Wall clock time and date at job start Tue Mar 31 2020 11:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46494 * 120.00269 * 2 1 4 4 C 1.54066 * 108.80297 * 62.92162 * 3 2 1 5 5 C 1.54057 * 112.82085 * 197.56051 * 4 3 2 6 6 C 1.50470 * 112.50242 * 318.28666 * 5 4 3 7 7 C 1.54241 * 108.52271 * 94.14728 * 6 5 4 8 8 C 1.45541 * 112.40717 * 280.01707 * 7 6 5 9 9 C 1.50475 * 108.87617 * 299.99471 * 3 2 1 10 10 S 1.65606 * 119.99746 * 179.97438 * 2 1 3 11 11 O 1.42095 * 104.27987 * 26.07236 * 10 2 1 12 12 O 1.42102 * 104.27384 * 153.93029 * 10 2 1 13 13 C 1.81401 * 104.45079 * 269.99986 * 10 2 1 14 14 C 1.52997 * 109.46955 * 173.94384 * 13 10 2 15 15 C 1.50701 * 115.54849 * 65.20604 * 14 13 10 16 16 H 1.08001 * 119.99496 * 264.77618 * 15 14 13 17 17 C 1.37875 * 120.00504 * 84.77756 * 15 14 13 18 18 N 1.31519 * 119.99599 * 352.23249 * 17 15 14 19 19 Si 1.86793 * 120.00148 * 172.22848 * 17 15 14 20 20 H 1.48497 * 109.47249 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47052 * 120.00341 * 19 17 15 22 22 H 1.48503 * 109.47352 * 240.00390 * 19 17 15 23 23 C 1.53003 * 117.50222 * 279.52973 * 14 13 10 24 24 C 1.53008 * 117.49976 * 210.86730 * 14 13 10 25 25 H 1.09003 * 109.46963 * 90.00217 * 1 2 3 26 26 H 1.09002 * 109.47588 * 210.00016 * 1 2 3 27 27 H 1.09005 * 109.47382 * 330.00362 * 1 2 3 28 28 H 1.09003 * 108.85718 * 181.43816 * 3 2 1 29 29 H 1.09007 * 108.81262 * 318.42847 * 4 3 2 30 30 H 1.09007 * 108.81337 * 76.80781 * 4 3 2 31 31 H 1.09002 * 108.87830 * 197.50180 * 5 4 3 32 32 H 1.09004 * 108.87678 * 79.06553 * 5 4 3 33 33 H 1.09004 * 109.62571 * 334.43706 * 6 5 4 34 34 H 1.09004 * 109.63229 * 213.86058 * 6 5 4 35 35 H 1.09001 * 108.88968 * 40.76763 * 7 6 5 36 36 H 1.08998 * 108.89324 * 159.35576 * 7 6 5 37 37 H 1.08999 * 108.89386 * 182.68819 * 8 7 6 38 38 H 1.08996 * 108.89311 * 301.27459 * 8 7 6 39 39 H 1.09007 * 109.62713 * 95.11466 * 9 3 2 40 40 H 1.09000 * 109.62948 * 334.54497 * 9 3 2 41 41 H 1.08993 * 109.47260 * 293.94766 * 13 10 2 42 42 H 1.09005 * 109.46661 * 53.94821 * 13 10 2 43 43 H 0.97000 * 119.99755 * 185.01397 * 18 17 15 44 44 H 1.09000 * 117.49685 * 0.02562 * 23 14 13 45 45 H 1.08995 * 117.49484 * 145.02207 * 23 14 13 46 46 H 1.08997 * 117.49683 * 214.98173 * 24 14 13 47 47 H 1.09001 * 117.49231 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 1.8709 2.0307 1.2986 5 6 2.2267 3.5274 1.2187 6 6 3.5468 3.7700 0.5385 7 6 3.2845 4.0462 -0.9561 8 6 3.0656 2.8243 -1.7159 9 6 1.8245 2.0462 -1.2331 10 16 2.2929 -1.4342 0.0006 11 8 1.3969 -2.3564 -0.6042 12 8 3.5394 -1.1195 -0.6047 13 6 2.5192 -1.8255 1.7574 14 6 3.1455 -3.2147 1.8939 15 6 4.5447 -3.3530 1.3515 16 1 4.7010 -3.7221 0.3486 17 6 5.6253 -3.0083 2.1353 18 7 5.4347 -2.4175 3.2948 19 14 7.3599 -3.3807 1.5507 20 1 7.3032 -4.0440 0.2234 21 1 8.1269 -2.1140 1.4382 22 1 8.0287 -4.2794 2.5256 23 6 2.2165 -4.4239 1.7687 24 6 2.7851 -4.0333 3.1353 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 3.2667 1.0581 -0.0259 29 1 0.8049 1.9332 1.5047 30 1 2.4296 1.5815 2.1198 31 1 2.2705 3.9340 2.2291 32 1 1.4442 4.0469 0.6654 33 1 4.1797 2.8886 0.6426 34 1 4.0381 4.6323 0.9895 35 1 2.4038 4.6818 -1.0483 36 1 4.1435 4.5710 -1.3741 37 1 2.9343 3.0811 -2.7671 38 1 3.9424 2.1846 -1.6160 39 1 1.0229 2.7458 -0.9963 40 1 1.4962 1.3596 -2.0135 41 1 3.1760 -1.0845 2.2130 42 1 1.5521 -1.8119 2.2601 43 1 6.1947 -2.1095 3.8129 44 1 1.1592 -4.2298 1.5887 45 1 2.6175 -5.3196 1.2943 46 1 3.5598 -4.6722 3.5592 47 1 2.1021 -3.5819 3.8549 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408190570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:08 Heat of formation + Delta-G solvation = -81.069161 kcal Electronic energy + Delta-G solvation = -26605.904122 eV Core-core repulsion = 23108.224410 eV Total energy + Delta-G solvation = -3497.679713 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.24515 -38.59022 -37.98981 -36.85090 -36.49641 -34.11256 -33.18175 -31.51195 -29.87028 -27.60258 -27.36962 -25.77500 -24.53983 -23.01949 -21.50575 -21.34981 -20.35612 -19.55171 -18.57775 -18.35981 -17.39642 -16.93940 -16.66344 -16.31218 -15.95343 -15.63634 -15.47050 -14.93119 -14.83552 -14.65428 -14.35261 -13.85085 -13.78903 -13.71863 -13.48044 -13.26057 -13.18117 -13.12286 -12.91733 -12.88108 -12.69851 -12.56610 -12.46840 -12.24626 -11.98430 -11.95613 -11.77486 -11.55692 -11.51036 -11.21147 -11.10719 -11.08152 -10.90189 -10.57878 -10.13316 -9.71150 -8.22144 -6.36587 -0.53287 1.33739 1.36914 1.48296 1.93687 2.36968 2.99070 3.04829 3.32280 3.38978 3.57936 3.80989 3.85968 4.04946 4.15682 4.19477 4.24088 4.31301 4.37014 4.46061 4.48204 4.54682 4.56467 4.62053 4.70197 4.78944 4.82927 4.94138 4.94496 4.95484 5.00980 5.14933 5.18184 5.23281 5.26532 5.36084 5.36974 5.40292 5.45131 5.49041 5.55970 5.58550 5.62557 5.68908 5.81396 6.19906 6.69260 7.35459 8.85107 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013923 B = 0.005460 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.514004 B = 5126.748832 C = 6036.892619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.003 6.003 3 C 0.144 3.856 4 C -0.131 4.131 5 C -0.108 4.108 6 C -0.130 4.130 7 C -0.112 4.112 8 C -0.123 4.123 9 C -0.116 4.116 10 S 2.615 3.385 11 O -0.992 6.992 12 O -0.992 6.992 13 C -0.550 4.550 14 C 0.008 3.992 15 C -0.533 4.533 16 H 0.046 0.954 17 C 0.043 3.957 18 N -0.891 5.891 19 Si 0.935 3.065 20 H -0.273 1.273 21 H -0.276 1.276 22 H -0.269 1.269 23 C -0.196 4.196 24 C -0.137 4.137 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.096 0.904 40 H 0.059 0.941 41 H 0.117 0.883 42 H 0.129 0.871 43 H 0.265 0.735 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.066 0.934 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.763 14.499 -3.034 18.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.842 5.842 3 C 0.038 3.962 4 C -0.170 4.170 5 C -0.146 4.146 6 C -0.167 4.167 7 C -0.150 4.150 8 C -0.161 4.161 9 C -0.155 4.155 10 S 2.714 3.286 11 O -0.982 6.982 12 O -0.982 6.982 13 C -0.682 4.682 14 C 0.006 3.994 15 C -0.571 4.571 16 H 0.064 0.936 17 C -0.160 4.160 18 N -0.527 5.527 19 Si 0.760 3.240 20 H -0.198 1.198 21 H -0.201 1.201 22 H -0.194 1.194 23 C -0.233 4.233 24 C -0.176 4.176 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.121 0.879 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.135 0.865 42 H 0.148 0.852 43 H 0.075 0.925 44 H 0.117 0.883 45 H 0.100 0.900 46 H 0.085 0.915 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.421 14.046 -3.649 17.867 hybrid contribution 1.373 -0.497 0.546 1.559 sum -9.049 13.550 -3.103 16.586 Atomic orbital electron populations 1.21672 0.77202 1.04284 1.02942 1.57694 1.15943 1.20402 1.90155 1.20956 0.95467 0.82893 0.96847 1.22359 1.03063 0.96037 0.95516 1.21273 0.97626 0.94195 1.01525 1.21461 0.97869 1.01344 0.96069 1.20471 1.02572 0.97245 0.94677 1.20509 0.97325 0.97568 1.00707 1.21675 0.99062 0.98961 0.95820 1.04644 0.72659 0.72981 0.78354 1.93444 1.65463 1.63849 1.75447 1.93461 1.45939 1.83268 1.75525 1.29901 1.08116 1.07122 1.23097 1.18441 0.93276 0.85768 1.01914 1.20704 0.90319 1.46307 0.99745 0.93591 1.25518 1.02054 0.93870 0.94591 1.70032 1.31853 1.37813 1.13033 0.85859 0.80889 0.78538 0.78730 1.19802 1.20139 1.19421 1.23239 0.98429 1.00061 1.01586 1.22507 1.01321 1.03569 0.90218 0.92139 0.91101 0.87868 0.91485 0.89291 0.93301 0.91166 0.89974 0.93917 0.90677 0.90142 0.91910 0.90871 0.94295 0.88514 0.92218 0.86451 0.85243 0.92535 0.88279 0.89957 0.91516 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.85 9.47 127.77 1.21 3.06 16 2 N -1.00 -30.51 2.82 -518.92 -1.46 -31.97 16 3 C 0.14 4.00 1.95 44.54 0.09 4.09 16 4 C -0.13 -2.88 5.39 31.31 0.17 -2.71 16 5 C -0.11 -1.87 5.31 30.13 0.16 -1.71 16 6 C -0.13 -2.56 5.61 30.20 0.17 -2.39 16 7 C -0.11 -1.99 5.26 28.74 0.15 -1.84 16 8 C -0.12 -2.72 5.26 28.73 0.15 -2.57 16 9 C -0.12 -2.63 4.74 30.20 0.14 -2.49 16 10 S 2.61 109.69 5.10 -56.49 -0.29 109.40 16 11 O -0.99 -44.25 17.09 -127.65 -2.18 -46.43 16 12 O -0.99 -49.84 16.20 -127.65 -2.07 -51.91 16 13 C -0.55 -23.43 6.03 71.98 0.43 -22.99 16 14 C 0.01 0.40 1.32 -52.92 -0.07 0.33 16 15 C -0.53 -30.29 8.18 25.60 0.21 -30.08 16 16 H 0.05 2.73 7.83 -2.91 -0.02 2.71 16 17 C 0.04 2.38 5.38 84.65 0.46 2.84 16 18 N -0.89 -49.79 12.98 21.45 0.28 -49.51 16 19 Si 0.93 44.83 29.55 68.60 2.03 46.85 16 20 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 C -0.20 -8.59 9.96 30.62 0.30 -8.28 16 24 C -0.14 -6.24 9.49 30.62 0.29 -5.95 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.54 7.79 -2.39 -0.02 1.53 16 27 H 0.10 1.56 6.36 -2.38 -0.02 1.54 16 28 H 0.07 2.34 5.29 -2.39 -0.01 2.33 16 29 H 0.09 1.56 6.22 -2.38 -0.01 1.54 16 30 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.10 6.63 -2.38 -0.02 1.08 16 33 H 0.04 1.09 6.98 -2.38 -0.02 1.07 16 34 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.08 1.10 7.47 -2.39 -0.02 1.08 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.04 1.09 7.46 -2.39 -0.02 1.07 16 39 H 0.10 1.61 6.98 -2.38 -0.02 1.59 16 40 H 0.06 1.48 7.93 -2.39 -0.02 1.46 16 41 H 0.12 5.34 8.14 -2.39 -0.02 5.32 16 42 H 0.13 4.47 8.09 -2.39 -0.02 4.45 16 43 H 0.27 14.03 8.32 -92.71 -0.77 13.26 16 44 H 0.10 3.81 8.14 -2.39 -0.02 3.80 16 45 H 0.08 3.62 8.14 -2.39 -0.02 3.60 16 46 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 47 H 0.09 3.56 8.14 -2.39 -0.02 3.55 16 Total: -1.00 -70.22 371.31 1.10 -69.12 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.93 Total: 25.14 kcal Atomic # 6 Polarization: -74.57 SS G_CDS: 3.87 Total: -70.71 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -1.19 Total: -81.48 kcal Atomic # 8 Polarization: -94.09 SS G_CDS: -4.25 Total: -98.34 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: 109.69 SS G_CDS: -0.29 Total: 109.40 kcal Total: -70.22 1.10 -69.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408190570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.950 kcal (2) G-P(sol) polarization free energy of solvation -70.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds