Wall clock time and date at job start Tue Mar 31 2020 11:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46494 * 120.00269 * 2 1 4 4 C 1.54066 * 108.80297 * 62.92162 * 3 2 1 5 5 C 1.54057 * 112.82085 * 197.56051 * 4 3 2 6 6 C 1.50470 * 112.50242 * 318.28666 * 5 4 3 7 7 C 1.54241 * 108.52271 * 94.14728 * 6 5 4 8 8 C 1.45541 * 112.40717 * 280.01707 * 7 6 5 9 9 C 1.50475 * 108.87617 * 299.99471 * 3 2 1 10 10 S 1.65606 * 119.99746 * 179.97438 * 2 1 3 11 11 O 1.42095 * 104.27987 * 26.07236 * 10 2 1 12 12 O 1.42102 * 104.27384 * 153.93029 * 10 2 1 13 13 C 1.81401 * 104.45079 * 269.99986 * 10 2 1 14 14 C 1.52997 * 109.46955 * 173.94384 * 13 10 2 15 15 C 1.50701 * 115.54849 * 65.20604 * 14 13 10 16 16 H 1.08001 * 119.99496 * 264.77618 * 15 14 13 17 17 C 1.37875 * 120.00504 * 84.77756 * 15 14 13 18 18 N 1.31519 * 119.99599 * 352.23249 * 17 15 14 19 19 Si 1.86793 * 120.00148 * 172.22848 * 17 15 14 20 20 H 1.48497 * 109.47249 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47052 * 120.00341 * 19 17 15 22 22 H 1.48503 * 109.47352 * 240.00390 * 19 17 15 23 23 C 1.53003 * 117.50222 * 279.52973 * 14 13 10 24 24 C 1.53008 * 117.49976 * 210.86730 * 14 13 10 25 25 H 1.09003 * 109.46963 * 90.00217 * 1 2 3 26 26 H 1.09002 * 109.47588 * 210.00016 * 1 2 3 27 27 H 1.09005 * 109.47382 * 330.00362 * 1 2 3 28 28 H 1.09003 * 108.85718 * 181.43816 * 3 2 1 29 29 H 1.09007 * 108.81262 * 318.42847 * 4 3 2 30 30 H 1.09007 * 108.81337 * 76.80781 * 4 3 2 31 31 H 1.09002 * 108.87830 * 197.50180 * 5 4 3 32 32 H 1.09004 * 108.87678 * 79.06553 * 5 4 3 33 33 H 1.09004 * 109.62571 * 334.43706 * 6 5 4 34 34 H 1.09004 * 109.63229 * 213.86058 * 6 5 4 35 35 H 1.09001 * 108.88968 * 40.76763 * 7 6 5 36 36 H 1.08998 * 108.89324 * 159.35576 * 7 6 5 37 37 H 1.08999 * 108.89386 * 182.68819 * 8 7 6 38 38 H 1.08996 * 108.89311 * 301.27459 * 8 7 6 39 39 H 1.09007 * 109.62713 * 95.11466 * 9 3 2 40 40 H 1.09000 * 109.62948 * 334.54497 * 9 3 2 41 41 H 1.08993 * 109.47260 * 293.94766 * 13 10 2 42 42 H 1.09005 * 109.46661 * 53.94821 * 13 10 2 43 43 H 0.97000 * 119.99755 * 185.01397 * 18 17 15 44 44 H 1.09000 * 117.49685 * 0.02562 * 23 14 13 45 45 H 1.08995 * 117.49484 * 145.02207 * 23 14 13 46 46 H 1.08997 * 117.49683 * 214.98173 * 24 14 13 47 47 H 1.09001 * 117.49231 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 1.8709 2.0307 1.2986 5 6 2.2267 3.5274 1.2187 6 6 3.5468 3.7700 0.5385 7 6 3.2845 4.0462 -0.9561 8 6 3.0656 2.8243 -1.7159 9 6 1.8245 2.0462 -1.2331 10 16 2.2929 -1.4342 0.0006 11 8 1.3969 -2.3564 -0.6042 12 8 3.5394 -1.1195 -0.6047 13 6 2.5192 -1.8255 1.7574 14 6 3.1455 -3.2147 1.8939 15 6 4.5447 -3.3530 1.3515 16 1 4.7010 -3.7221 0.3486 17 6 5.6253 -3.0083 2.1353 18 7 5.4347 -2.4175 3.2948 19 14 7.3599 -3.3807 1.5507 20 1 7.3032 -4.0440 0.2234 21 1 8.1269 -2.1140 1.4382 22 1 8.0287 -4.2794 2.5256 23 6 2.2165 -4.4239 1.7687 24 6 2.7851 -4.0333 3.1353 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 3.2667 1.0581 -0.0259 29 1 0.8049 1.9332 1.5047 30 1 2.4296 1.5815 2.1198 31 1 2.2705 3.9340 2.2291 32 1 1.4442 4.0469 0.6654 33 1 4.1797 2.8886 0.6426 34 1 4.0381 4.6323 0.9895 35 1 2.4038 4.6818 -1.0483 36 1 4.1435 4.5710 -1.3741 37 1 2.9343 3.0811 -2.7671 38 1 3.9424 2.1846 -1.6160 39 1 1.0229 2.7458 -0.9963 40 1 1.4962 1.3596 -2.0135 41 1 3.1760 -1.0845 2.2130 42 1 1.5521 -1.8119 2.2601 43 1 6.1947 -2.1095 3.8129 44 1 1.1592 -4.2298 1.5887 45 1 2.6175 -5.3196 1.2943 46 1 3.5598 -4.6722 3.5592 47 1 2.1021 -3.5819 3.8549 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408190570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:09 Heat of formation + Delta-G solvation = -62.233291 kcal Electronic energy + Delta-G solvation = -26605.087338 eV Core-core repulsion = 23108.224410 eV Total energy + Delta-G solvation = -3496.862928 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.26607 -36.74456 -36.26016 -35.54149 -34.99053 -32.30655 -32.03712 -30.50504 -28.14218 -26.40029 -25.45354 -24.86621 -23.52212 -21.20932 -20.52418 -19.67390 -19.09863 -18.20621 -17.08297 -16.45180 -16.18674 -15.38554 -15.01758 -14.75937 -14.58162 -14.46212 -13.87714 -13.78933 -13.66012 -13.36435 -13.09864 -12.91930 -12.37010 -12.26267 -12.08599 -11.91208 -11.81464 -11.49713 -11.25815 -11.18775 -11.02510 -10.94826 -10.81659 -10.79707 -10.63140 -10.56077 -10.45002 -10.34845 -10.26677 -10.15770 -10.07486 -9.67492 -8.95281 -8.74197 -8.56591 -8.05095 -6.13627 -4.23772 1.08183 3.28373 3.35807 3.36898 3.43786 4.37622 4.55460 4.63221 4.71957 4.82074 4.95048 5.07660 5.13908 5.15001 5.19895 5.24301 5.27914 5.36483 5.45987 5.52234 5.61940 5.69197 5.77315 5.84301 5.85271 5.91524 5.99258 6.03270 6.12749 6.18344 6.19893 6.21214 6.26165 6.29418 6.37830 6.40652 6.48226 6.58584 6.62545 6.72368 6.95455 7.01075 7.26187 7.39268 7.81067 8.21252 8.81849 9.47168 10.94115 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013923 B = 0.005460 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.514004 B = 5126.748832 C = 6036.892619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -1.012 6.012 3 C 0.148 3.852 4 C -0.133 4.133 5 C -0.112 4.112 6 C -0.126 4.126 7 C -0.115 4.115 8 C -0.124 4.124 9 C -0.119 4.119 10 S 2.604 3.396 11 O -0.972 6.972 12 O -0.948 6.948 13 C -0.554 4.554 14 C 0.043 3.957 15 C -0.514 4.514 16 H 0.068 0.932 17 C 0.082 3.918 18 N -0.874 5.874 19 Si 0.891 3.109 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.282 1.282 23 C -0.208 4.208 24 C -0.141 4.141 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.132 0.868 42 H 0.096 0.904 43 H 0.262 0.738 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.715 12.532 -3.347 15.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.848 5.848 3 C 0.042 3.958 4 C -0.172 4.172 5 C -0.150 4.150 6 C -0.163 4.163 7 C -0.152 4.152 8 C -0.162 4.162 9 C -0.159 4.159 10 S 2.702 3.298 11 O -0.962 6.962 12 O -0.938 6.938 13 C -0.686 4.686 14 C 0.040 3.960 15 C -0.551 4.551 16 H 0.087 0.913 17 C -0.123 4.123 18 N -0.510 5.510 19 Si 0.718 3.282 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.208 1.208 23 C -0.246 4.246 24 C -0.181 4.181 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.119 0.881 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.150 0.850 42 H 0.114 0.886 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.376 12.099 -3.969 15.241 hybrid contribution 0.767 0.102 0.674 1.026 sum -7.609 12.201 -3.295 14.752 Atomic orbital electron populations 1.21309 0.79728 1.02279 1.01668 1.58075 1.14537 1.21738 1.90435 1.20781 0.97307 0.83270 0.94400 1.22361 1.02057 0.95070 0.97745 1.21270 0.97520 0.95656 1.00556 1.21427 0.97694 1.02074 0.95134 1.20489 1.01294 0.97901 0.95555 1.20497 0.98806 0.97382 0.99468 1.21676 0.98003 0.98853 0.97323 1.05316 0.73384 0.72216 0.78853 1.93485 1.65378 1.62252 1.75123 1.93520 1.43360 1.82321 1.74603 1.30026 1.07046 1.09455 1.22121 1.18304 0.93689 0.83554 1.00428 1.20560 0.88004 1.46097 1.00475 0.91347 1.24950 0.99298 0.93830 0.94238 1.69992 1.31045 1.37377 1.12570 0.86530 0.84041 0.78433 0.79178 1.19206 1.20625 1.20828 1.23193 0.97573 1.01316 1.02483 1.22550 1.01438 1.04185 0.89879 0.92945 0.91469 0.91484 0.88067 0.91467 0.91450 0.92224 0.92178 0.90987 0.91988 0.92433 0.92453 0.92201 0.91185 0.91541 0.91116 0.84954 0.88586 0.92811 0.90740 0.89538 0.89597 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.20 9.47 59.84 0.57 1.77 16 2 N -1.01 -15.87 2.82 -115.37 -0.33 -16.20 16 3 C 0.15 2.11 1.95 -68.64 -0.13 1.97 16 4 C -0.13 -1.60 5.39 -25.62 -0.14 -1.73 16 5 C -0.11 -1.13 5.31 -27.44 -0.15 -1.27 16 6 C -0.13 -1.32 5.61 -27.35 -0.15 -1.48 16 7 C -0.11 -1.14 5.26 -29.60 -0.16 -1.29 16 8 C -0.12 -1.42 5.26 -29.60 -0.16 -1.57 16 9 C -0.12 -1.46 4.74 -27.35 -0.13 -1.59 16 10 S 2.60 53.92 5.10 -107.50 -0.55 53.37 16 11 O -0.97 -21.74 17.09 -57.54 -0.98 -22.72 16 12 O -0.95 -22.69 16.20 -57.54 -0.93 -23.62 16 13 C -0.55 -11.80 6.03 37.16 0.22 -11.57 16 14 C 0.04 1.05 1.32 -155.66 -0.21 0.84 16 15 C -0.51 -14.17 8.18 -34.44 -0.28 -14.45 16 16 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 17 C 0.08 2.24 5.38 -17.82 -0.10 2.14 16 18 N -0.87 -24.06 12.98 55.43 0.72 -23.34 16 19 Si 0.89 21.48 29.55 -169.99 -5.02 16.45 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 C -0.21 -4.63 9.96 -26.69 -0.27 -4.90 16 24 C -0.14 -3.25 9.49 -26.69 -0.25 -3.50 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.83 7.79 -51.93 -0.40 0.42 16 27 H 0.07 0.66 6.36 -51.93 -0.33 0.33 16 28 H 0.10 1.67 5.29 -51.93 -0.27 1.39 16 29 H 0.07 0.72 6.22 -51.93 -0.32 0.39 16 30 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.54 6.63 -51.93 -0.34 0.20 16 33 H 0.07 0.88 6.98 -51.93 -0.36 0.52 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.51 7.47 -51.93 -0.39 0.12 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.93 7.46 -51.93 -0.39 0.54 16 39 H 0.07 0.69 6.98 -51.92 -0.36 0.32 16 40 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16 41 H 0.13 2.94 8.14 -51.93 -0.42 2.52 16 42 H 0.10 1.74 8.09 -51.92 -0.42 1.32 16 43 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 44 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 45 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 46 H 0.09 2.08 8.14 -51.93 -0.42 1.65 16 47 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -31.60 371.31 -11.03 -42.62 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -8.20 Total: 4.47 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: -1.32 Total: -36.63 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.39 Total: -39.54 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -1.92 Total: -46.35 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 53.92 SS G_CDS: -0.55 Total: 53.37 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.60 -11.03 -42.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408190570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.612 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds