Wall clock time and date at job start Tue Mar 31 2020 11:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46905 * 110.99995 * 2 1 4 4 C 1.50695 * 109.46944 * 66.04457 * 3 2 1 5 5 H 1.08001 * 120.00376 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99938 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00366 * 180.02562 * 6 4 3 8 8 Si 1.86807 * 119.99817 * 0.02562 * 6 4 3 9 9 H 1.48485 * 109.47144 * 89.99902 * 8 6 4 10 10 H 1.48504 * 109.46766 * 209.99962 * 8 6 4 11 11 H 1.48497 * 109.46901 * 329.99521 * 8 6 4 12 12 C 1.46897 * 110.99814 * 236.04544 * 2 1 3 13 13 C 1.50694 * 109.47330 * 293.95439 * 12 2 1 14 14 C 1.38265 * 119.94441 * 269.72548 * 13 12 2 15 15 C 1.38150 * 120.05364 * 179.72339 * 14 13 12 16 16 C 1.38732 * 119.94368 * 0.56877 * 15 14 13 17 17 O 1.35905 * 120.05356 * 179.68147 * 16 15 14 18 18 C 1.42900 * 116.99851 * 0.02562 * 17 16 15 19 19 C 1.50698 * 109.46820 * 179.97438 * 18 17 16 20 20 N 1.30498 * 125.65160 * 90.02737 * 19 18 17 21 21 C 1.34123 * 109.25850 * 179.97438 * 20 19 18 22 22 C 1.34663 * 108.02442 * 0.02562 * 21 20 19 23 23 N 1.35046 * 125.64891 * 269.72061 * 19 18 17 24 24 C 1.46493 * 126.39850 * 0.02562 * 23 19 18 25 25 C 1.38733 * 119.88807 * 359.70890 * 16 15 14 26 26 C 1.38139 * 119.94721 * 359.97438 * 25 16 15 27 27 H 1.08992 * 109.47459 * 183.95199 * 1 2 3 28 28 H 1.09004 * 109.47040 * 303.95350 * 1 2 3 29 29 H 1.09000 * 109.47033 * 63.95302 * 1 2 3 30 30 H 1.09002 * 109.46783 * 186.04686 * 3 2 1 31 31 H 1.09002 * 109.46955 * 306.04307 * 3 2 1 32 32 H 0.96993 * 120.00265 * 180.02562 * 7 6 4 33 33 H 1.09009 * 109.47296 * 53.95365 * 12 2 1 34 34 H 1.09002 * 109.47055 * 173.95064 * 12 2 1 35 35 H 1.07997 * 119.97125 * 359.97438 * 14 13 12 36 36 H 1.07998 * 120.02706 * 180.25565 * 15 14 13 37 37 H 1.08994 * 109.47229 * 299.99990 * 18 17 16 38 38 H 1.09002 * 109.46870 * 60.00340 * 18 17 16 39 39 H 1.07999 * 125.98991 * 180.02562 * 21 20 19 40 40 H 1.07996 * 126.59936 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.47292 * 90.00281 * 24 23 19 42 42 H 1.09002 * 109.47164 * 210.00130 * 24 23 19 43 43 H 1.09000 * 109.47199 * 329.99340 * 24 23 19 44 44 H 1.07995 * 120.02268 * 179.97438 * 25 16 15 45 45 H 1.07996 * 119.97620 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0746 1.5113 2.0488 6 6 2.0277 3.3492 1.5289 7 7 1.7152 3.9387 2.6622 8 14 3.0009 4.2758 0.2313 9 1 2.0645 4.9803 -0.6806 10 1 3.8881 5.2667 0.8919 11 1 3.8241 3.3170 -0.5486 12 6 1.9954 -0.7660 -1.1376 13 6 1.6369 -2.2204 -0.9729 14 6 2.4976 -3.0720 -0.3052 15 6 2.1685 -4.4045 -0.1480 16 6 0.9789 -4.8904 -0.6708 17 8 0.6560 -6.2022 -0.5230 18 6 1.5880 -7.0242 0.1825 19 6 1.0643 -8.4358 0.2470 20 7 1.2928 -9.3728 -0.6320 21 6 0.6702 -10.4980 -0.2512 22 6 0.0310 -10.2488 0.9076 23 7 0.2855 -8.9423 1.2272 24 6 -0.1997 -8.2262 2.4095 25 6 0.1198 -4.0350 -1.3453 26 6 0.4503 -2.7020 -1.4942 27 1 -0.3634 -1.0251 0.0708 28 1 -0.3633 0.5740 0.8525 29 1 -0.3633 0.4513 -0.9233 30 1 3.0798 1.3444 -0.1083 31 1 1.5612 1.9274 -0.8310 32 1 1.9898 4.8548 2.8242 33 1 1.5611 -0.3872 -2.0629 34 1 3.0797 -0.6611 -1.1757 35 1 3.4259 -2.6944 0.0971 36 1 2.8392 -5.0685 0.3772 37 1 2.5462 -7.0152 -0.3368 38 1 1.7190 -6.6391 1.1938 39 1 0.6797 -11.4391 -0.7811 40 1 -0.5636 -10.9470 1.4779 41 1 -1.1595 -7.7613 2.1842 42 1 -0.3207 -8.9277 3.2349 43 1 0.5200 -7.4569 2.6891 44 1 -0.8066 -4.4110 -1.7536 45 1 -0.2184 -2.0357 -2.0188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177191160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:10 Heat of formation + Delta-G solvation = 45.107415 kcal Electronic energy + Delta-G solvation = -24911.675591 eV Core-core repulsion = 21316.316105 eV Total energy + Delta-G solvation = -3595.359486 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.13846 -41.14833 -39.26561 -37.53192 -35.02384 -34.66179 -32.69678 -31.91136 -31.44994 -29.57240 -28.36338 -27.82113 -27.14389 -25.18972 -23.67864 -22.56896 -22.41820 -21.59359 -20.88826 -19.29114 -18.97585 -18.24578 -17.01541 -16.88077 -16.82257 -16.54530 -16.25702 -15.99990 -15.84565 -15.33097 -15.15399 -14.87547 -14.60984 -14.34735 -14.32466 -14.14277 -13.85022 -13.63470 -13.58344 -13.35086 -13.20158 -12.95643 -12.71044 -12.54000 -12.47852 -11.96746 -11.86329 -11.76125 -11.69852 -11.41618 -11.08350 -10.77936 -10.65816 -9.90050 -9.52295 -9.17697 -8.91502 -8.26821 -6.30092 0.41611 0.46799 0.79191 1.36153 1.37883 1.48770 1.71745 1.91669 2.35775 2.52456 2.74935 3.06429 3.33138 3.48967 3.69098 3.83875 3.91230 3.95771 3.99219 4.11090 4.21951 4.31711 4.36387 4.44535 4.51257 4.52594 4.61333 4.65510 4.66382 4.72288 4.73655 4.81405 4.93803 5.03970 5.13700 5.20474 5.23332 5.31472 5.41557 5.54269 5.74617 5.76515 5.79190 6.00023 6.08411 6.37064 6.39462 6.66686 6.76244 7.01511 7.33362 8.89731 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.029474 B = 0.002144 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.752324 B =13056.639132 C =13412.395739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.542 5.542 3 C 0.170 3.830 4 C -0.515 4.515 5 H 0.037 0.963 6 C 0.006 3.994 7 N -0.949 5.949 8 Si 0.948 3.052 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.247 1.247 12 C 0.093 3.907 13 C -0.114 4.114 14 C -0.067 4.067 15 C -0.205 4.205 16 C 0.118 3.882 17 O -0.325 6.325 18 C 0.148 3.852 19 C 0.172 3.828 20 N -0.511 5.511 21 C -0.058 4.058 22 C -0.033 4.033 23 N -0.448 5.448 24 C 0.060 3.940 25 C -0.157 4.157 26 C -0.075 4.075 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.022 0.978 30 H 0.032 0.968 31 H -0.012 1.012 32 H 0.266 0.734 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.131 0.869 36 H 0.149 0.851 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.190 0.810 40 H 0.217 0.783 41 H 0.084 0.916 42 H 0.117 0.883 43 H 0.095 0.905 44 H 0.137 0.863 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.642 -28.053 -4.726 28.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.266 5.266 3 C 0.043 3.957 4 C -0.553 4.553 5 H 0.055 0.945 6 C -0.191 4.191 7 N -0.590 5.590 8 Si 0.771 3.229 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.170 1.170 12 C -0.034 4.034 13 C -0.115 4.115 14 C -0.086 4.086 15 C -0.223 4.223 16 C 0.073 3.927 17 O -0.238 6.238 18 C 0.072 3.928 19 C -0.089 4.089 20 N -0.232 5.232 21 C -0.206 4.206 22 C -0.168 4.168 23 N -0.130 5.130 24 C -0.081 4.081 25 C -0.175 4.175 26 C -0.094 4.094 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.006 0.994 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.149 0.851 36 H 0.166 0.834 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.207 0.793 40 H 0.233 0.767 41 H 0.103 0.897 42 H 0.135 0.865 43 H 0.113 0.887 44 H 0.155 0.845 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.208 -28.013 -4.822 28.511 hybrid contribution -0.356 1.085 -0.038 1.142 sum -2.564 -26.929 -4.861 27.484 Atomic orbital electron populations 1.22214 0.87686 1.01101 0.99716 1.61872 1.08269 1.14485 1.41979 1.19980 0.95416 0.85689 0.94593 1.21264 1.34732 0.97466 1.01855 0.94467 1.25866 0.97051 0.98462 0.97749 1.70049 1.48669 1.13865 1.26372 0.85704 0.79237 0.78744 0.79188 1.19400 1.20776 1.17030 1.21053 1.00461 0.90111 0.91798 1.19746 0.95974 0.94882 1.00855 1.20992 0.99524 0.92472 0.95571 1.21373 0.97680 0.97154 1.06128 1.19014 0.94348 0.82620 0.96680 1.86074 1.47033 1.17571 1.73151 1.20800 0.91726 0.81829 0.98415 1.22624 1.00834 0.96346 0.89114 1.70146 1.24511 1.01237 1.27318 1.22831 1.01803 0.98264 0.97719 1.23438 1.06351 0.86315 1.00655 1.45565 1.36697 1.10948 1.19838 1.22429 1.01622 0.98816 0.85281 1.20492 1.00967 0.92569 1.03491 1.20986 0.95744 0.94458 0.98176 0.90769 0.93581 0.95940 0.94951 0.99444 0.92467 0.93966 0.90163 0.85068 0.83370 0.88578 0.88172 0.79307 0.76677 0.89726 0.86484 0.88671 0.84482 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.57 8.95 127.69 1.14 2.71 16 2 N -0.54 -22.24 4.74 -931.63 -4.42 -26.66 16 3 C 0.17 8.09 3.79 85.55 0.32 8.41 16 4 C -0.51 -29.77 9.01 25.60 0.23 -29.54 16 5 H 0.04 2.41 7.37 -2.91 -0.02 2.39 16 6 C 0.01 0.34 5.47 84.66 0.46 0.80 16 7 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 8 Si 0.95 43.75 27.47 68.60 1.88 45.64 16 9 H -0.27 -11.97 7.10 99.48 0.71 -11.26 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.25 -10.51 6.54 99.48 0.65 -9.85 16 12 C 0.09 3.00 5.12 85.56 0.44 3.44 16 13 C -0.11 -3.23 4.88 -19.85 -0.10 -3.33 16 14 C -0.07 -1.75 9.69 22.26 0.22 -1.54 16 15 C -0.20 -4.64 9.04 22.37 0.20 -4.44 16 16 C 0.12 2.86 6.69 22.51 0.15 3.01 16 17 O -0.32 -7.68 10.12 -92.48 -0.94 -8.61 16 18 C 0.15 2.75 5.05 71.24 0.36 3.11 16 19 C 0.17 3.60 7.53 138.13 1.04 4.64 16 20 N -0.51 -12.65 11.25 -188.14 -2.12 -14.77 16 21 C -0.06 -1.05 11.87 83.52 0.99 -0.06 16 22 C -0.03 -0.43 11.58 83.08 0.96 0.53 16 23 N -0.45 -6.75 3.15 -537.63 -1.69 -8.44 16 24 C 0.06 0.45 10.97 127.77 1.40 1.85 16 25 C -0.16 -3.82 9.99 22.36 0.22 -3.59 16 26 C -0.08 -1.92 7.96 22.25 0.18 -1.74 16 27 H 0.07 2.47 6.16 -2.39 -0.01 2.45 16 28 H 0.05 2.04 6.76 -2.38 -0.02 2.03 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.03 1.51 6.99 -2.39 -0.02 1.50 16 31 H -0.01 -0.56 7.55 -2.39 -0.02 -0.58 16 32 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 33 H 0.04 1.28 8.06 -2.38 -0.02 1.26 16 34 H 0.08 2.49 7.87 -2.39 -0.02 2.47 16 35 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 36 H 0.15 2.53 6.30 -2.91 -0.02 2.51 16 37 H 0.10 1.70 7.66 -2.39 -0.02 1.69 16 38 H 0.10 1.32 6.58 -2.39 -0.02 1.31 16 39 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16 40 H 0.22 0.90 8.06 -2.91 -0.02 0.88 16 41 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.09 0.61 7.04 -2.39 -0.02 0.59 16 44 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 45 H 0.14 3.10 8.03 -2.91 -0.02 3.08 16 Total: -1.00 -76.50 370.37 2.17 -74.34 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.92 Total: 13.27 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 8.23 Total: -15.74 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -7.93 Total: -108.90 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.94 Total: -8.61 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.64 kcal Total: -76.50 2.17 -74.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177191160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.444 kcal (2) G-P(sol) polarization free energy of solvation -76.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds