Wall clock time and date at job start Tue Mar 31 2020 11:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34944 * 126.03465 * 2 1 4 4 C 1.35319 * 107.74156 * 180.02562 * 3 2 1 5 5 C 1.50706 * 126.03704 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.46958 * 90.00516 * 5 4 3 7 7 C 1.46896 * 111.00195 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47382 * 179.97438 * 7 6 5 9 9 C 1.38280 * 119.97205 * 270.02476 * 8 7 6 10 10 C 1.38250 * 120.10833 * 180.02562 * 9 8 7 11 11 C 1.38159 * 120.05742 * 359.68104 * 10 9 8 12 12 C 1.38710 * 119.94311 * 0.57011 * 11 10 9 13 13 O 1.35900 * 120.05544 * 179.72143 * 12 11 10 14 14 C 1.42898 * 117.00172 * 359.72769 * 13 12 11 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46616 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47104 * 119.99966 * 20 18 16 23 23 H 1.48489 * 109.47200 * 240.00246 * 20 18 16 24 24 C 1.38129 * 119.97079 * 90.00085 * 8 7 6 25 25 C 1.39862 * 107.92322 * 0.26824 * 4 3 2 26 26 N 1.30841 * 108.20141 * 359.54993 * 25 4 3 27 27 H 1.09001 * 109.47459 * 89.99817 * 1 2 3 28 28 H 1.09006 * 109.47126 * 210.00064 * 1 2 3 29 29 H 1.09000 * 109.47102 * 329.99647 * 1 2 3 30 30 H 1.07998 * 126.13173 * 0.02562 * 3 2 1 31 31 H 1.08996 * 109.47105 * 330.00223 * 5 4 3 32 32 H 1.09006 * 109.46860 * 210.00418 * 5 4 3 33 33 H 1.00903 * 110.99490 * 56.04413 * 6 5 4 34 34 H 1.09005 * 109.46944 * 59.99947 * 7 6 5 35 35 H 1.09002 * 109.47398 * 300.00389 * 7 6 5 36 36 H 1.08000 * 119.95034 * 0.02562 * 9 8 7 37 37 H 1.08006 * 119.97154 * 179.97438 * 10 9 8 38 38 H 1.08006 * 120.03137 * 180.29323 * 11 10 9 39 39 H 1.09002 * 109.47259 * 300.00149 * 14 13 12 40 40 H 1.09001 * 109.47074 * 60.00171 * 14 13 12 41 41 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 42 42 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 43 43 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 44 44 H 1.07998 * 120.02418 * 0.02613 * 24 8 7 45 45 H 1.08001 * 125.90133 * 179.73495 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5453 -0.0013 6 7 5.1665 1.8309 1.3834 7 6 6.3598 2.6867 1.4220 8 6 6.7374 2.9580 2.8554 9 6 6.2120 4.0556 3.5123 10 6 6.5568 4.3075 4.8272 11 6 7.4224 3.4591 5.4902 12 6 7.9549 2.3604 4.8319 13 8 8.8111 1.5276 5.4803 14 6 9.1239 1.8470 6.8375 15 6 10.0940 0.8042 7.3963 16 6 10.4234 1.1407 8.8278 17 1 9.9844 2.0111 9.2927 18 6 11.2845 0.3369 9.5444 19 7 11.8187 -0.7232 8.9784 20 14 11.6934 0.7544 11.3187 21 1 10.9685 1.9879 11.7165 22 1 11.2801 -0.3678 12.1991 23 1 13.1559 0.9747 11.4509 24 6 7.6076 2.1099 3.5122 25 6 3.5346 -0.7321 -0.0072 26 7 2.2891 -1.1328 -0.0007 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.9281 2.1193 0.0004 31 1 4.5439 2.4801 -0.5151 32 1 5.5818 1.0340 -0.5156 33 1 5.3173 0.9772 1.8996 34 1 6.1472 3.6295 0.9179 35 1 7.1846 2.1831 0.9177 36 1 5.5311 4.7172 2.9974 37 1 6.1454 5.1656 5.3380 38 1 7.6879 3.6537 6.5189 39 1 9.5853 2.8335 6.8815 40 1 8.2095 1.8468 7.4308 41 1 9.6321 -0.1821 7.3523 42 1 11.0084 0.8039 6.8031 43 1 12.4242 -1.2890 9.4827 44 1 8.0176 1.2529 2.9987 45 1 4.4054 -1.3710 -0.0133 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237789580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:41 Heat of formation + Delta-G solvation = 36.363538 kcal Electronic energy + Delta-G solvation = -24070.952290 eV Core-core repulsion = 20475.213641 eV Total energy + Delta-G solvation = -3595.738649 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.06657 -41.04509 -38.86442 -36.85737 -35.47008 -34.16131 -32.70703 -32.56173 -30.99501 -30.44915 -28.29088 -27.08813 -26.30384 -24.46967 -23.37772 -23.28997 -21.99119 -21.54937 -21.08105 -19.14069 -18.19378 -17.63838 -17.06020 -16.93644 -16.83339 -16.54238 -16.38735 -16.04113 -15.53821 -15.51515 -15.19111 -14.44214 -14.35485 -14.34084 -14.25891 -13.93844 -13.77935 -13.47422 -13.20611 -13.06665 -13.00944 -12.88609 -12.63752 -12.56165 -12.50897 -12.28638 -11.82332 -11.59103 -11.55397 -11.44780 -11.36291 -10.63788 -10.34456 -9.87998 -9.40956 -9.16868 -9.05488 -8.27720 -6.41472 0.37494 0.58119 1.00557 1.40351 1.41456 1.54992 1.73227 1.82884 2.27560 2.52067 2.83504 3.06658 3.62402 3.70500 3.89630 3.94532 4.06327 4.18437 4.24891 4.26098 4.32633 4.35592 4.45415 4.47502 4.49323 4.57009 4.61575 4.70821 4.72500 4.77267 4.84815 4.87304 4.94369 5.16231 5.27359 5.31304 5.45621 5.46439 5.56300 5.66955 5.70049 5.70998 5.93834 6.07092 6.14843 6.20467 6.43026 6.59201 6.73506 6.76501 7.28707 8.85646 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.001940 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.755879 B =14433.050653 C =15177.260540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.384 5.384 3 C 0.078 3.922 4 C -0.252 4.252 5 C 0.144 3.856 6 N -0.686 5.686 7 C 0.106 3.894 8 C -0.044 4.044 9 C -0.139 4.139 10 C -0.081 4.081 11 C -0.225 4.225 12 C 0.104 3.896 13 O -0.343 6.343 14 C 0.086 3.914 15 C 0.028 3.972 16 C -0.546 4.546 17 H 0.071 0.929 18 C 0.000 4.000 19 N -0.931 5.931 20 Si 0.977 3.023 21 H -0.257 1.257 22 H -0.277 1.277 23 H -0.276 1.276 24 C -0.165 4.165 25 C 0.041 3.959 26 N -0.343 5.343 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.204 0.796 31 H 0.093 0.907 32 H 0.041 0.959 33 H 0.337 0.663 34 H 0.103 0.897 35 H 0.043 0.957 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.124 0.876 39 H 0.059 0.941 40 H 0.058 0.942 41 H -0.002 1.002 42 H -0.001 1.001 43 H 0.267 0.733 44 H 0.123 0.877 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.109 10.316 -21.177 32.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.166 5.166 3 C -0.070 4.070 4 C -0.263 4.263 5 C 0.015 3.985 6 N -0.317 5.317 7 C -0.022 4.022 8 C -0.044 4.044 9 C -0.157 4.157 10 C -0.098 4.098 11 C -0.244 4.244 12 C 0.059 3.941 13 O -0.258 6.258 14 C 0.011 3.989 15 C -0.010 4.010 16 C -0.583 4.583 17 H 0.089 0.911 18 C -0.198 4.198 19 N -0.570 5.570 20 Si 0.801 3.199 21 H -0.181 1.181 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.185 4.185 25 C -0.145 4.145 26 N -0.166 5.166 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.132 0.868 30 H 0.221 0.779 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.155 0.845 34 H 0.121 0.879 35 H 0.061 0.939 36 H 0.169 0.831 37 H 0.167 0.833 38 H 0.142 0.858 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.016 0.984 42 H 0.017 0.983 43 H 0.076 0.924 44 H 0.141 0.859 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -23.313 9.511 -21.169 32.895 hybrid contribution 1.853 -0.451 0.993 2.150 sum -21.459 9.061 -20.176 30.817 Atomic orbital electron populations 1.22166 0.72296 1.05721 1.04547 1.48830 1.07913 1.03558 1.56298 1.22863 0.90516 0.94338 0.99246 1.20130 0.95369 0.93197 1.17639 1.20116 0.92085 0.97734 0.88583 1.60637 1.35116 1.21776 1.14152 1.20866 0.91421 0.99202 0.90742 1.19734 0.94317 0.93944 0.96435 1.21189 1.01453 0.98499 0.94601 1.21252 0.95206 0.98402 0.94991 1.21492 1.03882 0.97507 1.01503 1.19509 0.90934 0.90585 0.93088 1.86074 1.60717 1.50818 1.28158 1.22830 0.98495 0.99435 0.78098 1.18973 0.93173 0.93564 0.95260 1.21428 1.28162 1.11757 0.97000 0.91124 1.26063 0.95357 0.94527 1.03863 1.70132 1.31529 1.16240 1.39106 0.85215 0.78164 0.78693 0.77854 1.18113 1.20243 1.20153 1.20466 1.03191 1.02644 0.92161 1.24128 0.95319 0.95696 0.99355 1.77300 1.02653 1.10173 1.26429 0.89437 0.89730 0.86797 0.77878 0.88922 0.94104 0.84540 0.87913 0.93853 0.83133 0.83292 0.85803 0.92256 0.92419 0.98407 0.98288 0.92434 0.85946 0.79434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 11.47 127.77 1.47 2.17 16 2 N -0.38 -6.28 4.01 -369.56 -1.48 -7.76 16 3 C 0.08 1.09 11.40 83.54 0.95 2.04 16 4 C -0.25 -4.10 5.61 -20.14 -0.11 -4.21 16 5 C 0.14 1.92 6.17 85.56 0.53 2.45 16 6 N -0.69 -11.52 6.48 -521.98 -3.38 -14.90 16 7 C 0.11 1.75 5.81 85.56 0.50 2.24 16 8 C -0.04 -1.01 5.39 -19.88 -0.11 -1.11 16 9 C -0.14 -2.95 9.70 22.28 0.22 -2.73 16 10 C -0.08 -1.93 10.04 22.25 0.22 -1.71 16 11 C -0.22 -7.03 9.04 22.36 0.20 -6.83 16 12 C 0.10 3.74 6.69 22.50 0.15 3.89 16 13 O -0.34 -15.05 10.14 -92.43 -0.94 -15.99 16 14 C 0.09 3.88 4.68 71.98 0.34 4.21 16 15 C 0.03 1.54 5.34 29.85 0.16 1.70 16 16 C -0.55 -31.28 9.11 25.60 0.23 -31.05 16 17 H 0.07 3.79 7.74 -2.91 -0.02 3.76 16 18 C 0.00 0.02 5.46 84.65 0.46 0.48 16 19 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 20 Si 0.98 43.94 29.54 68.60 2.03 45.96 16 21 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 24 C -0.17 -4.97 9.64 22.37 0.22 -4.76 16 25 C 0.04 0.80 11.96 85.23 1.02 1.82 16 26 N -0.34 -7.75 12.58 -57.03 -0.72 -8.47 16 27 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.20 1.35 8.06 -2.91 -0.02 1.33 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.34 6.71 8.71 -89.69 -0.78 5.92 16 34 H 0.10 1.28 8.08 -2.38 -0.02 1.26 16 35 H 0.04 0.70 8.09 -2.39 -0.02 0.68 16 36 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 37 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 38 H 0.12 3.88 6.30 -2.91 -0.02 3.86 16 39 H 0.06 2.52 7.67 -2.39 -0.02 2.50 16 40 H 0.06 2.47 7.65 -2.39 -0.02 2.45 16 41 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 43 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.12 3.59 8.06 -2.91 -0.02 3.57 16 45 H 0.19 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -74.76 384.70 2.43 -72.33 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.20 Total: 17.19 kcal Atomic # 6 Polarization: -37.84 SS G_CDS: 6.44 Total: -31.40 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -5.30 Total: -88.09 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.94 Total: -15.99 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -74.76 2.43 -72.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237789580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.689 kcal (2) G-P(sol) polarization free energy of solvation -74.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds