Wall clock time and date at job start Tue Mar 31 2020 10:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47072 * 2 1 4 4 C 1.46895 * 111.00052 * 297.33398 * 3 2 1 5 5 C 1.53006 * 109.46767 * 288.29204 * 4 3 2 6 6 C 1.53003 * 109.46854 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.46862 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99624 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99905 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00130 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00044 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47033 * 89.99233 * 11 9 7 13 13 H 1.48495 * 109.47037 * 209.99897 * 11 9 7 14 14 H 1.48504 * 109.46736 * 329.99561 * 11 9 7 15 15 C 1.46900 * 110.99780 * 61.28366 * 3 2 1 16 16 C 1.50706 * 109.47224 * 66.04830 * 15 3 2 17 17 N 1.30414 * 118.28055 * 275.01869 * 16 15 3 18 18 C 1.34670 * 121.75015 * 180.02562 * 17 16 15 19 19 O 1.21894 * 120.97123 * 179.97438 * 18 17 16 20 20 C 1.47386 * 118.06569 * 359.96044 * 18 17 16 21 21 C 1.39287 * 122.08589 * 179.74367 * 20 18 17 22 22 C 1.37790 * 119.45211 * 179.76112 * 21 20 18 23 23 C 1.38797 * 120.47607 * 0.54461 * 22 21 20 24 24 C 1.37884 * 120.70539 * 359.69639 * 23 22 21 25 25 C 1.38839 * 119.67391 * 0.02780 * 24 23 22 26 26 N 1.34436 * 118.28914 * 94.99504 * 16 15 3 27 27 H 0.97004 * 119.75286 * 0.02585 * 26 16 15 28 28 H 1.09004 * 109.46919 * 181.77524 * 1 2 3 29 29 H 1.09002 * 109.46943 * 301.76964 * 1 2 3 30 30 H 1.08992 * 109.47468 * 61.76615 * 1 2 3 31 31 H 1.09002 * 109.46780 * 240.00050 * 2 1 3 32 32 H 1.09006 * 109.46713 * 120.00015 * 2 1 3 33 33 H 1.08996 * 109.47579 * 48.29188 * 4 3 2 34 34 H 1.09000 * 109.46893 * 168.29395 * 4 3 2 35 35 H 1.09005 * 109.46941 * 300.01891 * 5 4 3 36 36 H 1.08999 * 109.47121 * 60.01652 * 5 4 3 37 37 H 1.08993 * 109.46968 * 299.99382 * 6 5 4 38 38 H 1.09000 * 109.47070 * 60.00005 * 6 5 4 39 39 H 0.96998 * 119.99819 * 180.02562 * 10 9 7 40 40 H 1.08998 * 109.47423 * 306.04646 * 15 3 2 41 41 H 1.08998 * 109.47032 * 186.04338 * 15 3 2 42 42 H 1.07997 * 120.26882 * 0.27587 * 21 20 18 43 43 H 1.08000 * 119.76416 * 180.24403 * 22 21 20 44 44 H 1.08004 * 119.64192 * 179.72418 * 23 22 21 45 45 H 1.07999 * 120.16739 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6015 2.0912 -1.2183 5 6 2.3923 1.5571 -2.4142 6 6 1.9572 2.2931 -3.6831 7 6 2.7366 1.7675 -4.8610 8 1 3.4693 0.9869 -4.7186 9 6 2.5150 2.2839 -6.1200 10 7 1.6231 3.2348 -6.2931 11 14 3.4806 1.6319 -7.5802 12 1 2.7480 0.4928 -8.1892 13 1 3.6438 2.7109 -8.5872 14 1 4.8176 1.1736 -7.1245 15 6 1.5739 2.1009 1.2028 16 6 2.2220 1.4916 2.4193 17 7 1.6562 0.4509 2.9649 18 6 2.1750 -0.1485 4.0536 19 8 1.6340 -1.1203 4.5523 20 6 3.4161 0.4046 4.6244 21 6 4.0217 -0.1458 5.7515 22 6 5.1844 0.4121 6.2366 23 6 5.7452 1.5205 5.6172 24 6 5.1540 2.0790 4.5038 25 6 3.9851 1.5277 3.9966 26 7 3.3533 2.0488 2.8850 27 1 3.7283 2.8231 2.4370 28 1 -0.3633 -1.0272 0.0318 29 1 -0.3633 0.5411 0.8737 30 1 -0.3634 0.4861 -0.9053 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.5367 1.9288 -1.3850 34 1 1.7927 3.1582 -1.1034 35 1 3.4572 1.7193 -2.2473 36 1 2.2009 0.4902 -2.5292 37 1 0.8924 2.1310 -3.8500 38 1 2.1487 3.3600 -3.5680 39 1 1.4670 3.5978 -7.1790 40 1 0.4903 2.0234 1.2911 41 1 1.8581 3.1505 1.1271 42 1 3.5879 -1.0079 6.2362 43 1 5.6603 -0.0131 7.1078 44 1 6.6545 1.9497 6.0114 45 1 5.5980 2.9412 4.0285 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000198681163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:48 Heat of formation + Delta-G solvation = -9.223252 kcal Electronic energy + Delta-G solvation = -25552.966354 eV Core-core repulsion = 21955.250914 eV Total energy + Delta-G solvation = -3597.715441 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.57734 -39.84203 -39.18452 -38.33888 -35.74101 -34.66922 -33.45164 -32.30292 -31.90207 -30.77567 -29.08063 -27.09998 -25.30099 -25.05199 -24.23422 -23.56964 -22.32850 -20.78435 -20.00505 -19.55780 -18.66051 -18.43832 -17.43340 -17.18890 -16.80312 -16.51126 -16.15662 -16.04813 -15.47804 -15.35153 -15.12010 -14.91880 -14.58903 -14.41756 -14.33843 -13.62100 -13.55790 -13.29631 -13.19719 -13.07396 -13.00103 -12.73804 -12.58773 -12.40428 -12.36242 -12.31129 -12.11187 -11.87127 -11.32184 -11.25337 -11.13792 -11.06289 -10.50632 -10.29458 -10.17833 -9.35599 -9.25448 -8.17233 -6.26689 -0.47011 -0.16604 0.57667 1.41718 1.42224 1.53178 1.56931 2.09110 2.42829 2.61630 2.86319 3.11340 3.16435 3.34605 3.52448 3.73337 3.98393 4.04793 4.06831 4.24456 4.26316 4.32995 4.37536 4.44338 4.46603 4.53462 4.64061 4.77192 4.81024 4.89739 4.92623 5.01656 5.06725 5.12708 5.22226 5.29978 5.35251 5.39229 5.41716 5.58043 5.76905 5.80416 5.91921 5.95555 5.99324 6.04637 6.32269 6.57722 6.90738 7.01898 7.42203 8.94233 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020503 B = 0.002492 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.300360 B =11231.888738 C =11903.699867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.049 3.951 3 N -0.528 5.528 4 C 0.064 3.936 5 C -0.088 4.088 6 C 0.027 3.973 7 C -0.540 4.540 8 H 0.055 0.945 9 C 0.001 3.999 10 N -0.931 5.931 11 Si 0.958 3.042 12 H -0.276 1.276 13 H -0.281 1.281 14 H -0.264 1.264 15 C 0.080 3.920 16 C 0.473 3.527 17 N -0.627 5.627 18 C 0.519 3.481 19 O -0.550 6.550 20 C -0.243 4.243 21 C -0.051 4.051 22 C -0.143 4.143 23 C -0.048 4.048 24 C -0.150 4.150 25 C 0.167 3.833 26 N -0.593 5.593 27 H 0.443 0.557 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.040 0.960 37 H -0.010 1.010 38 H 0.000 1.000 39 H 0.263 0.737 40 H 0.088 0.912 41 H 0.141 0.859 42 H 0.127 0.873 43 H 0.160 0.840 44 H 0.176 0.824 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.978 2.808 25.387 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.079 4.079 3 N -0.252 5.252 4 C -0.063 4.063 5 C -0.126 4.126 6 C -0.011 4.011 7 C -0.578 4.578 8 H 0.073 0.927 9 C -0.196 4.196 10 N -0.572 5.572 11 Si 0.783 3.217 12 H -0.202 1.202 13 H -0.207 1.207 14 H -0.189 1.189 15 C -0.049 4.049 16 C 0.204 3.796 17 N -0.372 5.372 18 C 0.309 3.691 19 O -0.430 6.430 20 C -0.251 4.251 21 C -0.070 4.070 22 C -0.162 4.162 23 C -0.067 4.067 24 C -0.170 4.170 25 C 0.065 3.935 26 N -0.213 5.213 27 H 0.286 0.714 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.008 0.992 38 H 0.018 0.982 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.158 0.842 42 H 0.145 0.855 43 H 0.177 0.823 44 H 0.193 0.807 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 8.440 1.842 25.464 26.889 hybrid contribution -0.201 -0.116 -0.927 0.956 sum 8.239 1.726 24.537 25.940 Atomic orbital electron populations 1.22236 0.97279 1.02529 1.01675 1.22138 0.94009 0.89798 1.01934 1.62257 1.59414 1.02499 1.01037 1.22159 0.97765 0.98518 0.87810 1.21355 0.99354 0.98718 0.93157 1.18960 0.94778 0.94932 0.92395 1.21703 1.21871 1.20401 0.93871 0.92660 1.25896 0.96388 0.95296 1.02050 1.70075 1.35265 1.28365 1.23484 0.85548 0.79299 0.78004 0.78818 1.20158 1.20671 1.18867 1.21568 0.99848 0.99183 0.84269 1.22852 0.80846 0.85380 0.90531 1.69156 1.36855 1.13804 1.17386 1.19604 0.83652 0.83650 0.82149 1.90703 1.63696 1.27056 1.61505 1.20943 1.00957 1.00758 1.02462 1.21188 0.94950 0.98210 0.92699 1.21578 0.95181 0.97454 1.02010 1.21730 0.99336 0.93160 0.92459 1.21163 0.93589 1.03176 0.99100 1.18257 0.94445 0.93075 0.87697 1.42378 1.22153 1.31144 1.25647 0.71403 0.92401 0.91620 0.92712 0.91451 0.91302 0.94089 0.89148 0.92720 0.94105 0.99168 0.98202 0.92848 0.89421 0.84156 0.85546 0.82278 0.80700 0.80740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.78 9.28 71.98 0.67 -4.12 16 2 C 0.05 1.38 5.61 86.30 0.48 1.86 16 3 N -0.53 -12.88 4.66 -900.78 -4.20 -17.08 16 4 C 0.06 1.84 4.83 86.31 0.42 2.26 16 5 C -0.09 -3.36 5.20 30.60 0.16 -3.20 16 6 C 0.03 1.35 4.97 29.85 0.15 1.50 16 7 C -0.54 -30.16 9.11 25.60 0.23 -29.92 16 8 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 9 C 0.00 0.08 5.46 84.65 0.46 0.54 16 10 N -0.93 -55.50 13.29 21.45 0.28 -55.22 16 11 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 14 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 15 C 0.08 1.44 5.06 85.56 0.43 1.87 16 16 C 0.47 9.79 6.64 138.35 0.92 10.70 16 17 N -0.63 -18.47 8.73 -305.75 -2.67 -21.14 16 18 C 0.52 17.10 7.98 86.67 0.69 17.79 16 19 O -0.55 -22.32 17.48 -4.97 -0.09 -22.41 16 20 C -0.24 -5.91 5.89 -20.02 -0.12 -6.03 16 21 C -0.05 -1.02 9.68 22.42 0.22 -0.81 16 22 C -0.14 -1.63 10.02 22.30 0.22 -1.41 16 23 C -0.05 -0.35 10.01 22.32 0.22 -0.12 16 24 C -0.15 -1.32 9.96 22.33 0.22 -1.10 16 25 C 0.17 2.76 6.66 38.90 0.26 3.02 16 26 N -0.59 -8.38 5.32 -179.96 -0.96 -9.34 16 27 H 0.44 2.72 8.57 -92.71 -0.79 1.92 16 28 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.06 1.68 6.21 -2.39 -0.01 1.67 16 30 H 0.05 1.51 6.32 -2.39 -0.02 1.49 16 31 H 0.07 2.06 6.60 -2.39 -0.02 2.05 16 32 H 0.07 2.11 6.25 -2.38 -0.01 2.09 16 33 H 0.04 1.22 5.91 -2.39 -0.01 1.21 16 34 H 0.09 2.26 7.81 -2.39 -0.02 2.24 16 35 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.04 1.61 6.71 -2.39 -0.02 1.59 16 37 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 38 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 40 H 0.09 1.66 6.00 -2.39 -0.01 1.64 16 41 H 0.14 1.39 7.74 -2.39 -0.02 1.38 16 42 H 0.13 2.74 7.83 -2.91 -0.02 2.72 16 43 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 44 H 0.18 -0.06 8.06 -2.91 -0.02 -0.08 16 45 H 0.18 0.27 8.06 -2.91 -0.02 0.24 16 Total: -1.00 -80.10 365.44 0.26 -79.84 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 0.22 Total: 6.68 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 5.64 Total: -7.15 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -7.54 Total: -102.77 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.09 Total: -22.41 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -80.10 0.26 -79.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198681163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.614 kcal (2) G-P(sol) polarization free energy of solvation -80.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds