Wall clock time and date at job start Tue Mar 31 2020 10:53:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46504 * 109.47445 * 2 1
4 4 C 1.46501 * 119.99691 * 269.99748 * 3 2 1
5 5 C 1.50696 * 109.47079 * 269.99822 * 4 3 2
6 6 H 1.08004 * 120.00060 * 0.02562 * 5 4 3
7 7 C 1.37879 * 119.99754 * 180.02562 * 5 4 3
8 8 N 1.31507 * 119.99981 * 359.97438 * 7 5 4
9 9 Si 1.86806 * 119.99596 * 180.02562 * 7 5 4
10 10 H 1.48499 * 109.47040 * 59.99973 * 9 7 5
11 11 H 1.48500 * 109.46940 * 179.97438 * 9 7 5
12 12 H 1.48502 * 109.47099 * 299.99912 * 9 7 5
13 13 C 1.34776 * 119.99992 * 89.99639 * 3 2 1
14 14 O 1.21280 * 119.99780 * 180.02562 * 13 3 2
15 15 C 1.50700 * 120.00118 * 359.97438 * 13 3 2
16 16 N 1.46494 * 109.47166 * 179.97438 * 15 13 3
17 17 C 1.39801 * 120.00291 * 180.02562 * 16 15 13
18 18 C 1.39441 * 119.74783 * 0.02562 * 17 16 15
19 19 C 1.36523 * 120.45601 * 180.02562 * 18 17 16
20 20 C 1.39662 * 119.87163 * 359.97438 * 19 18 17
21 21 C 1.46572 * 133.91398 * 179.97438 * 20 19 18
22 22 C 1.34177 * 107.01654 * 179.97438 * 21 20 19
23 23 N 1.37003 * 109.91736 * 0.02562 * 22 21 20
24 24 C 1.46499 * 125.07497 * 179.97438 * 23 22 21
25 25 C 1.37706 * 109.84948 * 0.23788 * 23 22 21
26 26 C 1.38376 * 119.75127 * 180.02562 * 17 16 15
27 27 H 1.09003 * 109.47288 * 300.00705 * 1 2 3
28 28 H 1.09006 * 109.46630 * 60.00118 * 1 2 3
29 29 H 1.09000 * 109.47243 * 179.97438 * 1 2 3
30 30 H 1.08994 * 109.47448 * 239.99216 * 2 1 3
31 31 H 1.09006 * 109.46630 * 119.99882 * 2 1 3
32 32 H 1.09002 * 109.46711 * 30.00116 * 4 3 2
33 33 H 1.09001 * 109.46839 * 149.99769 * 4 3 2
34 34 H 0.97001 * 119.99761 * 180.02562 * 8 7 5
35 35 H 1.08998 * 109.46912 * 60.00201 * 15 13 3
36 36 H 1.08997 * 109.47515 * 300.00491 * 15 13 3
37 37 H 0.97003 * 119.99842 * 0.02562 * 16 15 13
38 38 H 1.08004 * 119.77254 * 359.97438 * 18 17 16
39 39 H 1.08009 * 120.06374 * 180.02562 * 19 18 17
40 40 H 1.08003 * 126.49282 * 0.02562 * 21 20 19
41 41 H 1.07998 * 125.04100 * 179.97438 * 22 21 20
42 42 H 1.09002 * 109.47391 * 90.01928 * 24 23 22
43 43 H 1.09001 * 109.46813 * 330.01985 * 24 23 22
44 44 H 1.09004 * 109.47041 * 210.02112 * 24 23 22
45 45 H 1.08001 * 120.14144 * 0.02562 * 26 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2627 2.0717 -1.2688
5 6 3.6859 1.8349 -1.7037
6 1 4.3428 1.2301 -1.0961
7 6 4.1496 2.3903 -2.8774
8 7 3.3496 3.1263 -3.6176
9 14 5.9137 2.0960 -3.4169
10 1 6.1403 0.6393 -3.5952
11 1 6.1613 2.7960 -4.7030
12 1 6.8415 2.6183 -2.3818
13 6 2.2430 2.0166 1.1672
14 8 2.6469 3.1601 1.1672
15 6 1.9912 1.3064 2.4723
16 7 2.3092 2.2037 3.5858
17 6 2.1540 1.7644 4.9039
18 6 1.6966 0.4709 5.1527
19 6 1.5392 0.0271 6.4342
20 6 1.8383 0.8726 7.5048
21 6 1.7853 0.7252 8.9621
22 6 2.1977 1.8880 9.4896
23 7 2.5105 2.7697 8.4887
24 6 2.9949 4.1372 8.6924
25 6 2.2958 2.1806 7.2627
26 6 2.4554 2.6165 5.9517
27 1 -0.3634 0.5140 0.8899
28 1 -0.3633 0.5139 -0.8901
29 1 -0.3634 -1.0277 -0.0005
30 1 1.8934 -0.5139 -0.8898
31 1 1.8933 -0.5139 0.8901
32 1 1.5818 1.6876 -2.0284
33 1 2.0957 3.1410 -1.1385
34 1 3.6757 3.5167 -4.4435
35 1 2.6210 0.4187 2.5303
36 1 0.9432 1.0126 2.5298
37 1 2.6275 3.1027 3.4085
38 1 1.4644 -0.1842 4.3260
39 1 1.1848 -0.9762 6.6196
40 1 1.4741 -0.1532 9.5080
41 1 2.2713 2.0980 10.5464
42 1 4.0838 4.1332 8.7430
43 1 2.5894 4.5312 9.6243
44 1 2.6720 4.7646 7.8616
45 1 2.8089 3.6174 5.7523
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000190604651.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:53:14
Heat of formation + Delta-G solvation = 12.504848 kcal
Electronic energy + Delta-G solvation = -25356.982040 eV
Core-core repulsion = 21760.208800 eV
Total energy + Delta-G solvation = -3596.773240 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-42.02611 -40.92818 -38.78935 -37.07045 -35.50393 -34.88561 -33.27952 -31.66165
-31.29312 -30.21138 -28.77844 -27.28309 -26.71131 -24.76276 -24.04626 -23.53304
-21.89518 -20.87993 -20.09137 -18.73295 -18.42903 -18.05373 -17.39930 -17.22863
-16.65444 -16.56495 -16.10938 -16.08048 -15.49643 -15.02808 -14.90953 -14.71560
-14.54680 -14.17281 -14.09895 -14.06012 -13.67543 -13.61503 -13.49232 -13.25708
-13.12743 -13.09301 -12.65658 -12.56614 -12.46187 -12.37165 -12.15418 -11.87716
-11.75945 -11.74953 -10.82793 -10.74113 -10.65683 -9.96717 -9.50416 -8.70176
-8.24169 -7.95192 -6.38799 0.39936 0.87492 1.35660 1.39617 1.46820
1.69769 1.92211 1.95996 2.17168 2.37945 2.69136 3.05757 3.10500
3.55027 3.90160 4.00931 4.09599 4.14045 4.27494 4.32133 4.36690
4.45738 4.46265 4.53410 4.56405 4.66635 4.70655 4.73843 4.86822
4.93818 4.99352 5.05948 5.11211 5.19063 5.20051 5.38313 5.41988
5.54963 5.67900 5.77137 5.82452 6.01865 6.03961 6.26252 6.42574
6.57829 6.66411 6.71539 6.79974 7.23257 7.38248 8.82899
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.019956 B = 0.002600 C = 0.002428
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1402.763591 B =10767.902193 C =11530.358353
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.095 3.905
3 N -0.597 5.597
4 C 0.262 3.738
5 C -0.543 4.543
6 H 0.054 0.946
7 C 0.008 3.992
8 N -0.928 5.928
9 Si 0.966 3.034
10 H -0.259 1.259
11 H -0.279 1.279
12 H -0.279 1.279
13 C 0.492 3.508
14 O -0.593 6.593
15 C 0.123 3.877
16 N -0.742 5.742
17 C 0.232 3.768
18 C -0.216 4.216
19 C -0.027 4.027
20 C -0.186 4.186
21 C -0.208 4.208
22 C 0.033 3.967
23 N -0.500 5.500
24 C 0.074 3.926
25 C 0.123 3.877
26 C -0.240 4.240
27 H 0.060 0.940
28 H 0.037 0.963
29 H 0.098 0.902
30 H 0.075 0.925
31 H 0.105 0.895
32 H 0.025 0.975
33 H -0.004 1.004
34 H 0.267 0.733
35 H 0.108 0.892
36 H 0.113 0.887
37 H 0.400 0.600
38 H 0.142 0.858
39 H 0.147 0.853
40 H 0.163 0.837
41 H 0.199 0.801
42 H 0.072 0.928
43 H 0.107 0.893
44 H 0.073 0.927
45 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.480 -8.135 25.270 27.107
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C -0.027 4.027
3 N -0.327 5.327
4 C 0.141 3.859
5 C -0.582 4.582
6 H 0.072 0.928
7 C -0.191 4.191
8 N -0.568 5.568
9 Si 0.791 3.209
10 H -0.184 1.184
11 H -0.204 1.204
12 H -0.205 1.205
13 C 0.280 3.720
14 O -0.475 6.475
15 C -0.004 4.004
16 N -0.374 5.374
17 C 0.128 3.872
18 C -0.238 4.238
19 C -0.046 4.046
20 C -0.192 4.192
21 C -0.233 4.233
22 C -0.091 4.091
23 N -0.185 5.185
24 C -0.067 4.067
25 C 0.015 3.985
26 C -0.268 4.268
27 H 0.079 0.921
28 H 0.057 0.943
29 H 0.117 0.883
30 H 0.094 0.906
31 H 0.123 0.877
32 H 0.043 0.957
33 H 0.014 0.986
34 H 0.076 0.924
35 H 0.125 0.875
36 H 0.130 0.870
37 H 0.236 0.764
38 H 0.160 0.840
39 H 0.165 0.835
40 H 0.180 0.820
41 H 0.216 0.784
42 H 0.091 0.909
43 H 0.125 0.875
44 H 0.092 0.908
45 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges -5.236 -7.295 25.006 26.569
hybrid contribution 1.075 1.007 -1.096 1.836
sum -4.161 -6.288 23.910 25.070
Atomic orbital electron populations
1.22171 0.94404 1.03745 1.01718 1.21851 0.95440 0.80961 1.04417
1.48231 1.63258 1.15276 1.05960 1.18732 0.95386 0.91538 0.80278
1.21673 0.97854 1.32081 1.06586 0.92790 1.25851 1.02346 0.94473
0.96453 1.70040 1.37803 1.34127 1.14803 0.85486 0.79041 0.79087
0.77314 1.18359 1.20379 1.20455 1.21131 0.77514 0.86633 0.86738
1.90627 1.48464 1.20653 1.87731 1.21133 1.03559 0.93187 0.82556
1.44502 1.74221 1.17031 1.01637 1.17506 0.93520 0.93202 0.83012
1.20493 1.10162 0.94923 0.98233 1.20343 0.95044 0.99123 0.90132
1.19496 1.10410 0.94294 0.94995 1.21941 1.10512 0.99720 0.91097
1.22307 1.02718 0.89535 0.94508 1.44125 1.57114 1.13546 1.03674
1.22094 1.00569 0.79511 1.04485 1.18040 1.00547 0.93495 0.86438
1.19201 1.17461 1.00944 0.89167 0.92087 0.94327 0.88321 0.90600
0.87711 0.95675 0.98552 0.92389 0.87489 0.86957 0.76374 0.84032
0.83486 0.81953 0.78384 0.90911 0.87457 0.90816 0.87155
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.76 10.24 71.98 0.74 -3.03 16
2 C 0.10 2.73 5.93 86.38 0.51 3.24 16
3 N -0.60 -24.58 2.46 -826.14 -2.03 -26.61 16
4 C 0.26 14.04 5.16 85.63 0.44 14.48 16
5 C -0.54 -31.22 9.39 25.60 0.24 -30.98 16
6 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16
7 C 0.01 0.45 5.46 84.66 0.46 0.92 16
8 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16
9 Si 0.97 44.98 29.54 68.60 2.03 47.00 16
10 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16
11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16
12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16
13 C 0.49 20.03 7.74 87.66 0.68 20.71 16
14 O -0.59 -30.33 15.25 -3.03 -0.05 -30.37 16
15 C 0.12 3.48 3.93 85.63 0.34 3.82 16
16 N -0.74 -22.64 5.71 -343.04 -1.96 -24.60 16
17 C 0.23 6.48 6.65 38.19 0.25 6.73 16
18 C -0.22 -5.06 9.23 22.16 0.20 -4.85 16
19 C -0.03 -0.60 10.04 22.21 0.22 -0.38 16
20 C -0.19 -4.53 6.37 -20.17 -0.13 -4.66 16
21 C -0.21 -3.92 11.08 23.52 0.26 -3.66 16
22 C 0.03 0.53 11.29 82.96 0.94 1.47 16
23 N -0.50 -10.06 3.18 -539.19 -1.72 -11.78 16
24 C 0.07 0.98 11.03 127.77 1.41 2.39 16
25 C 0.12 3.20 6.80 39.02 0.27 3.46 16
26 C -0.24 -6.75 9.79 22.50 0.22 -6.53 16
27 H 0.06 1.31 7.22 -2.39 -0.02 1.29 16
28 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16
29 H 0.10 1.60 8.14 -2.39 -0.02 1.59 16
30 H 0.08 2.33 8.07 -2.39 -0.02 2.31 16
31 H 0.10 2.20 6.44 -2.38 -0.02 2.18 16
32 H 0.03 1.37 8.07 -2.39 -0.02 1.35 16
33 H 0.00 -0.23 7.42 -2.39 -0.02 -0.25 16
34 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16
35 H 0.11 2.55 7.19 -2.39 -0.02 2.54 16
36 H 0.11 2.54 6.98 -2.39 -0.02 2.53 16
37 H 0.40 13.84 7.44 -92.71 -0.69 13.15 16
38 H 0.14 2.62 6.68 -2.91 -0.02 2.60 16
39 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16
40 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16
41 H 0.20 1.54 8.06 -2.91 -0.02 1.52 16
42 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16
43 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16
44 H 0.07 1.05 8.10 -2.38 -0.02 1.03 16
45 H 0.11 3.03 8.06 -2.91 -0.02 3.00 16
Total: -1.00 -78.45 375.40 3.92 -74.53
By element:
Atomic # 1 Polarization: 24.38 SS G_CDS: 0.31 Total: 24.69 kcal
Atomic # 6 Polarization: -3.93 SS G_CDS: 7.05 Total: 3.12 kcal
Atomic # 7 Polarization: -113.55 SS G_CDS: -5.42 Total: -118.97 kcal
Atomic # 8 Polarization: -30.33 SS G_CDS: -0.05 Total: -30.37 kcal
Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal
Total: -78.45 3.92 -74.53 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000190604651.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.035 kcal
(2) G-P(sol) polarization free energy of solvation -78.452 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.584 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.531 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.505 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds