Wall clock time and date at job start Tue Mar 31 2020 11:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00219 * 2 1 4 4 C 1.52999 * 109.46985 * 184.73396 * 3 2 1 5 5 N 1.46907 * 109.46822 * 69.07317 * 4 3 2 6 6 C 1.46901 * 110.99971 * 286.33057 * 5 4 3 7 7 C 1.50695 * 109.47484 * 302.80861 * 6 5 4 8 8 H 1.08007 * 119.99847 * 4.43757 * 7 6 5 9 9 C 1.37874 * 120.00535 * 184.44096 * 7 6 5 10 10 N 1.31520 * 119.99628 * 354.85884 * 9 7 6 11 11 Si 1.86797 * 120.00538 * 174.85697 * 9 7 6 12 12 H 1.48506 * 109.47028 * 65.00118 * 11 9 7 13 13 H 1.48500 * 109.47248 * 185.00105 * 11 9 7 14 14 H 1.48497 * 109.47058 * 305.00565 * 11 9 7 15 15 C 1.46902 * 110.99792 * 162.38184 * 5 4 3 16 16 C 1.50700 * 109.47017 * 189.99678 * 15 5 4 17 17 C 1.38295 * 119.96948 * 270.02262 * 16 15 5 18 18 C 1.38251 * 120.13818 * 179.97438 * 17 16 15 19 19 C 1.38154 * 120.06341 * 0.02562 * 18 17 16 20 20 C 1.38808 * 119.93107 * 359.69850 * 19 18 17 21 21 N 1.40179 * 120.06794 * 180.29975 * 20 19 18 22 22 C 1.35231 * 126.05301 * 0.25527 * 21 20 19 23 23 C 1.35318 * 107.71289 * 179.97438 * 22 21 20 24 24 C 1.39921 * 107.93471 * 359.97438 * 23 22 21 25 25 N 1.30876 * 108.24191 * 359.75611 * 24 23 22 26 26 C 1.38099 * 119.96226 * 89.99943 * 16 15 5 27 27 H 1.08994 * 109.47135 * 184.94162 * 1 2 3 28 28 H 1.08998 * 109.46615 * 304.94581 * 1 2 3 29 29 H 1.08998 * 109.46812 * 64.93987 * 1 2 3 30 30 H 1.09002 * 109.46660 * 64.73701 * 3 2 1 31 31 H 1.08992 * 109.47040 * 304.73564 * 3 2 1 32 32 H 1.08998 * 109.47373 * 309.07094 * 4 3 2 33 33 H 1.08997 * 109.47113 * 189.06952 * 4 3 2 34 34 H 1.09008 * 109.46697 * 62.80535 * 6 5 4 35 35 H 1.08993 * 109.46944 * 182.80389 * 6 5 4 36 36 H 0.96992 * 120.00237 * 179.97438 * 10 9 7 37 37 H 1.08994 * 109.47235 * 69.99816 * 15 5 4 38 38 H 1.08998 * 109.47173 * 309.99666 * 15 5 4 39 39 H 1.08003 * 119.93449 * 359.97438 * 17 16 15 40 40 H 1.08001 * 119.97183 * 179.97438 * 18 17 16 41 41 H 1.08000 * 120.03186 * 179.97438 * 19 18 17 42 42 H 1.08003 * 126.14098 * 359.95760 * 22 21 20 43 43 H 1.08001 * 126.02981 * 179.97438 * 23 22 21 44 44 H 1.08001 * 125.88403 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.03931 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5310 1.1865 -0.1190 5 7 3.8805 0.6990 -1.4601 6 6 3.5687 -0.7299 -1.5985 7 6 4.2988 -1.5088 -0.5350 8 1 4.8737 -0.9883 0.2167 9 6 4.2329 -2.8859 -0.5215 10 7 3.4531 -3.5153 -1.3732 11 14 5.2513 -3.8578 0.7064 12 1 4.7854 -3.5568 2.0840 13 1 5.0970 -5.3101 0.4380 14 1 6.6810 -3.4789 0.5736 15 6 5.2937 0.9612 -1.7638 16 6 5.5557 0.6766 -3.2203 17 6 5.9441 -0.5898 -3.6177 18 6 6.1848 -0.8549 -4.9530 19 6 6.0384 0.1454 -5.8946 20 6 5.6430 1.4160 -5.4994 21 7 5.4874 2.4315 -6.4532 22 6 5.6840 2.3089 -7.7855 23 6 5.4299 3.5115 -8.3515 24 6 5.0655 4.3988 -7.3327 25 7 5.0943 3.7512 -6.1958 26 6 5.4071 1.6805 -4.1568 27 1 -0.3633 -1.0238 0.0885 28 1 -0.3632 0.5887 0.8424 29 1 -0.3633 0.4353 -0.9309 30 1 1.7574 1.8157 0.9294 31 1 1.6232 1.8755 -0.8445 32 1 3.9005 0.4861 0.6300 33 1 3.9856 2.1640 0.0420 34 1 2.4949 -0.8799 -1.4861 35 1 3.8829 -1.0765 -2.5830 36 1 3.4070 -4.4841 -1.3640 37 1 5.9229 0.3177 -1.1489 38 1 5.5235 2.0051 -1.5505 39 1 6.0597 -1.3734 -2.8834 40 1 6.4885 -1.8447 -5.2604 41 1 6.2270 -0.0621 -6.9375 42 1 5.9892 1.4123 -8.3045 43 1 5.4966 3.7452 -9.4038 44 1 4.8021 5.4381 -7.4627 45 1 5.1029 2.6691 -3.8460 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093099904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:12 Heat of formation + Delta-G solvation = 58.890584 kcal Electronic energy + Delta-G solvation = -26287.404719 eV Core-core repulsion = 22692.642916 eV Total energy + Delta-G solvation = -3594.761803 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.39757 -40.37838 -39.09043 -37.52191 -34.62185 -34.31707 -32.73694 -31.33260 -30.52002 -29.71510 -28.76296 -27.06153 -26.11569 -24.48120 -24.33020 -23.05154 -21.60030 -21.51495 -20.87109 -18.93194 -18.32748 -17.37278 -17.14589 -17.03562 -16.63114 -16.30148 -16.18033 -15.89297 -15.58341 -15.55774 -15.09798 -14.73264 -14.48886 -14.37463 -14.07444 -13.58001 -13.53703 -13.34978 -12.97037 -12.94185 -12.74360 -12.64574 -12.50724 -12.40680 -12.18002 -12.01285 -11.79904 -11.58952 -11.50115 -11.45571 -11.17162 -10.53725 -10.19796 -10.06075 -9.79853 -8.97723 -8.84770 -7.99075 -6.11503 -0.04754 0.38553 1.29518 1.39391 1.40235 1.46976 1.47429 1.91720 2.45773 2.78571 3.14954 3.27274 3.50933 3.61517 3.87099 4.02330 4.04137 4.24393 4.26119 4.33533 4.42651 4.46050 4.51415 4.53693 4.59486 4.65455 4.73880 4.79722 4.81532 4.84775 4.89598 4.92628 5.07478 5.11774 5.19141 5.30049 5.45378 5.50158 5.64431 5.69526 5.78814 5.85796 6.03637 6.23711 6.29231 6.39354 6.52374 6.67310 6.72208 7.06599 7.54332 9.03831 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013443 B = 0.003951 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.370669 B = 7085.525305 C = 8405.437484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.398 6.398 3 C 0.072 3.928 4 C 0.053 3.947 5 N -0.536 5.536 6 C 0.199 3.801 7 C -0.528 4.528 8 H 0.048 0.952 9 C 0.020 3.980 10 N -0.922 5.922 11 Si 0.938 3.062 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.270 1.270 15 C 0.097 3.903 16 C -0.048 4.048 17 C -0.118 4.118 18 C -0.096 4.096 19 C -0.137 4.137 20 C 0.137 3.863 21 N -0.332 5.332 22 C 0.043 3.957 23 C -0.265 4.265 24 C 0.048 3.952 25 N -0.339 5.339 26 C -0.113 4.113 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.035 0.965 33 H 0.096 0.904 34 H 0.028 0.972 35 H 0.009 0.991 36 H 0.258 0.742 37 H 0.036 0.964 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.151 0.849 41 H 0.161 0.839 42 H 0.207 0.793 43 H 0.184 0.816 44 H 0.217 0.783 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.349 12.405 -10.506 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.317 6.317 3 C -0.004 4.004 4 C -0.075 4.075 5 N -0.260 5.260 6 C 0.073 3.927 7 C -0.567 4.567 8 H 0.067 0.933 9 C -0.179 4.179 10 N -0.563 5.563 11 Si 0.765 3.235 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.195 1.195 15 C -0.030 4.030 16 C -0.049 4.049 17 C -0.138 4.138 18 C -0.115 4.115 19 C -0.158 4.158 20 C 0.045 3.955 21 N -0.108 5.108 22 C -0.099 4.099 23 C -0.294 4.294 24 C -0.139 4.139 25 N -0.158 5.158 26 C -0.133 4.133 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.114 0.886 34 H 0.046 0.954 35 H 0.027 0.973 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.102 0.898 39 H 0.128 0.872 40 H 0.168 0.832 41 H 0.178 0.822 42 H 0.223 0.777 43 H 0.201 0.799 44 H 0.234 0.766 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.937 12.370 -9.591 15.925 hybrid contribution 0.599 -1.275 0.641 1.547 sum 3.535 11.095 -8.950 14.686 Atomic orbital electron populations 1.22745 0.81404 1.02360 1.00165 1.88248 1.19900 1.28444 1.95094 1.22552 0.93480 0.84535 0.99872 1.22155 0.94741 0.99799 0.90816 1.62594 1.17349 1.19709 1.26332 1.19597 0.96463 0.82065 0.94577 1.21756 1.29822 0.91960 1.13176 0.93348 1.25527 0.96321 0.98800 0.97220 1.70079 1.39139 1.08360 1.38695 0.85930 0.79828 0.77858 0.79927 1.20499 1.21201 1.19519 1.20924 0.90453 1.00329 0.91316 1.19675 0.96619 0.92950 0.95694 1.21320 0.98986 0.96298 0.97171 1.21173 0.98747 0.99755 0.91776 1.20972 1.03217 0.89981 1.01589 1.17656 1.02766 0.87080 0.88042 1.45987 1.51451 1.07707 1.05656 1.23334 1.01031 1.02476 0.83078 1.22003 1.13080 0.92102 1.02168 1.24714 0.97717 1.01892 0.89536 1.77451 1.23410 0.89131 1.25836 1.20594 1.02000 0.99989 0.90730 0.90799 0.92520 0.94256 0.91502 0.93295 0.94676 0.88611 0.95450 0.97341 0.93297 0.94615 0.89759 0.87190 0.83170 0.82158 0.77669 0.79861 0.76610 0.85701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 11.01 113.37 1.25 2.22 16 2 O -0.40 -17.00 7.93 -148.98 -1.18 -18.18 16 3 C 0.07 2.57 6.21 71.98 0.45 3.01 16 4 C 0.05 2.02 5.33 86.30 0.46 2.48 16 5 N -0.54 -23.19 4.65 -905.37 -4.21 -27.39 16 6 C 0.20 10.43 4.44 85.56 0.38 10.81 16 7 C -0.53 -28.90 7.35 25.60 0.19 -28.71 16 8 H 0.05 2.63 5.95 -2.91 -0.02 2.62 16 9 C 0.02 1.13 5.45 84.65 0.46 1.59 16 10 N -0.92 -54.94 13.29 21.45 0.29 -54.65 16 11 Si 0.94 44.33 29.54 68.60 2.03 46.36 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 14 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 15 C 0.10 3.80 4.96 85.56 0.42 4.23 16 16 C -0.05 -1.84 4.90 -19.88 -0.10 -1.94 16 17 C -0.12 -4.55 7.87 22.29 0.18 -4.38 16 18 C -0.10 -2.97 10.04 22.25 0.22 -2.75 16 19 C -0.14 -3.74 9.46 22.39 0.21 -3.53 16 20 C 0.14 4.33 6.69 38.09 0.25 4.58 16 21 N -0.33 -9.59 3.80 -187.76 -0.71 -10.30 16 22 C 0.04 0.89 10.80 83.50 0.90 1.79 16 23 C -0.27 -4.73 10.80 22.00 0.24 -4.49 16 24 C 0.05 1.01 12.03 85.24 1.03 2.04 16 25 N -0.34 -10.10 11.87 -56.97 -0.68 -10.78 16 26 C -0.11 -4.01 9.31 22.39 0.21 -3.80 16 27 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.03 1.53 5.86 -2.39 -0.01 1.52 16 33 H 0.10 2.97 7.78 -2.39 -0.02 2.95 16 34 H 0.03 1.62 5.69 -2.38 -0.01 1.60 16 35 H 0.01 0.48 5.69 -2.39 -0.01 0.47 16 36 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 37 H 0.04 1.51 6.80 -2.39 -0.02 1.50 16 38 H 0.08 2.83 7.79 -2.39 -0.02 2.81 16 39 H 0.11 4.84 7.93 -2.91 -0.02 4.81 16 40 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 41 H 0.16 3.01 6.74 -2.91 -0.02 2.99 16 42 H 0.21 2.65 7.04 -2.91 -0.02 2.63 16 43 H 0.18 1.91 8.06 -2.91 -0.02 1.88 16 44 H 0.22 2.82 8.06 -2.91 -0.02 2.80 16 45 H 0.13 4.52 7.70 -2.91 -0.02 4.50 16 Total: -1.00 -72.16 367.19 3.27 -68.89 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.99 Total: 22.90 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 6.75 Total: -16.83 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -5.31 Total: -103.12 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -1.18 Total: -18.18 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -72.16 3.27 -68.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093099904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.777 kcal (2) G-P(sol) polarization free energy of solvation -72.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds