Wall clock time and date at job start Tue Mar 31 2020 11:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34944 * 126.03465 * 2 1 4 4 C 1.35319 * 107.74156 * 180.02562 * 3 2 1 5 5 C 1.50706 * 126.03704 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.46958 * 90.00516 * 5 4 3 7 7 C 1.46896 * 111.00195 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47382 * 179.97438 * 7 6 5 9 9 C 1.38280 * 119.97205 * 270.02476 * 8 7 6 10 10 C 1.38250 * 120.10833 * 180.02562 * 9 8 7 11 11 C 1.38159 * 120.05742 * 359.68104 * 10 9 8 12 12 C 1.38710 * 119.94311 * 0.57011 * 11 10 9 13 13 O 1.35900 * 120.05544 * 179.72143 * 12 11 10 14 14 C 1.42898 * 117.00172 * 359.72769 * 13 12 11 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46616 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47104 * 119.99966 * 20 18 16 23 23 H 1.48489 * 109.47200 * 240.00246 * 20 18 16 24 24 C 1.38129 * 119.97079 * 90.00085 * 8 7 6 25 25 C 1.39862 * 107.92322 * 0.26824 * 4 3 2 26 26 N 1.30841 * 108.20141 * 359.54993 * 25 4 3 27 27 H 1.09001 * 109.47459 * 89.99817 * 1 2 3 28 28 H 1.09006 * 109.47126 * 210.00064 * 1 2 3 29 29 H 1.09000 * 109.47102 * 329.99647 * 1 2 3 30 30 H 1.07998 * 126.13173 * 0.02562 * 3 2 1 31 31 H 1.08996 * 109.47105 * 330.00223 * 5 4 3 32 32 H 1.09006 * 109.46860 * 210.00418 * 5 4 3 33 33 H 1.00903 * 110.99490 * 56.04413 * 6 5 4 34 34 H 1.09005 * 109.46944 * 59.99947 * 7 6 5 35 35 H 1.09002 * 109.47398 * 300.00389 * 7 6 5 36 36 H 1.08000 * 119.95034 * 0.02562 * 9 8 7 37 37 H 1.08006 * 119.97154 * 179.97438 * 10 9 8 38 38 H 1.08006 * 120.03137 * 180.29323 * 11 10 9 39 39 H 1.09002 * 109.47259 * 300.00149 * 14 13 12 40 40 H 1.09001 * 109.47074 * 60.00171 * 14 13 12 41 41 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 42 42 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 43 43 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 44 44 H 1.07998 * 120.02418 * 0.02613 * 24 8 7 45 45 H 1.08001 * 125.90133 * 179.73495 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5453 -0.0013 6 7 5.1665 1.8309 1.3834 7 6 6.3598 2.6867 1.4220 8 6 6.7374 2.9580 2.8554 9 6 6.2120 4.0556 3.5123 10 6 6.5568 4.3075 4.8272 11 6 7.4224 3.4591 5.4902 12 6 7.9549 2.3604 4.8319 13 8 8.8111 1.5276 5.4803 14 6 9.1239 1.8470 6.8375 15 6 10.0940 0.8042 7.3963 16 6 10.4234 1.1407 8.8278 17 1 9.9844 2.0111 9.2927 18 6 11.2845 0.3369 9.5444 19 7 11.8187 -0.7232 8.9784 20 14 11.6934 0.7544 11.3187 21 1 10.9685 1.9879 11.7165 22 1 11.2801 -0.3678 12.1991 23 1 13.1559 0.9747 11.4509 24 6 7.6076 2.1099 3.5122 25 6 3.5346 -0.7321 -0.0072 26 7 2.2891 -1.1328 -0.0007 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.9281 2.1193 0.0004 31 1 4.5439 2.4801 -0.5151 32 1 5.5818 1.0340 -0.5156 33 1 5.3173 0.9772 1.8996 34 1 6.1472 3.6295 0.9179 35 1 7.1846 2.1831 0.9177 36 1 5.5311 4.7172 2.9974 37 1 6.1454 5.1656 5.3380 38 1 7.6879 3.6537 6.5189 39 1 9.5853 2.8335 6.8815 40 1 8.2095 1.8468 7.4308 41 1 9.6321 -0.1821 7.3523 42 1 11.0084 0.8039 6.8031 43 1 12.4242 -1.2890 9.4827 44 1 8.0176 1.2529 2.9987 45 1 4.4054 -1.3710 -0.0133 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237789580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:42 Heat of formation + Delta-G solvation = 57.405210 kcal Electronic energy + Delta-G solvation = -24070.039854 eV Core-core repulsion = 20475.213641 eV Total energy + Delta-G solvation = -3594.826214 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.44311 -39.77981 -37.63079 -36.00948 -33.58371 -33.35571 -31.85014 -30.81233 -30.06672 -29.11257 -27.70031 -25.77363 -24.90454 -23.66279 -22.23000 -21.65639 -21.36815 -20.54697 -20.08276 -17.71787 -17.04939 -16.26499 -15.99429 -15.81616 -15.58837 -15.31266 -15.18856 -14.86195 -14.77874 -14.47382 -14.33075 -13.60208 -13.48069 -13.06370 -13.03994 -12.75514 -12.63570 -12.47918 -12.33310 -12.26466 -11.92732 -11.36404 -11.30455 -11.23256 -10.89020 -10.79462 -10.68079 -10.43438 -9.84515 -9.69743 -9.65097 -9.28047 -8.95176 -8.61123 -8.47411 -8.44685 -7.80297 -6.10215 -4.14709 1.45335 1.62846 1.73445 2.23274 2.50285 3.26739 3.33768 3.37445 3.82689 3.92110 4.18692 4.39675 4.43831 4.55493 4.73939 4.76667 4.84025 4.94854 5.00589 5.05209 5.12467 5.25276 5.26288 5.34406 5.43392 5.49588 5.52246 5.54096 5.69554 5.85600 5.88937 6.04903 6.08519 6.21596 6.34942 6.58023 6.58628 6.69622 6.73734 6.75466 6.83432 7.02951 7.21943 7.41714 7.51752 7.64654 7.82324 8.08044 8.24437 8.91125 9.49627 11.01400 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.001940 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.755879 B =14433.050653 C =15177.260540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.379 5.379 3 C 0.075 3.925 4 C -0.237 4.237 5 C 0.138 3.862 6 N -0.682 5.682 7 C 0.101 3.899 8 C -0.050 4.050 9 C -0.149 4.149 10 C -0.082 4.082 11 C -0.211 4.211 12 C 0.145 3.855 13 O -0.317 6.317 14 C 0.066 3.934 15 C 0.025 3.975 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.889 5.889 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.156 4.156 25 C 0.055 3.945 26 N -0.300 5.300 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.174 0.826 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.346 0.654 34 H 0.080 0.920 35 H 0.040 0.960 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.129 0.871 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.263 0.737 44 H 0.124 0.876 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.216 7.478 -20.799 29.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.161 5.161 3 C -0.072 4.072 4 C -0.249 4.249 5 C 0.008 3.992 6 N -0.314 5.314 7 C -0.027 4.027 8 C -0.051 4.051 9 C -0.168 4.168 10 C -0.100 4.100 11 C -0.230 4.230 12 C 0.098 3.902 13 O -0.230 6.230 14 C -0.008 4.008 15 C -0.013 4.013 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.527 5.527 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.175 4.175 25 C -0.132 4.132 26 N -0.121 5.121 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.191 0.809 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.165 0.835 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.147 0.853 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.072 0.928 44 H 0.142 0.858 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -21.391 6.661 -20.764 30.546 hybrid contribution 1.394 0.403 1.037 1.783 sum -19.997 7.063 -19.727 28.964 Atomic orbital electron populations 1.21852 0.74263 1.04606 1.03249 1.48483 1.06662 1.03955 1.57010 1.22328 0.90796 0.93274 1.00777 1.19941 0.94459 0.93578 1.16894 1.20112 0.92436 0.97127 0.89511 1.60596 1.35459 1.22149 1.13152 1.20842 0.91093 0.98036 0.92724 1.19394 0.95838 0.94738 0.95115 1.20748 1.02260 0.98797 0.94999 1.20892 0.96374 0.98300 0.94475 1.21389 1.02903 0.97303 1.01414 1.19148 0.89629 0.89488 0.91970 1.86167 1.58860 1.49117 1.28831 1.23318 0.99425 1.01083 0.77022 1.19130 0.93424 0.93435 0.95263 1.21013 1.27863 1.11244 0.96277 0.92308 1.24998 0.95717 0.94880 0.98654 1.69990 1.30818 1.15018 1.36916 0.86428 0.78208 0.78423 0.84314 1.19641 1.20844 1.20834 1.20281 1.02444 1.01918 0.92894 1.23837 0.95257 0.94651 0.99449 1.77377 1.01730 1.08280 1.24686 0.90836 0.89294 0.89425 0.80932 0.90596 0.94388 0.83548 0.90160 0.94196 0.86409 0.86248 0.85337 0.93157 0.93160 0.95397 0.95397 0.92767 0.85769 0.80180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.47 11.47 59.85 0.69 1.16 16 2 N -0.38 -3.34 4.01 -68.16 -0.27 -3.61 16 3 C 0.08 0.61 11.40 -17.22 -0.20 0.41 16 4 C -0.24 -2.11 5.61 -105.05 -0.59 -2.70 16 5 C 0.14 1.08 6.17 -4.97 -0.03 1.05 16 6 N -0.68 -6.51 6.48 -116.34 -0.75 -7.26 16 7 C 0.10 0.98 5.81 -4.98 -0.03 0.95 16 8 C -0.05 -0.63 5.39 -104.65 -0.56 -1.20 16 9 C -0.15 -1.84 9.70 -39.56 -0.38 -2.23 16 10 C -0.08 -1.09 10.04 -39.61 -0.40 -1.49 16 11 C -0.21 -3.36 9.04 -39.44 -0.36 -3.71 16 12 C 0.14 2.55 6.69 -39.22 -0.26 2.29 16 13 O -0.32 -6.60 10.14 -19.43 -0.20 -6.80 16 14 C 0.07 1.42 4.68 37.16 0.17 1.60 16 15 C 0.02 0.65 5.34 -27.89 -0.15 0.50 16 16 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 20 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C -0.16 -2.35 9.64 -39.43 -0.38 -2.73 16 25 C 0.05 0.54 11.96 -17.37 -0.21 0.33 16 26 N -0.30 -3.38 12.58 30.62 0.39 -2.99 16 27 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.17 0.90 8.06 -52.49 -0.42 0.47 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.35 3.62 8.71 -39.29 -0.34 3.27 16 34 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 35 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 36 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 38 H 0.13 2.02 6.30 -52.48 -0.33 1.69 16 39 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 40 H 0.05 1.04 7.65 -51.93 -0.40 0.65 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 45 H 0.18 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 384.70 15.07 5.80 5.80 Total: -1.00 -33.31 384.70 -9.35 -42.66 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.92 Total: 0.95 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -3.10 Total: -19.23 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.09 Total: -39.71 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.20 Total: -6.80 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.31 -9.35 -42.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237789580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.061 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds