Wall clock time and date at job start Tue Mar 31 2020 10:53:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46504 * 109.47445 * 2 1
4 4 C 1.46501 * 119.99691 * 269.99748 * 3 2 1
5 5 C 1.50696 * 109.47079 * 269.99822 * 4 3 2
6 6 H 1.08004 * 120.00060 * 0.02562 * 5 4 3
7 7 C 1.37879 * 119.99754 * 180.02562 * 5 4 3
8 8 N 1.31507 * 119.99981 * 359.97438 * 7 5 4
9 9 Si 1.86806 * 119.99596 * 180.02562 * 7 5 4
10 10 H 1.48499 * 109.47040 * 59.99973 * 9 7 5
11 11 H 1.48500 * 109.46940 * 179.97438 * 9 7 5
12 12 H 1.48502 * 109.47099 * 299.99912 * 9 7 5
13 13 C 1.34776 * 119.99992 * 89.99639 * 3 2 1
14 14 O 1.21280 * 119.99780 * 180.02562 * 13 3 2
15 15 C 1.50700 * 120.00118 * 359.97438 * 13 3 2
16 16 N 1.46494 * 109.47166 * 179.97438 * 15 13 3
17 17 C 1.39801 * 120.00291 * 180.02562 * 16 15 13
18 18 C 1.39441 * 119.74783 * 0.02562 * 17 16 15
19 19 C 1.36523 * 120.45601 * 180.02562 * 18 17 16
20 20 C 1.39662 * 119.87163 * 359.97438 * 19 18 17
21 21 C 1.46572 * 133.91398 * 179.97438 * 20 19 18
22 22 C 1.34177 * 107.01654 * 179.97438 * 21 20 19
23 23 N 1.37003 * 109.91736 * 0.02562 * 22 21 20
24 24 C 1.46499 * 125.07497 * 179.97438 * 23 22 21
25 25 C 1.37706 * 109.84948 * 0.23788 * 23 22 21
26 26 C 1.38376 * 119.75127 * 180.02562 * 17 16 15
27 27 H 1.09003 * 109.47288 * 300.00705 * 1 2 3
28 28 H 1.09006 * 109.46630 * 60.00118 * 1 2 3
29 29 H 1.09000 * 109.47243 * 179.97438 * 1 2 3
30 30 H 1.08994 * 109.47448 * 239.99216 * 2 1 3
31 31 H 1.09006 * 109.46630 * 119.99882 * 2 1 3
32 32 H 1.09002 * 109.46711 * 30.00116 * 4 3 2
33 33 H 1.09001 * 109.46839 * 149.99769 * 4 3 2
34 34 H 0.97001 * 119.99761 * 180.02562 * 8 7 5
35 35 H 1.08998 * 109.46912 * 60.00201 * 15 13 3
36 36 H 1.08997 * 109.47515 * 300.00491 * 15 13 3
37 37 H 0.97003 * 119.99842 * 0.02562 * 16 15 13
38 38 H 1.08004 * 119.77254 * 359.97438 * 18 17 16
39 39 H 1.08009 * 120.06374 * 180.02562 * 19 18 17
40 40 H 1.08003 * 126.49282 * 0.02562 * 21 20 19
41 41 H 1.07998 * 125.04100 * 179.97438 * 22 21 20
42 42 H 1.09002 * 109.47391 * 90.01928 * 24 23 22
43 43 H 1.09001 * 109.46813 * 330.01985 * 24 23 22
44 44 H 1.09004 * 109.47041 * 210.02112 * 24 23 22
45 45 H 1.08001 * 120.14144 * 0.02562 * 26 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2627 2.0717 -1.2688
5 6 3.6859 1.8349 -1.7037
6 1 4.3428 1.2301 -1.0961
7 6 4.1496 2.3903 -2.8774
8 7 3.3496 3.1263 -3.6176
9 14 5.9137 2.0960 -3.4169
10 1 6.1403 0.6393 -3.5952
11 1 6.1613 2.7960 -4.7030
12 1 6.8415 2.6183 -2.3818
13 6 2.2430 2.0166 1.1672
14 8 2.6469 3.1601 1.1672
15 6 1.9912 1.3064 2.4723
16 7 2.3092 2.2037 3.5858
17 6 2.1540 1.7644 4.9039
18 6 1.6966 0.4709 5.1527
19 6 1.5392 0.0271 6.4342
20 6 1.8383 0.8726 7.5048
21 6 1.7853 0.7252 8.9621
22 6 2.1977 1.8880 9.4896
23 7 2.5105 2.7697 8.4887
24 6 2.9949 4.1372 8.6924
25 6 2.2958 2.1806 7.2627
26 6 2.4554 2.6165 5.9517
27 1 -0.3634 0.5140 0.8899
28 1 -0.3633 0.5139 -0.8901
29 1 -0.3634 -1.0277 -0.0005
30 1 1.8934 -0.5139 -0.8898
31 1 1.8933 -0.5139 0.8901
32 1 1.5818 1.6876 -2.0284
33 1 2.0957 3.1410 -1.1385
34 1 3.6757 3.5167 -4.4435
35 1 2.6210 0.4187 2.5303
36 1 0.9432 1.0126 2.5298
37 1 2.6275 3.1027 3.4085
38 1 1.4644 -0.1842 4.3260
39 1 1.1848 -0.9762 6.6196
40 1 1.4741 -0.1532 9.5080
41 1 2.2713 2.0980 10.5464
42 1 4.0838 4.1332 8.7430
43 1 2.5894 4.5312 9.6243
44 1 2.6720 4.7646 7.8616
45 1 2.8089 3.6174 5.7523
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000190604651.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:53:15
Heat of formation + Delta-G solvation = 33.128072 kcal
Electronic energy + Delta-G solvation = -25356.087750 eV
Core-core repulsion = 21760.208800 eV
Total energy + Delta-G solvation = -3595.878949 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.19110 -39.40572 -37.75282 -35.48889 -34.42713 -32.87259 -32.39875 -30.43048
-30.16806 -28.95517 -27.26142 -26.42211 -25.48009 -23.08779 -22.79068 -22.44187
-20.95082 -20.03271 -18.63272 -17.32946 -17.14306 -16.48518 -16.24922 -15.86708
-15.42410 -15.25090 -15.01720 -14.70662 -14.17859 -14.08667 -13.64474 -13.48981
-13.36315 -13.27981 -12.94457 -12.84439 -12.69514 -12.50025 -12.20032 -12.04939
-11.73090 -11.61272 -11.41901 -11.22321 -10.96268 -10.85323 -10.77612 -10.56720
-10.17717 -9.90671 -9.70424 -9.09053 -9.04313 -8.46739 -7.83379 -7.77532
-6.98161 -6.07955 -4.12981 1.29624 1.81876 2.75140 2.75451 3.24422
3.30070 3.34433 3.37556 3.43021 3.99247 4.04864 4.41865 4.59290
4.75387 4.80956 4.91076 4.98550 5.15339 5.22928 5.26729 5.27215
5.38339 5.40461 5.44938 5.50191 5.58737 5.60636 5.69312 5.75377
5.89015 5.99576 6.06565 6.18803 6.33744 6.44775 6.59427 6.63951
6.85904 6.96122 7.17819 7.30838 7.36980 7.43928 7.49308 7.87783
7.92545 8.18442 8.31154 8.81100 8.96405 9.52142 11.00158
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.019956 B = 0.002600 C = 0.002428
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1402.763591 B =10767.902193 C =11530.358353
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.103 3.897
3 N -0.592 5.592
4 C 0.247 3.753
5 C -0.528 4.528
6 H 0.057 0.943
7 C 0.062 3.938
8 N -0.894 5.894
9 Si 0.899 3.101
10 H -0.276 1.276
11 H -0.286 1.286
12 H -0.276 1.276
13 C 0.500 3.500
14 O -0.539 6.539
15 C 0.105 3.895
16 N -0.730 5.730
17 C 0.250 3.750
18 C -0.210 4.210
19 C -0.025 4.025
20 C -0.168 4.168
21 C -0.190 4.190
22 C 0.026 3.974
23 N -0.494 5.494
24 C 0.081 3.919
25 C 0.149 3.851
26 C -0.227 4.227
27 H 0.051 0.949
28 H 0.061 0.939
29 H 0.062 0.938
30 H 0.085 0.915
31 H 0.066 0.934
32 H 0.034 0.966
33 H 0.043 0.957
34 H 0.264 0.736
35 H 0.084 0.916
36 H 0.084 0.916
37 H 0.411 0.589
38 H 0.122 0.878
39 H 0.121 0.879
40 H 0.141 0.859
41 H 0.161 0.839
42 H 0.065 0.935
43 H 0.078 0.922
44 H 0.079 0.921
45 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.550 -5.737 22.869 24.222
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.021 4.021
3 N -0.323 5.323
4 C 0.128 3.872
5 C -0.567 4.567
6 H 0.075 0.925
7 C -0.140 4.140
8 N -0.533 5.533
9 Si 0.726 3.274
10 H -0.202 1.202
11 H -0.212 1.212
12 H -0.202 1.202
13 C 0.286 3.714
14 O -0.417 6.417
15 C -0.023 4.023
16 N -0.362 5.362
17 C 0.144 3.856
18 C -0.232 4.232
19 C -0.045 4.045
20 C -0.173 4.173
21 C -0.215 4.215
22 C -0.098 4.098
23 N -0.180 5.180
24 C -0.061 4.061
25 C 0.042 3.958
26 C -0.254 4.254
27 H 0.070 0.930
28 H 0.080 0.920
29 H 0.081 0.919
30 H 0.104 0.896
31 H 0.084 0.916
32 H 0.052 0.948
33 H 0.061 0.939
34 H 0.074 0.926
35 H 0.102 0.898
36 H 0.102 0.898
37 H 0.249 0.751
38 H 0.140 0.860
39 H 0.139 0.861
40 H 0.159 0.841
41 H 0.179 0.821
42 H 0.084 0.916
43 H 0.097 0.903
44 H 0.098 0.902
45 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -5.280 -4.842 22.566 23.676
hybrid contribution 1.131 0.226 -0.475 1.247
sum -4.149 -4.616 22.091 22.947
Atomic orbital electron populations
1.22231 0.96552 1.01633 1.02432 1.21484 0.93687 0.83945 1.02978
1.48229 1.63188 1.13370 1.07545 1.19304 0.96395 0.93647 0.77895
1.21379 0.96851 1.32097 1.06385 0.92496 1.24932 0.97895 0.94863
0.96359 1.69917 1.35755 1.33296 1.14353 0.86553 0.84715 0.78292
0.77834 1.20207 1.21155 1.20179 1.20191 0.78888 0.87071 0.85245
1.90659 1.46169 1.18077 1.86802 1.21173 1.01498 0.93685 0.85939
1.44486 1.73262 1.17402 1.01069 1.17329 0.92352 0.92238 0.83712
1.20260 1.10331 0.95440 0.97181 1.20003 0.95810 0.98059 0.90595
1.18996 1.10659 0.94255 0.93399 1.21591 1.09589 0.98253 0.92065
1.21629 1.04741 0.90246 0.93135 1.43784 1.57664 1.12347 1.04166
1.21874 0.99991 0.80968 1.03277 1.17824 0.99563 0.92548 0.85824
1.19091 1.16987 1.00929 0.88421 0.92990 0.91957 0.91945 0.89638
0.91577 0.94794 0.93854 0.92615 0.89801 0.89821 0.75110 0.85965
0.86137 0.84123 0.82135 0.91594 0.90308 0.90220 0.86647
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.15 10.24 37.16 0.38 -1.77 16
2 C 0.10 1.56 5.93 -4.04 -0.02 1.53 16
3 N -0.59 -12.01 2.46 -175.06 -0.43 -12.44 16
4 C 0.25 6.30 5.16 -5.19 -0.03 6.28 16
5 C -0.53 -14.77 9.39 -34.44 -0.32 -15.10 16
6 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16
7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16
8 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16
9 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16
10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16
11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
13 C 0.50 10.03 7.74 -10.99 -0.09 9.94 16
14 O -0.54 -13.09 15.25 5.56 0.08 -13.00 16
15 C 0.11 1.56 3.93 -5.20 -0.02 1.54 16
16 N -0.73 -11.11 5.71 -59.78 -0.34 -11.45 16
17 C 0.25 3.53 6.65 -83.72 -0.56 2.98 16
18 C -0.21 -2.66 9.23 -39.75 -0.37 -3.02 16
19 C -0.03 -0.30 10.04 -39.67 -0.40 -0.70 16
20 C -0.17 -2.17 6.37 -105.09 -0.67 -2.84 16
21 C -0.19 -2.02 11.08 -37.65 -0.42 -2.44 16
22 C 0.03 0.24 11.29 -16.67 -0.19 0.06 16
23 N -0.49 -5.35 3.18 -121.78 -0.39 -5.74 16
24 C 0.08 0.59 11.03 59.85 0.66 1.25 16
25 C 0.15 1.99 6.80 -84.00 -0.57 1.42 16
26 C -0.23 -3.13 9.79 -39.22 -0.38 -3.51 16
27 H 0.05 0.63 7.22 -51.93 -0.37 0.25 16
28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
30 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16
31 H 0.07 0.81 6.44 -51.93 -0.33 0.48 16
32 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16
33 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16
34 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16
35 H 0.08 1.12 7.19 -51.93 -0.37 0.75 16
36 H 0.08 1.07 6.98 -51.93 -0.36 0.71 16
37 H 0.41 6.76 7.44 -40.82 -0.30 6.45 16
38 H 0.12 1.34 6.68 -52.48 -0.35 0.99 16
39 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16
40 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16
41 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16
42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
44 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16
45 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16
LS Contribution 375.40 15.07 5.66 5.66
Total: -1.00 -34.06 375.40 -9.46 -43.52
By element:
Atomic # 1 Polarization: 11.77 SS G_CDS: -6.67 Total: 5.10 kcal
Atomic # 6 Polarization: 0.35 SS G_CDS: -3.09 Total: -2.74 kcal
Atomic # 7 Polarization: -54.84 SS G_CDS: -0.42 Total: -55.26 kcal
Atomic # 8 Polarization: -13.09 SS G_CDS: 0.08 Total: -13.00 kcal
Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal
Total LS contribution 5.66 Total: 5.66 kcal
Total: -34.06 -9.46 -43.52 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000190604651.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.649 kcal
(2) G-P(sol) polarization free energy of solvation -34.060 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.589 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.521 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.128 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds