Wall clock time and date at job start Tue Mar 31 2020 10:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47072 * 2 1 4 4 C 1.46895 * 111.00052 * 297.33398 * 3 2 1 5 5 C 1.53006 * 109.46767 * 288.29204 * 4 3 2 6 6 C 1.53003 * 109.46854 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.46862 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99624 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99905 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00130 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00044 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47033 * 89.99233 * 11 9 7 13 13 H 1.48495 * 109.47037 * 209.99897 * 11 9 7 14 14 H 1.48504 * 109.46736 * 329.99561 * 11 9 7 15 15 C 1.46900 * 110.99780 * 61.28366 * 3 2 1 16 16 C 1.50706 * 109.47224 * 66.04830 * 15 3 2 17 17 N 1.30414 * 118.28055 * 275.01869 * 16 15 3 18 18 C 1.34670 * 121.75015 * 180.02562 * 17 16 15 19 19 O 1.21894 * 120.97123 * 179.97438 * 18 17 16 20 20 C 1.47386 * 118.06569 * 359.96044 * 18 17 16 21 21 C 1.39287 * 122.08589 * 179.74367 * 20 18 17 22 22 C 1.37790 * 119.45211 * 179.76112 * 21 20 18 23 23 C 1.38797 * 120.47607 * 0.54461 * 22 21 20 24 24 C 1.37884 * 120.70539 * 359.69639 * 23 22 21 25 25 C 1.38839 * 119.67391 * 0.02780 * 24 23 22 26 26 N 1.34436 * 118.28914 * 94.99504 * 16 15 3 27 27 H 0.97004 * 119.75286 * 0.02585 * 26 16 15 28 28 H 1.09004 * 109.46919 * 181.77524 * 1 2 3 29 29 H 1.09002 * 109.46943 * 301.76964 * 1 2 3 30 30 H 1.08992 * 109.47468 * 61.76615 * 1 2 3 31 31 H 1.09002 * 109.46780 * 240.00050 * 2 1 3 32 32 H 1.09006 * 109.46713 * 120.00015 * 2 1 3 33 33 H 1.08996 * 109.47579 * 48.29188 * 4 3 2 34 34 H 1.09000 * 109.46893 * 168.29395 * 4 3 2 35 35 H 1.09005 * 109.46941 * 300.01891 * 5 4 3 36 36 H 1.08999 * 109.47121 * 60.01652 * 5 4 3 37 37 H 1.08993 * 109.46968 * 299.99382 * 6 5 4 38 38 H 1.09000 * 109.47070 * 60.00005 * 6 5 4 39 39 H 0.96998 * 119.99819 * 180.02562 * 10 9 7 40 40 H 1.08998 * 109.47423 * 306.04646 * 15 3 2 41 41 H 1.08998 * 109.47032 * 186.04338 * 15 3 2 42 42 H 1.07997 * 120.26882 * 0.27587 * 21 20 18 43 43 H 1.08000 * 119.76416 * 180.24403 * 22 21 20 44 44 H 1.08004 * 119.64192 * 179.72418 * 23 22 21 45 45 H 1.07999 * 120.16739 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6015 2.0912 -1.2183 5 6 2.3923 1.5571 -2.4142 6 6 1.9572 2.2931 -3.6831 7 6 2.7366 1.7675 -4.8610 8 1 3.4693 0.9869 -4.7186 9 6 2.5150 2.2839 -6.1200 10 7 1.6231 3.2348 -6.2931 11 14 3.4806 1.6319 -7.5802 12 1 2.7480 0.4928 -8.1892 13 1 3.6438 2.7109 -8.5872 14 1 4.8176 1.1736 -7.1245 15 6 1.5739 2.1009 1.2028 16 6 2.2220 1.4916 2.4193 17 7 1.6562 0.4509 2.9649 18 6 2.1750 -0.1485 4.0536 19 8 1.6340 -1.1203 4.5523 20 6 3.4161 0.4046 4.6244 21 6 4.0217 -0.1458 5.7515 22 6 5.1844 0.4121 6.2366 23 6 5.7452 1.5205 5.6172 24 6 5.1540 2.0790 4.5038 25 6 3.9851 1.5277 3.9966 26 7 3.3533 2.0488 2.8850 27 1 3.7283 2.8231 2.4370 28 1 -0.3633 -1.0272 0.0318 29 1 -0.3633 0.5411 0.8737 30 1 -0.3634 0.4861 -0.9053 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.5367 1.9288 -1.3850 34 1 1.7927 3.1582 -1.1034 35 1 3.4572 1.7193 -2.2473 36 1 2.2009 0.4902 -2.5292 37 1 0.8924 2.1310 -3.8500 38 1 2.1487 3.3600 -3.5680 39 1 1.4670 3.5978 -7.1790 40 1 0.4903 2.0234 1.2911 41 1 1.8581 3.1505 1.1271 42 1 3.5879 -1.0079 6.2362 43 1 5.6603 -0.0131 7.1078 44 1 6.6545 1.9497 6.0114 45 1 5.5980 2.9412 4.0285 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000198681163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:49 Heat of formation + Delta-G solvation = 14.506452 kcal Electronic energy + Delta-G solvation = -25551.937357 eV Core-core repulsion = 21955.250914 eV Total energy + Delta-G solvation = -3596.686444 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.76988 -38.89577 -38.21653 -37.41737 -34.02914 -33.57738 -31.82730 -31.35296 -31.15231 -29.74127 -27.75068 -25.68192 -24.42043 -23.88629 -23.00939 -22.81232 -20.84652 -19.46131 -19.23802 -18.79683 -17.89660 -16.54894 -16.31712 -16.15611 -15.67130 -15.38308 -15.15482 -14.75528 -14.46904 -14.39987 -14.14304 -13.95312 -13.63560 -13.05905 -12.73795 -12.61848 -12.55032 -12.30435 -12.17974 -11.81584 -11.67169 -11.53539 -11.36101 -11.24164 -10.88817 -10.63767 -10.57025 -10.51706 -10.23524 -9.62864 -9.52956 -9.42330 -9.30516 -9.09207 -8.51342 -8.36177 -8.26458 -6.01699 -4.03609 0.31594 0.53823 1.31061 2.29372 2.83897 3.31160 3.37503 3.40830 3.50671 3.72772 4.04607 4.13136 4.21939 4.45268 4.46069 4.56759 4.74495 4.79359 4.84307 5.17349 5.21637 5.27042 5.34600 5.36560 5.48741 5.50166 5.62311 5.67760 5.70910 5.79407 5.94654 6.05254 6.10363 6.18865 6.28983 6.35803 6.47251 6.56699 6.63260 6.69899 7.01082 7.16343 7.21675 7.56440 7.65944 7.79997 7.94520 7.98575 8.41840 9.03584 9.60681 11.09673 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020503 B = 0.002492 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.300360 B =11231.888738 C =11903.699867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.044 3.956 3 N -0.530 5.530 4 C 0.052 3.948 5 C -0.102 4.102 6 C 0.023 3.977 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.056 3.944 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.079 3.921 16 C 0.469 3.531 17 N -0.592 5.592 18 C 0.534 3.466 19 O -0.489 6.489 20 C -0.214 4.214 21 C -0.027 4.027 22 C -0.154 4.154 23 C -0.058 4.058 24 C -0.162 4.162 25 C 0.180 3.820 26 N -0.615 5.615 27 H 0.425 0.575 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.014 0.986 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.140 0.860 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.068 0.861 24.639 25.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.083 4.083 3 N -0.255 5.255 4 C -0.075 4.075 5 C -0.140 4.140 6 C -0.015 4.015 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.050 4.050 16 C 0.199 3.801 17 N -0.334 5.334 18 C 0.322 3.678 19 O -0.364 6.364 20 C -0.222 4.222 21 C -0.046 4.046 22 C -0.173 4.173 23 C -0.077 4.077 24 C -0.183 4.183 25 C 0.078 3.922 26 N -0.234 5.234 27 H 0.264 0.736 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.032 0.968 38 H 0.033 0.967 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.118 0.882 42 H 0.158 0.842 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.481 -0.161 24.723 25.324 hybrid contribution 0.600 0.413 -0.763 1.055 sum 6.082 0.253 23.960 24.721 Atomic orbital electron populations 1.22315 0.97744 1.02590 1.01800 1.22268 0.93700 0.89148 1.03201 1.62420 1.59364 1.03050 1.00647 1.22435 0.98851 0.97639 0.88553 1.21625 0.98933 0.99839 0.93598 1.19069 0.96579 0.95402 0.90456 1.21240 1.21595 1.20363 0.92470 0.92703 1.25017 0.95388 0.95071 0.98991 1.69959 1.33824 1.27144 1.22668 0.86612 0.80478 0.78543 0.82486 1.20677 1.21256 1.19877 1.21418 0.99732 0.97675 0.86212 1.22846 0.80365 0.86159 0.90706 1.69289 1.35242 1.12141 1.16744 1.19112 0.82626 0.84106 0.81987 1.90769 1.61644 1.24417 1.59614 1.21052 1.01429 0.98859 1.00867 1.21120 0.93342 0.97708 0.92480 1.21214 0.96792 0.97619 1.01700 1.21189 0.98665 0.94399 0.93468 1.20681 0.95329 1.02861 0.99434 1.18063 0.93371 0.93362 0.87398 1.42446 1.23387 1.31349 1.26259 0.73622 0.92191 0.92136 0.92214 0.89991 0.90339 0.93753 0.91144 0.92705 0.93272 0.96751 0.96654 0.93035 0.89430 0.88198 0.84171 0.84978 0.84759 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.45 9.28 37.16 0.34 -2.11 16 2 C 0.04 0.62 5.61 -3.82 -0.02 0.60 16 3 N -0.53 -6.83 4.66 -236.07 -1.10 -7.93 16 4 C 0.05 0.77 4.83 -3.82 -0.02 0.75 16 5 C -0.10 -1.97 5.20 -26.73 -0.14 -2.10 16 6 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 11 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.08 0.79 5.06 -4.97 -0.03 0.77 16 16 C 0.47 5.09 6.64 -156.03 -1.04 4.05 16 17 N -0.59 -8.39 8.73 -10.63 -0.09 -8.49 16 18 C 0.53 8.20 7.98 -12.59 -0.10 8.10 16 19 O -0.49 -8.99 17.48 5.01 0.09 -8.90 16 20 C -0.21 -2.55 5.89 -104.86 -0.62 -3.17 16 21 C -0.03 -0.27 9.68 -39.36 -0.38 -0.65 16 22 C -0.15 -1.08 10.02 -39.54 -0.40 -1.48 16 23 C -0.06 -0.35 10.01 -39.50 -0.40 -0.74 16 24 C -0.16 -1.07 9.96 -39.49 -0.39 -1.47 16 25 C 0.18 1.68 6.66 -83.91 -0.56 1.12 16 26 N -0.61 -5.09 5.32 -8.23 -0.04 -5.13 16 27 H 0.43 2.15 8.57 -40.82 -0.35 1.80 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.77 6.21 -51.93 -0.32 0.45 16 30 H 0.06 0.82 6.32 -51.93 -0.33 0.49 16 31 H 0.08 1.23 6.60 -51.93 -0.34 0.88 16 32 H 0.08 1.16 6.25 -51.93 -0.32 0.84 16 33 H 0.04 0.68 5.91 -51.93 -0.31 0.37 16 34 H 0.07 0.98 7.81 -51.93 -0.41 0.57 16 35 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.97 6.71 -51.93 -0.35 0.62 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 40 H 0.09 0.90 6.00 -51.93 -0.31 0.58 16 41 H 0.10 0.70 7.74 -51.93 -0.40 0.30 16 42 H 0.14 1.35 7.83 -52.49 -0.41 0.94 16 43 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.13 0.42 8.06 -52.48 -0.42 0.00 16 45 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -34.53 365.44 -10.57 -45.10 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -6.35 Total: -1.69 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -4.29 Total: -9.12 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.50 Total: -47.31 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.53 -10.57 -45.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198681163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.608 kcal (2) G-P(sol) polarization free energy of solvation -34.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds