Wall clock time and date at job start Tue Mar 31 2020 11:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00219 * 2 1 4 4 C 1.52999 * 109.46985 * 184.73396 * 3 2 1 5 5 N 1.46907 * 109.46822 * 69.07317 * 4 3 2 6 6 C 1.46901 * 110.99971 * 286.33057 * 5 4 3 7 7 C 1.50695 * 109.47484 * 302.80861 * 6 5 4 8 8 H 1.08007 * 119.99847 * 4.43757 * 7 6 5 9 9 C 1.37874 * 120.00535 * 184.44096 * 7 6 5 10 10 N 1.31520 * 119.99628 * 354.85884 * 9 7 6 11 11 Si 1.86797 * 120.00538 * 174.85697 * 9 7 6 12 12 H 1.48506 * 109.47028 * 65.00118 * 11 9 7 13 13 H 1.48500 * 109.47248 * 185.00105 * 11 9 7 14 14 H 1.48497 * 109.47058 * 305.00565 * 11 9 7 15 15 C 1.46902 * 110.99792 * 162.38184 * 5 4 3 16 16 C 1.50700 * 109.47017 * 189.99678 * 15 5 4 17 17 C 1.38295 * 119.96948 * 270.02262 * 16 15 5 18 18 C 1.38251 * 120.13818 * 179.97438 * 17 16 15 19 19 C 1.38154 * 120.06341 * 0.02562 * 18 17 16 20 20 C 1.38808 * 119.93107 * 359.69850 * 19 18 17 21 21 N 1.40179 * 120.06794 * 180.29975 * 20 19 18 22 22 C 1.35231 * 126.05301 * 0.25527 * 21 20 19 23 23 C 1.35318 * 107.71289 * 179.97438 * 22 21 20 24 24 C 1.39921 * 107.93471 * 359.97438 * 23 22 21 25 25 N 1.30876 * 108.24191 * 359.75611 * 24 23 22 26 26 C 1.38099 * 119.96226 * 89.99943 * 16 15 5 27 27 H 1.08994 * 109.47135 * 184.94162 * 1 2 3 28 28 H 1.08998 * 109.46615 * 304.94581 * 1 2 3 29 29 H 1.08998 * 109.46812 * 64.93987 * 1 2 3 30 30 H 1.09002 * 109.46660 * 64.73701 * 3 2 1 31 31 H 1.08992 * 109.47040 * 304.73564 * 3 2 1 32 32 H 1.08998 * 109.47373 * 309.07094 * 4 3 2 33 33 H 1.08997 * 109.47113 * 189.06952 * 4 3 2 34 34 H 1.09008 * 109.46697 * 62.80535 * 6 5 4 35 35 H 1.08993 * 109.46944 * 182.80389 * 6 5 4 36 36 H 0.96992 * 120.00237 * 179.97438 * 10 9 7 37 37 H 1.08994 * 109.47235 * 69.99816 * 15 5 4 38 38 H 1.08998 * 109.47173 * 309.99666 * 15 5 4 39 39 H 1.08003 * 119.93449 * 359.97438 * 17 16 15 40 40 H 1.08001 * 119.97183 * 179.97438 * 18 17 16 41 41 H 1.08000 * 120.03186 * 179.97438 * 19 18 17 42 42 H 1.08003 * 126.14098 * 359.95760 * 22 21 20 43 43 H 1.08001 * 126.02981 * 179.97438 * 23 22 21 44 44 H 1.08001 * 125.88403 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.03931 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5310 1.1865 -0.1190 5 7 3.8805 0.6990 -1.4601 6 6 3.5687 -0.7299 -1.5985 7 6 4.2988 -1.5088 -0.5350 8 1 4.8737 -0.9883 0.2167 9 6 4.2329 -2.8859 -0.5215 10 7 3.4531 -3.5153 -1.3732 11 14 5.2513 -3.8578 0.7064 12 1 4.7854 -3.5568 2.0840 13 1 5.0970 -5.3101 0.4380 14 1 6.6810 -3.4789 0.5736 15 6 5.2937 0.9612 -1.7638 16 6 5.5557 0.6766 -3.2203 17 6 5.9441 -0.5898 -3.6177 18 6 6.1848 -0.8549 -4.9530 19 6 6.0384 0.1454 -5.8946 20 6 5.6430 1.4160 -5.4994 21 7 5.4874 2.4315 -6.4532 22 6 5.6840 2.3089 -7.7855 23 6 5.4299 3.5115 -8.3515 24 6 5.0655 4.3988 -7.3327 25 7 5.0943 3.7512 -6.1958 26 6 5.4071 1.6805 -4.1568 27 1 -0.3633 -1.0238 0.0885 28 1 -0.3632 0.5887 0.8424 29 1 -0.3633 0.4353 -0.9309 30 1 1.7574 1.8157 0.9294 31 1 1.6232 1.8755 -0.8445 32 1 3.9005 0.4861 0.6300 33 1 3.9856 2.1640 0.0420 34 1 2.4949 -0.8799 -1.4861 35 1 3.8829 -1.0765 -2.5830 36 1 3.4070 -4.4841 -1.3640 37 1 5.9229 0.3177 -1.1489 38 1 5.5235 2.0051 -1.5505 39 1 6.0597 -1.3734 -2.8834 40 1 6.4885 -1.8447 -5.2604 41 1 6.2270 -0.0621 -6.9375 42 1 5.9892 1.4123 -8.3045 43 1 5.4966 3.7452 -9.4038 44 1 4.8021 5.4381 -7.4627 45 1 5.1029 2.6691 -3.8460 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093099904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:14 Heat of formation + Delta-G solvation = 78.415290 kcal Electronic energy + Delta-G solvation = -26286.558064 eV Core-core repulsion = 22692.642916 eV Total energy + Delta-G solvation = -3593.915148 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41454 -39.04663 -37.60246 -35.96584 -33.31540 -32.41092 -31.41490 -30.29999 -29.11486 -28.45280 -26.97116 -25.69180 -24.39376 -23.27073 -22.78986 -21.81856 -20.48200 -20.15595 -19.48873 -17.73913 -16.44410 -15.86644 -15.79401 -15.55391 -15.15274 -15.10400 -14.90111 -14.49038 -14.13957 -14.00729 -13.64438 -13.56161 -13.25894 -13.07030 -12.67736 -12.33396 -12.23876 -11.84578 -11.44258 -11.33267 -11.23542 -10.99795 -10.84053 -10.74000 -10.69145 -10.57758 -10.39014 -10.11461 -9.93069 -9.78807 -9.47555 -9.08576 -8.89936 -8.49886 -8.24214 -7.76682 -7.10289 -5.90791 -3.95526 1.09856 1.66896 2.38993 2.48813 2.76357 3.32174 3.37657 3.40001 4.09093 4.48210 4.53158 4.55467 4.73647 5.05800 5.12575 5.19495 5.38352 5.39913 5.52745 5.63766 5.66165 5.68606 5.80663 5.83321 5.88133 5.91714 5.92182 5.96546 6.06518 6.17161 6.21449 6.24309 6.33304 6.41113 6.57467 6.67820 6.77479 6.81906 7.01085 7.13609 7.37543 7.43577 7.68223 7.74005 7.92290 8.11134 8.14017 8.38845 8.45462 9.12692 9.67040 11.14717 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013443 B = 0.003951 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.370669 B = 7085.525305 C = 8405.437484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.353 6.353 3 C 0.072 3.928 4 C 0.056 3.944 5 N -0.535 5.535 6 C 0.177 3.823 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.069 3.931 10 N -0.888 5.888 11 Si 0.878 3.122 12 H -0.280 1.280 13 H -0.289 1.289 14 H -0.279 1.279 15 C 0.094 3.906 16 C -0.035 4.035 17 C -0.093 4.093 18 C -0.100 4.100 19 C -0.146 4.146 20 C 0.134 3.866 21 N -0.309 5.309 22 C 0.052 3.948 23 C -0.272 4.272 24 C 0.044 3.956 25 N -0.288 5.288 26 C -0.100 4.100 27 H 0.079 0.921 28 H 0.027 0.973 29 H 0.032 0.968 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.032 0.968 36 H 0.259 0.741 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.141 0.859 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.175 0.825 43 H 0.149 0.851 44 H 0.185 0.815 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.721 10.962 -8.799 14.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C -0.005 4.005 4 C -0.073 4.073 5 N -0.259 5.259 6 C 0.052 3.948 7 C -0.572 4.572 8 H 0.070 0.930 9 C -0.133 4.133 10 N -0.527 5.527 11 Si 0.706 3.294 12 H -0.205 1.205 13 H -0.214 1.214 14 H -0.204 1.204 15 C -0.034 4.034 16 C -0.036 4.036 17 C -0.111 4.111 18 C -0.119 4.119 19 C -0.167 4.167 20 C 0.043 3.957 21 N -0.084 5.084 22 C -0.092 4.092 23 C -0.301 4.301 24 C -0.143 4.143 25 N -0.107 5.107 26 C -0.120 4.120 27 H 0.098 0.902 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.159 0.841 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.192 0.808 43 H 0.167 0.833 44 H 0.202 0.798 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.302 10.897 -7.879 13.643 hybrid contribution 0.815 -0.995 0.253 1.311 sum 3.117 9.902 -7.626 12.881 Atomic orbital electron populations 1.22626 0.83340 1.01965 0.98571 1.88320 1.17504 1.26529 1.94751 1.22454 0.94567 0.85295 0.98192 1.22016 0.93401 0.99005 0.92862 1.62675 1.15864 1.22377 1.24966 1.20065 0.98723 0.79770 0.96219 1.21569 1.30591 0.91697 1.13378 0.93048 1.24836 0.95270 0.97734 0.95488 1.69953 1.37502 1.08311 1.36900 0.86890 0.80933 0.79271 0.82269 1.20549 1.21424 1.20439 1.20918 0.92166 0.99522 0.90815 1.19749 0.95507 0.92500 0.95867 1.21482 0.96479 0.96931 0.96245 1.20928 0.99796 0.98313 0.92824 1.20641 1.04838 0.91249 0.99990 1.17490 1.04047 0.86005 0.88116 1.45935 1.49741 1.07888 1.04839 1.22607 1.01757 1.00638 0.84225 1.21519 1.14804 0.93011 1.00802 1.24000 0.99710 1.00470 0.90089 1.77476 1.21239 0.88393 1.23620 1.20686 1.00865 1.00648 0.89847 0.90242 0.95424 0.94938 0.94600 0.93671 0.92012 0.91970 0.92415 0.95045 0.93134 0.92661 0.92092 0.84097 0.85385 0.86107 0.80819 0.83282 0.79764 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.35 -7.42 7.93 -35.23 -0.28 -7.70 16 3 C 0.07 1.30 6.21 37.16 0.23 1.53 16 4 C 0.06 1.06 5.33 -3.82 -0.02 1.04 16 5 N -0.53 -11.22 4.65 -237.52 -1.10 -12.32 16 6 C 0.18 4.43 4.44 -4.98 -0.02 4.41 16 7 C -0.53 -14.05 7.35 -34.44 -0.25 -14.30 16 8 H 0.05 1.35 5.95 -52.48 -0.31 1.04 16 9 C 0.07 1.88 5.45 -17.82 -0.10 1.78 16 10 N -0.89 -25.55 13.29 55.43 0.74 -24.82 16 11 Si 0.88 21.09 29.54 -169.99 -5.02 16.07 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 15 C 0.09 1.77 4.96 -4.97 -0.02 1.74 16 16 C -0.04 -0.64 4.90 -104.65 -0.51 -1.16 16 17 C -0.09 -1.70 7.87 -39.56 -0.31 -2.01 16 18 C -0.10 -1.56 10.04 -39.61 -0.40 -1.96 16 19 C -0.15 -2.13 9.46 -39.40 -0.37 -2.50 16 20 C 0.13 2.19 6.69 -83.60 -0.56 1.63 16 21 N -0.31 -4.71 3.80 -10.70 -0.04 -4.75 16 22 C 0.05 0.62 10.80 -17.09 -0.18 0.44 16 23 C -0.27 -2.93 10.80 -39.99 -0.43 -3.37 16 24 C 0.04 0.52 12.03 -17.33 -0.21 0.31 16 25 N -0.29 -4.46 11.87 30.64 0.36 -4.10 16 26 C -0.10 -1.75 9.31 -39.40 -0.37 -2.12 16 27 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.32 5.86 -51.93 -0.30 1.02 16 33 H 0.06 1.00 7.78 -51.93 -0.40 0.60 16 34 H 0.06 1.61 5.69 -51.92 -0.30 1.32 16 35 H 0.03 0.84 5.69 -51.93 -0.30 0.55 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.06 1.11 6.80 -51.93 -0.35 0.76 16 38 H 0.06 1.01 7.79 -51.93 -0.40 0.61 16 39 H 0.14 2.87 7.93 -52.48 -0.42 2.45 16 40 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.12 1.37 6.74 -52.49 -0.35 1.02 16 42 H 0.17 1.51 7.04 -52.48 -0.37 1.14 16 43 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.19 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.13 2.32 7.70 -52.49 -0.40 1.92 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -31.64 367.19 -8.66 -40.30 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.43 Total: 4.68 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -2.42 Total: -12.90 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.04 Total: -45.98 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.28 Total: -7.70 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.64 -8.66 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093099904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.716 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds