 1.08001 * 119.99938 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00235 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99905 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00188 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47195 * 90.00196 * 9 7 5 11 11 H 1.48499 * 109.47162 * 210.00112 * 9 7 5 12 12 H 1.48498 * 109.47318 * 329.99879 * 9 7 5 13 13 C 1.34776 * 120.00200 * 89.99803 * 3 2 1 14 14 O 1.21279 * 120.00623 * 179.97438 * 13 3 2 15 15 C 1.50709 * 119.99783 * 0.02562 * 13 3 2 16 16 N 1.46503 * 109.46910 * 179.97438 * 15 13 3 17 17 C 1.39569 * 119.99582 * 179.97438 * 16 15 13 18 18 C 1.38356 * 120.24361 * 359.97438 * 17 16 15 19 19 C 1.38709 * 120.29628 * 180.02562 * 18 17 16 20 20 C 1.37775 * 120.73617 * 359.97438 * 19 18 17 21 21 C 1.39223 * 120.06378 * 359.97438 * 20 19 18 22 22 C 1.40183 * 120.23611 * 180.02562 * 17 16 15 23 23 C 1.46463 * 133.98438 * 359.94188 * 22 17 16 24 24 C 1.34215 * 106.99286 * 180.02562 * 23 22 17 25 25 N 1.36958 * 109.87833 * 359.97438 * 24 23 22 26 26 C 1.46495 * 125.06911 * 179.97438 * 25 24 23 27 27 H 1.08998 * 109.47298 * 60.00140 * 1 2 3 28 28 H 1.09003 * 109.46965 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47441 * 299.99802 * 1 2 3 30 30 H 1.08998 * 109.47002 * 240.00364 * 2 1 3 31 31 H 1.08998 * 109.47298 * 119.99860 * 2 1 3 32 32 H 1.08990 * 109.47169 * 29.99791 * 4 3 2 33 33 H 1.09003 * 109.46781 * 150.00049 * 4 3 2 34 34 H 0.96999 * 120.00123 * 180.02562 * 8 7 5 35 35 H 1.08993 * 109.47066 * 59.99656 * 15 13 3 36 36 H 1.09002 * 109.46820 * 299.99741 * 15 13 3 37 37 H 0.96996 * 120.00021 * 359.97438 * 16 15 13 38 38 H 1.08002 * 119.85653 * 0.02562 * 18 17 16 39 39 H 1.08001 * 119.63307 * 179.97438 * 19 18 17 40 40 H 1.07997 * 119.96904 * 179.69824 * 20 19 18 41 41 H 1.08001 * 126.50525 * 0.03859 * 23 22 17 42 42 H 1.07997 * 125.05947 * 180.02562 * 24 23 22 43 43 H 1.09002 * 109.47470 * 89.97760 * 26 25 24 44 44 H 1.08997 * 109.47598 * 209.98134 * 26 25 24 45 45 H 1.09005 * 109.47367 * 329.97905 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7037 6 1 4.3426 1.2305 -1.0961 7 6 4.1490 2.3898 -2.8779 8 7 3.3489 3.1257 -3.6181 9 14 5.9131 2.0958 -3.4174 10 1 5.9760 0.8746 -4.2601 11 1 6.3921 3.2629 -4.2007 12 1 6.7734 1.9163 -2.2205 13 6 2.2429 2.0167 1.1672 14 8 2.6475 3.1600 1.1673 15 6 1.9922 1.3060 2.4723 16 7 2.3100 2.2035 3.5859 17 6 2.1549 1.7648 4.9017 18 6 1.7010 0.4837 5.1603 19 6 1.5460 0.0467 6.4676 20 6 1.8404 0.8768 7.5270 21 6 2.2998 2.1701 7.2931 22 6 2.4569 2.6195 5.9710 23 6 2.9450 3.9972 6.0654 24 6 3.0478 4.2883 7.3715 25 7 2.6643 3.2081 8.1210 26 6 2.6481 3.1625 9.5851 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5816 1.6877 -2.0283 33 1 2.0953 3.1411 -1.1383 34 1 3.6748 3.5156 -4.4444 35 1 2.6227 0.4188 2.5299 36 1 0.9443 1.0115 2.5302 37 1 2.6281 3.1025 3.4086 38 1 1.4663 -0.1793 4.3406 39 1 1.1905 -0.9553 6.6571 40 1 1.7105 0.5255 8.5400 41 1 3.1777 4.6543 5.2404 42 1 3.3822 5.2340 7.7719 43 1 1.6758 3.4954 9.9484 44 1 2.8304 2.1410 9.9189 45 1 3.4262 3.8172 9.9777 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088532842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:17 Heat of formation + Delta-G solvation = 10.760626 kcal Electronic energy + Delta-G solvation = -25589.922274 eV Core-core repulsion = 21993.073399 eV Total energy + Delta-G solvation = -3596.848875 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.09276 -40.91138 -38.53621 -37.08325 -35.76266 -34.90463 -33.46258 -31.67933 -30.69578 -30.04332 -29.04235 -27.32874 -26.85627 -24.79438 -24.07114 -23.06302 -22.43788 -20.70569 -20.10040 -18.83021 -18.55105 -17.68931 -17.43164 -17.10828 -16.63039 -16.60271 -16.21841 -16.11297 -15.67626 -15.26539 -14.89918 -14.69427 -14.35745 -14.17955 -14.14219 -14.07344 -13.62958 -13.48213 -13.44227 -13.25699 -13.08404 -13.02784 -12.68135 -12.52295 -12.26058 -12.24159 -12.15239 -12.01684 -11.88607 -11.73847 -11.12658 -10.74797 -10.65531 -9.55410 -9.48639 -9.05110 -8.24258 -7.83787 -6.38856 0.49300 0.83912 1.35303 1.38382 1.48469 1.68959 1.87975 1.97058 2.11971 2.37572 2.67351 3.05637 3.12003 3.54401 3.97926 4.03479 4.04453 4.10357 4.26302 4.31656 4.37150 4.44384 4.45485 4.51653 4.65146 4.65988 4.73603 4.78266 4.90931 4.94152 4.98727 5.05305 5.11040 5.13112 5.19892 5.40089 5.46990 5.54993 5.77488 5.79543 5.83049 5.89060 6.03886 6.22649 6.45751 6.56900 6.66565 6.71226 6.78967 7.22963 7.37935 8.83053 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018241 B = 0.002850 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.655604 B = 9821.969426 C =10717.337011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 N -0.596 5.596 4 C 0.262 3.738 5 C -0.542 4.542 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.491 3.509 14 O -0.593 6.593 15 C 0.123 3.877 16 N -0.738 5.738 17 C 0.249 3.751 18 C -0.253 4.253 19 C -0.046 4.046 20 C -0.201 4.201 21 C 0.122 3.878 22 C -0.204 4.204 23 C -0.225 4.225 24 C 0.042 3.958 25 N -0.492 5.492 26 C 0.075 3.925 27 H 0.038 0.962 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.026 0.974 33 H -0.004 1.004 34 H 0.267 0.733 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.400 0.600 38 H 0.136 0.864 39 H 0.153 0.847 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.199 0.801 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.188 -7.815 25.703 27.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.027 4.027 3 N -0.327 5.327 4 C 0.141 3.859 5 C -0.581 4.581 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.199 1.199 13 C 0.280 3.720 14 O -0.474 6.474 15 C -0.005 4.005 16 N -0.367 5.367 17 C 0.145 3.855 18 C -0.277 4.277 19 C -0.065 4.065 20 C -0.224 4.224 21 C 0.014 3.986 22 C -0.212 4.212 23 C -0.250 4.250 24 C -0.082 4.082 25 N -0.176 5.176 26 C -0.065 4.065 27 H 0.057 0.943 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.122 0.878 32 H 0.044 0.956 33 H 0.014 0.986 34 H 0.076 0.924 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.235 0.765 38 H 0.154 0.846 39 H 0.171 0.829 40 H 0.154 0.846 41 H 0.151 0.849 42 H 0.215 0.785 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.041 -7.242 25.711 27.183 hybrid contribution 1.016 0.936 -1.186 1.821 sum -4.025 -6.306 24.524 25.640 Atomic orbital electron populations 1.22167 0.94390 1.03756 1.01695 1.21849 0.95456 0.80957 1.04396 1.48228 1.63274 1.15266 1.05934 1.18739 0.95425 0.91542 0.80243 1.21691 0.97834 1.32041 1.06538 0.92866 1.25853 1.02381 0.94448 0.96451 1.70050 1.37793 1.34180 1.14769 0.85416 0.78976 0.78241 0.78182 1.18662 1.20679 1.19906 1.21116 0.77547 0.86639 0.86729 1.90627 1.48389 1.20664 1.87715 1.21142 1.03527 0.93168 0.82635 1.44486 1.73325 1.16993 1.01925 1.17510 0.92927 0.92924 0.82169 1.20605 1.13707 0.94769 0.98659 1.20844 0.95619 0.99511 0.90559 1.20011 1.10805 0.91242 1.00363 1.18291 1.00660 0.91049 0.88572 1.19010 1.13275 0.96336 0.92529 1.21725 1.11057 0.95262 0.96975 1.22133 1.02760 0.93085 0.90246 1.44123 1.56081 1.10229 1.07118 1.22179 1.04286 1.05192 0.74883 0.94266 0.88278 0.92193 0.90514 0.87816 0.95622 0.98551 0.92386 0.87542 0.86998 0.76455 0.84626 0.82930 0.84616 0.84866 0.78458 0.90393 0.89268 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 10.24 71.98 0.74 -3.12 16 2 C 0.10 2.80 5.93 86.38 0.51 3.31 16 3 N -0.60 -25.08 2.46 -826.16 -2.03 -27.11 16 4 C 0.26 14.20 5.16 85.63 0.44 14.64 16 5 C -0.54 -31.48 9.39 25.60 0.24 -31.24 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.45 5.46 84.65 0.46 0.91 16 8 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 9 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 10 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 13 C 0.49 20.64 7.74 87.66 0.68 21.31 16 14 O -0.59 -31.04 15.25 -3.03 -0.05 -31.08 16 15 C 0.12 3.67 3.95 85.64 0.34 4.01 16 16 N -0.74 -24.18 5.70 -342.58 -1.95 -26.13 16 17 C 0.25 7.47 6.68 38.41 0.26 7.72 16 18 C -0.25 -6.12 9.31 22.41 0.21 -5.91 16 19 C -0.05 -0.92 10.00 22.27 0.22 -0.69 16 20 C -0.20 -4.21 9.94 22.40 0.22 -3.99 16 21 C 0.12 3.08 6.80 39.02 0.27 3.35 16 22 C -0.20 -6.12 6.27 -20.11 -0.13 -6.25 16 23 C -0.23 -6.27 10.86 23.50 0.26 -6.01 16 24 C 0.04 0.89 11.29 82.97 0.94 1.82 16 25 N -0.49 -9.82 3.18 -539.24 -1.72 -11.54 16 26 C 0.07 0.74 11.03 127.77 1.41 2.15 16 27 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.06 1.34 7.22 -2.39 -0.02 1.32 16 30 H 0.08 2.39 8.07 -2.39 -0.02 2.37 16 31 H 0.10 2.27 6.44 -2.39 -0.02 2.26 16 32 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 33 H 0.00 -0.23 7.42 -2.39 -0.02 -0.25 16 34 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.11 2.71 7.21 -2.39 -0.02 2.70 16 36 H 0.11 2.72 6.99 -2.39 -0.02 2.70 16 37 H 0.40 14.94 7.27 -92.71 -0.67 14.26 16 38 H 0.14 2.71 6.72 -2.91 -0.02 2.69 16 39 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 41 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 42 H 0.20 2.51 8.06 -2.91 -0.02 2.48 16 43 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.09 0.71 8.09 -2.39 -0.02 0.69 16 45 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 Total: -1.00 -80.03 375.22 3.95 -76.08 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.32 Total: 26.70 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 7.06 Total: 2.00 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -5.41 Total: -121.09 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.05 Total: -31.08 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -80.03 3.95 -76.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088532842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.845 kcal (2) G-P(sol) polarization free energy of solvation -80.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds