Wall clock time and date at job start Tue Mar 31 2020 11:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46494 * 120.00186 * 2 1 4 4 C 1.52999 * 109.47613 * 270.00250 * 3 2 1 5 5 C 1.47195 * 109.47594 * 179.97438 * 4 3 2 6 6 N 4.80472 * 118.48589 * 340.02832 * 2 1 3 7 7 C 1.39671 * 119.99789 * 180.02562 * 2 1 3 8 8 C 1.38917 * 120.07585 * 359.97438 * 7 2 1 9 9 C 1.38095 * 119.92629 * 179.97438 * 8 7 2 10 10 C 1.38286 * 120.07485 * 0.02562 * 9 8 7 11 11 C 1.50699 * 119.92646 * 180.02562 * 10 9 8 12 12 N 1.46904 * 109.47392 * 89.99740 * 11 10 9 13 13 C 1.47960 * 110.99975 * 190.00152 * 12 11 10 14 14 C 1.53940 * 86.18020 * 222.41827 * 13 12 11 15 15 O 1.42900 * 113.73337 * 269.26005 * 14 13 12 16 16 C 1.50694 * 113.73364 * 138.08016 * 14 13 12 17 17 H 1.08000 * 120.00563 * 1.89939 * 16 14 13 18 18 C 1.37885 * 119.99902 * 181.90102 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.48189 * 111.06803 * 90.56563 * 12 11 10 25 25 C 1.38290 * 120.14945 * 0.27071 * 10 9 8 26 26 C 1.38099 * 120.07233 * 359.45780 * 25 10 9 27 27 H 1.08999 * 109.47317 * 269.99930 * 1 2 3 28 28 H 1.09005 * 109.46861 * 29.99639 * 1 2 3 29 29 H 1.08995 * 109.47246 * 149.99528 * 1 2 3 30 30 H 1.09006 * 109.47125 * 30.00244 * 3 2 1 31 31 H 1.09004 * 109.47333 * 149.99955 * 3 2 1 32 32 H 1.09000 * 109.47248 * 300.00390 * 4 3 2 33 33 H 1.09000 * 109.46908 * 60.00008 * 4 3 2 34 34 H 1.07997 * 120.03261 * 359.96537 * 8 7 2 35 35 H 1.07994 * 119.96608 * 180.02562 * 9 8 7 36 36 H 1.09003 * 109.46888 * 329.99903 * 11 10 9 37 37 H 1.09005 * 109.47315 * 210.00225 * 11 10 9 38 38 H 1.09000 * 113.75922 * 108.10132 * 13 12 11 39 39 H 1.08994 * 113.76148 * 336.73400 * 13 12 11 40 40 H 0.96699 * 113.99865 * 178.10203 * 15 14 13 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 42 42 H 1.08996 * 113.76245 * 23.24297 * 24 12 11 43 43 H 1.08999 * 113.82580 * 251.80952 * 24 12 11 44 44 H 1.08005 * 119.96158 * 179.70292 * 25 10 9 45 45 H 1.08008 * 120.03808 * 180.27074 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7105 -1.4424 5 6 3.1880 2.9855 -1.4424 6 7 3.7566 3.9691 -1.4424 7 6 2.1633 -1.2096 -0.0005 8 6 1.4703 -2.4136 -0.0005 9 6 2.1639 -3.6077 -0.0016 10 6 3.5467 -3.6060 -0.0021 11 6 4.3002 -4.9111 -0.0039 12 7 4.5445 -5.3337 -1.3895 13 6 5.0663 -6.7174 -1.4376 14 6 6.0471 -6.2007 -2.5057 15 8 5.5552 -6.3167 -3.8424 16 6 7.4494 -6.7293 -2.3479 17 1 7.6769 -7.4297 -1.5579 18 6 8.4423 -6.3186 -3.2120 19 7 8.1653 -5.4660 -4.1743 20 14 10.1808 -6.9733 -3.0159 21 1 11.0532 -6.3824 -4.0624 22 1 10.6993 -6.6067 -1.6736 23 1 10.1718 -8.4516 -3.1563 24 6 5.8370 -4.8067 -1.8871 25 6 4.2398 -2.4093 0.0040 26 6 3.5524 -1.2115 -0.0005 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6085 2.0283 0.5139 31 1 3.1500 1.1383 0.5138 32 1 3.0416 0.9508 -1.9564 33 1 1.5001 1.8409 -1.9562 34 1 0.3903 -2.4156 0.0004 35 1 1.6257 -4.5441 -0.0020 36 1 3.7113 -5.6713 0.5093 37 1 5.2528 -4.7814 0.5098 38 1 4.3480 -7.4447 -1.8161 39 1 5.5504 -7.0365 -0.5147 40 1 6.1561 -5.9667 -4.5143 41 1 8.8639 -5.1768 -4.7820 42 1 6.5470 -4.5659 -1.0959 43 1 5.7334 -4.0103 -2.6241 44 1 5.3198 -2.4115 0.0085 45 1 4.0943 -0.2772 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191917179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:04 Heat of formation + Delta-G solvation = 52.225881 kcal Electronic energy + Delta-G solvation = -25437.803075 eV Core-core repulsion = 21842.752269 eV Total energy + Delta-G solvation = -3595.050806 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.83707 -38.83820 -37.38962 -36.32396 -34.22322 -32.41438 -32.05082 -31.11063 -30.36357 -27.95753 -26.68974 -25.51875 -25.02308 -23.63656 -22.12894 -21.74920 -20.05567 -18.55848 -18.06879 -17.53287 -17.14359 -16.02737 -15.27469 -15.23028 -15.00563 -14.97431 -14.86282 -14.38205 -14.07480 -13.90603 -13.74337 -13.46782 -13.39406 -12.91274 -12.71115 -12.58814 -12.47155 -12.16432 -12.11343 -12.00607 -11.92631 -11.52444 -11.38186 -11.26805 -10.96887 -10.77351 -10.54404 -10.52761 -10.24475 -9.97569 -9.76643 -9.22580 -8.70967 -8.61486 -8.18367 -7.73656 -7.23653 -6.23353 -4.33361 1.65457 1.74959 2.38274 2.48626 2.87733 3.22058 3.27721 3.30004 3.77865 4.03183 4.27623 4.44519 4.61655 4.79705 4.92697 4.96014 5.02928 5.05202 5.08732 5.24241 5.27812 5.35171 5.45185 5.47569 5.56938 5.67851 5.81103 5.85496 6.01206 6.03673 6.18188 6.22508 6.36792 6.37801 6.48230 6.62583 6.73361 6.97549 7.00393 7.10300 7.12309 7.25097 7.28954 7.40115 7.48315 7.78346 8.02410 8.06653 8.68114 9.36512 9.65765 10.82205 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014692 B = 0.002901 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.398243 B = 9648.327245 C =10918.154055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.635 5.635 3 C 0.133 3.867 4 C -0.051 4.051 5 C 0.209 3.791 6 N -0.436 5.436 7 C 0.199 3.801 8 C -0.192 4.192 9 C -0.058 4.058 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.472 5.472 13 C 0.007 3.993 14 C 0.244 3.756 15 O -0.572 6.572 16 C -0.539 4.539 17 H 0.064 0.936 18 C 0.071 3.929 19 N -0.897 5.897 20 Si 0.902 3.098 21 H -0.285 1.285 22 H -0.276 1.276 23 H -0.275 1.275 24 C -0.008 4.008 25 C -0.064 4.064 26 C -0.194 4.194 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.387 0.613 41 H 0.270 0.730 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.118 0.882 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.495 10.485 9.189 20.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.348 5.348 3 C 0.008 3.992 4 C -0.093 4.093 5 C -0.109 4.109 6 N -0.113 5.113 7 C 0.100 3.900 8 C -0.214 4.214 9 C -0.078 4.078 10 C -0.109 4.109 11 C -0.069 4.069 12 N -0.195 5.195 13 C -0.121 4.121 14 C 0.203 3.797 15 O -0.383 6.383 16 C -0.577 4.577 17 H 0.082 0.918 18 C -0.131 4.131 19 N -0.537 5.537 20 Si 0.729 3.271 21 H -0.211 1.211 22 H -0.201 1.201 23 H -0.200 1.200 24 C -0.137 4.137 25 C -0.083 4.083 26 C -0.216 4.216 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.241 0.759 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.136 0.864 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.783 12.086 9.016 21.116 hybrid contribution 1.941 -0.468 0.236 2.010 sum -12.842 11.618 9.252 19.634 Atomic orbital electron populations 1.21620 0.79523 1.02657 1.01085 1.46198 1.04619 1.02296 1.81719 1.21185 0.98565 0.85925 0.93571 1.19878 1.00220 0.87888 1.01337 1.29066 0.93714 0.94573 0.93561 1.81264 1.09713 1.12221 1.08120 1.17711 0.91069 0.85257 0.95945 1.20585 0.99186 0.91039 1.10620 1.20746 0.93543 0.97091 0.96375 1.19602 0.93567 0.94592 1.03103 1.21549 0.98276 0.93844 0.93268 1.68611 1.30529 1.04913 1.15440 1.24127 0.97434 0.91790 0.98790 1.19744 0.89856 0.89158 0.80970 1.86043 1.49843 1.85461 1.16921 1.21622 0.93416 1.27445 1.15207 0.91800 1.25050 0.99471 0.93955 0.94596 1.69424 1.34448 1.32156 1.17673 0.86502 0.83325 0.79369 0.77919 1.21056 1.20106 1.19993 1.24743 0.87879 1.02012 0.99097 1.20832 0.99532 0.91474 0.96484 1.20588 0.91937 0.98331 1.10711 0.93532 0.91712 0.91083 0.90086 0.89690 0.86681 0.87235 0.86363 0.86339 0.91394 0.93795 0.90757 0.91853 0.75889 0.91928 0.92424 0.91118 0.86404 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 10.19 59.85 0.61 1.14 16 2 N -0.64 -4.98 3.01 -179.62 -0.54 -5.52 16 3 C 0.13 0.81 5.11 -4.05 -0.02 0.79 16 4 C -0.05 -0.30 6.03 -29.52 -0.18 -0.47 16 5 C 0.21 1.83 15.43 -20.76 -0.32 1.51 16 6 N -0.44 -5.27 18.54 42.16 0.78 -4.49 16 7 C 0.20 2.20 6.55 -83.79 -0.55 1.65 16 8 C -0.19 -2.24 9.21 -39.38 -0.36 -2.60 16 9 C -0.06 -0.80 9.69 -39.62 -0.38 -1.18 16 10 C -0.11 -1.63 5.44 -104.59 -0.57 -2.20 16 11 C 0.06 0.99 4.92 -4.97 -0.02 0.97 16 12 N -0.47 -9.73 6.14 -239.46 -1.47 -11.20 16 13 C 0.01 0.16 7.34 -2.76 -0.02 0.13 16 14 C 0.24 6.14 1.40 -90.83 -0.13 6.01 16 15 O -0.57 -15.47 13.48 -35.23 -0.48 -15.94 16 16 C -0.54 -14.29 8.61 -34.44 -0.30 -14.58 16 17 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 18 C 0.07 1.88 5.40 -17.82 -0.10 1.78 16 19 N -0.90 -23.98 11.20 55.43 0.62 -23.36 16 20 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 21 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 C -0.01 -0.19 7.36 -2.63 -0.02 -0.21 16 25 C -0.06 -0.92 9.69 -39.61 -0.38 -1.31 16 26 C -0.19 -2.34 9.21 -39.38 -0.36 -2.71 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.24 8.07 -51.93 -0.42 -0.18 16 29 H 0.07 0.41 6.20 -51.93 -0.32 0.09 16 30 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 31 H 0.08 0.56 6.20 -51.93 -0.32 0.24 16 32 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.12 1.12 6.14 -52.49 -0.32 0.79 16 35 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.07 1.04 8.02 -51.93 -0.42 0.63 16 37 H 0.04 0.74 7.33 -51.93 -0.38 0.36 16 38 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 39 H 0.06 1.28 7.87 -51.93 -0.41 0.87 16 40 H 0.39 10.63 6.60 45.56 0.30 10.93 16 41 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.06 1.30 7.44 -51.93 -0.39 0.92 16 43 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 44 H 0.12 1.71 8.06 -52.48 -0.42 1.28 16 45 H 0.12 1.20 6.14 -52.48 -0.32 0.88 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -30.60 375.84 -9.47 -40.07 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -5.92 Total: 10.76 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -3.10 Total: -11.29 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -0.61 Total: -44.58 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.48 Total: -15.94 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.60 -9.47 -40.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191917179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.295 kcal (2) G-P(sol) polarization free energy of solvation -30.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds