Wall clock time and date at job start Tue Mar 31 2020 11:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99565 * 2 1 4 4 C 1.53000 * 109.46679 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46920 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.46895 * 179.97438 * 5 4 3 7 7 N 1.40080 * 126.03950 * 89.97514 * 6 5 4 8 8 C 1.30834 * 108.20550 * 179.97438 * 7 6 5 9 9 C 1.39870 * 108.20593 * 0.02562 * 8 7 6 10 10 C 1.34954 * 126.03362 * 270.25771 * 6 5 4 11 11 C 1.50697 * 126.13099 * 0.02562 * 10 6 5 12 12 N 1.46507 * 109.47012 * 275.19923 * 11 10 6 13 13 C 1.39683 * 120.00108 * 179.97438 * 12 11 10 14 14 C 1.39336 * 119.94875 * 359.72658 * 13 12 11 15 15 C 1.38477 * 120.42368 * 179.72062 * 14 13 12 16 16 C 1.37694 * 120.32145 * 0.55633 * 15 14 13 17 17 C 1.40749 * 119.89325 * 359.72086 * 16 15 14 18 18 C 1.41405 * 120.20786 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00308 * 204.45508 * 18 17 16 20 20 C 1.39928 * 120.00087 * 24.45156 * 18 17 16 21 21 N 1.30823 * 120.00061 * 17.89177 * 20 18 17 22 22 Si 1.86805 * 120.00088 * 197.89605 * 20 18 17 23 23 H 1.48500 * 109.47285 * 89.99643 * 22 20 18 24 24 H 1.48500 * 109.47128 * 210.00071 * 22 20 18 25 25 H 1.48498 * 109.47011 * 329.99742 * 22 20 18 26 26 C 1.38276 * 119.95315 * 180.02562 * 13 12 11 27 27 H 1.08998 * 109.47209 * 60.00313 * 1 2 3 28 28 H 1.08999 * 109.46937 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47148 * 300.00077 * 1 2 3 30 30 H 1.08991 * 109.47645 * 60.00168 * 3 2 1 31 31 H 1.09001 * 109.47088 * 299.99261 * 3 2 1 32 32 H 1.08996 * 109.47869 * 59.99803 * 4 3 2 33 33 H 1.09002 * 109.47230 * 299.99223 * 4 3 2 34 34 H 1.08999 * 109.47046 * 59.99870 * 5 4 3 35 35 H 1.08996 * 109.47053 * 299.99560 * 5 4 3 36 36 H 1.08009 * 125.89803 * 179.97438 * 8 7 6 37 37 H 1.07999 * 126.04367 * 179.97438 * 9 8 7 38 38 H 1.08999 * 109.47295 * 35.20045 * 11 10 6 39 39 H 1.08994 * 109.47202 * 155.20347 * 11 10 6 40 40 H 0.97004 * 119.99729 * 0.02562 * 12 11 10 41 41 H 1.08001 * 119.79068 * 0.02562 * 14 13 12 42 42 H 1.08000 * 119.84080 * 180.28297 * 15 14 13 43 43 H 1.08000 * 120.05425 * 179.74860 * 16 15 14 44 44 H 0.97001 * 120.00095 * 179.97438 * 21 20 18 45 45 H 1.07999 * 120.15789 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1576 2.5825 -0.0013 6 7 5.6181 2.4668 -0.0013 7 7 6.4396 2.4007 -1.1340 8 6 7.6812 2.3033 -0.7333 9 6 7.6904 2.3035 0.6654 10 6 6.4091 2.3997 1.0900 11 6 5.9485 2.4298 2.5246 12 7 5.7886 3.8204 2.9570 13 6 5.3664 4.1031 4.2582 14 6 5.0920 3.0615 5.1421 15 6 4.6784 3.3306 6.4360 16 6 4.5226 4.6314 6.8598 17 6 4.7904 5.6938 5.9762 18 6 4.6332 7.0322 6.4045 19 1 4.4470 7.8124 5.6812 20 6 4.7186 7.3459 7.7655 21 7 5.2777 6.5046 8.5969 22 14 4.0342 8.9659 8.3954 23 1 2.6114 8.7858 8.7806 24 1 4.8155 9.4067 9.5788 25 1 4.1316 9.9931 7.3274 26 6 5.2152 5.4159 4.6651 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.8567 0.6439 -0.8908 33 1 3.8574 0.6437 0.8892 34 1 3.8364 3.1236 0.8887 35 1 3.8357 3.1231 -0.8913 36 1 8.5493 2.2337 -1.3722 37 1 8.5650 2.2348 1.2952 38 1 4.9941 1.9105 2.6107 39 1 6.6888 1.9364 3.1543 40 1 5.9752 4.5449 2.3395 41 1 5.2075 2.0379 4.8177 42 1 4.4727 2.5161 7.1148 43 1 4.1959 4.8362 7.8686 44 1 5.3373 6.7223 9.5403 45 1 5.4233 6.2239 3.9793 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449695865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:48 Heat of formation + Delta-G solvation = 30.488054 kcal Electronic energy + Delta-G solvation = -25131.200150 eV Core-core repulsion = 21535.206721 eV Total energy + Delta-G solvation = -3595.993429 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.31083 -39.60702 -39.01906 -36.86038 -35.83023 -34.98733 -32.37525 -31.70550 -31.57662 -29.31703 -27.95697 -27.14693 -26.39220 -25.95447 -23.11714 -22.73472 -22.11327 -21.99449 -20.65484 -19.19385 -18.16341 -17.36268 -17.27171 -17.19614 -16.70630 -16.35174 -16.23133 -15.99701 -15.77838 -15.41842 -15.08072 -14.79050 -14.65197 -14.42744 -14.19203 -13.93779 -13.40200 -13.35203 -13.30769 -13.18496 -12.87124 -12.77618 -12.69108 -12.48061 -12.13465 -12.11540 -12.08331 -11.69692 -11.65814 -11.19851 -11.06439 -10.68885 -10.51496 -10.37591 -9.58706 -9.32664 -8.60163 -7.98721 -6.31497 0.70515 1.05859 1.34711 1.39927 1.44001 1.52558 1.60101 1.82495 2.23286 2.76037 2.81196 2.86792 3.48064 3.52111 3.85700 3.91546 3.95941 4.04402 4.13721 4.31261 4.33652 4.42037 4.49248 4.51152 4.52244 4.55435 4.69650 4.74242 4.76573 4.83369 4.91841 4.99745 5.15260 5.17849 5.18862 5.21968 5.41589 5.56662 5.70752 5.90653 5.96490 6.02697 6.15842 6.21187 6.31514 6.61451 6.69864 6.88582 6.94694 7.03635 7.21714 8.38018 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012200 B = 0.002904 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.532541 B = 9639.751925 C =10956.857434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.065 3.935 4 C -0.123 4.123 5 C 0.133 3.867 6 N -0.365 5.365 7 N -0.319 5.319 8 C 0.044 3.956 9 C -0.260 4.260 10 C 0.066 3.934 11 C 0.203 3.797 12 N -0.747 5.747 13 C 0.237 3.763 14 C -0.299 4.299 15 C -0.074 4.074 16 C -0.230 4.230 17 C 0.113 3.887 18 C -0.503 4.503 19 H 0.071 0.929 20 C 0.037 3.963 21 N -0.823 5.823 22 Si 0.980 3.020 23 H -0.262 1.262 24 H -0.268 1.268 25 H -0.260 1.260 26 C -0.308 4.308 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.214 0.786 37 H 0.161 0.839 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.394 0.606 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.287 0.713 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 -9.299 -15.191 18.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.012 4.012 4 C -0.162 4.162 5 C 0.011 3.989 6 N -0.148 5.148 7 N -0.140 5.140 8 C -0.141 4.141 9 C -0.290 4.290 10 C -0.061 4.061 11 C 0.077 3.923 12 N -0.381 5.381 13 C 0.137 3.863 14 C -0.322 4.322 15 C -0.093 4.093 16 C -0.251 4.251 17 C 0.111 3.889 18 C -0.533 4.533 19 H 0.089 0.911 20 C -0.178 4.178 21 N -0.448 5.448 22 Si 0.801 3.199 23 H -0.187 1.187 24 H -0.193 1.193 25 H -0.184 1.184 26 C -0.332 4.332 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.230 0.770 37 H 0.179 0.821 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.228 0.772 41 H 0.133 0.867 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.107 -9.637 -15.971 19.100 hybrid contribution 0.315 1.125 1.021 1.552 sum -3.793 -8.512 -14.949 17.616 Atomic orbital electron populations 1.22939 0.79211 1.03919 1.00994 1.87821 1.21706 1.28522 1.95668 1.22407 0.92212 0.84864 1.01740 1.21733 0.94545 0.96364 1.03513 1.21663 0.73758 0.97874 1.05569 1.48706 1.06865 1.56192 1.03026 1.77310 1.02860 1.25118 1.08719 1.24375 0.95623 0.98784 0.95270 1.21623 0.96576 1.15191 0.95641 1.21159 0.92013 1.02901 0.90064 1.19609 1.01083 0.84613 0.86974 1.44373 1.77254 1.05825 1.10618 1.17411 0.91964 0.92712 0.84228 1.20158 1.20445 0.96654 0.94973 1.20730 0.97587 0.95654 0.95351 1.21121 1.11226 0.92353 1.00391 1.17672 0.86474 0.93709 0.91094 1.19803 1.45947 0.94245 0.93268 0.91086 1.26727 0.92217 1.02312 0.96562 1.69911 1.31437 1.38045 1.05455 0.85241 0.79110 0.77266 0.78277 1.18670 1.19258 1.18372 1.20476 1.20244 0.93754 0.98688 0.92755 0.88501 0.93384 0.92229 0.91312 0.91118 0.91458 0.88273 0.87374 0.76976 0.82109 0.91354 0.89891 0.77230 0.86673 0.87363 0.88672 0.90277 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.60 16 2 O -0.42 -8.65 10.70 -148.98 -1.59 -10.24 16 3 C 0.06 1.12 5.94 71.98 0.43 1.55 16 4 C -0.12 -2.37 5.91 30.60 0.18 -2.19 16 5 C 0.13 2.63 6.13 86.38 0.53 3.15 16 6 N -0.36 -8.84 3.61 -334.69 -1.21 -10.04 16 7 N -0.32 -8.10 12.58 -57.02 -0.72 -8.82 16 8 C 0.04 0.95 12.02 85.24 1.02 1.98 16 9 C -0.26 -5.92 10.72 21.99 0.24 -5.68 16 10 C 0.07 1.64 6.30 41.40 0.26 1.90 16 11 C 0.20 5.36 4.84 85.63 0.41 5.77 16 12 N -0.75 -24.33 5.72 -343.30 -1.96 -26.30 16 13 C 0.24 9.99 6.64 38.16 0.25 10.25 16 14 C -0.30 -12.56 9.32 22.59 0.21 -12.35 16 15 C -0.07 -3.44 10.02 22.20 0.22 -3.22 16 16 C -0.23 -12.31 8.70 22.76 0.20 -12.11 16 17 C 0.11 6.23 5.57 -21.31 -0.12 6.11 16 18 C -0.50 -27.70 9.05 23.46 0.21 -27.48 16 19 H 0.07 3.80 7.91 -2.91 -0.02 3.77 16 20 C 0.04 1.89 5.14 85.25 0.44 2.33 16 21 N -0.82 -43.80 10.96 21.82 0.24 -43.56 16 22 Si 0.98 38.74 29.60 68.60 2.03 40.77 16 23 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 24 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 25 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 26 C -0.31 -15.12 9.63 22.85 0.22 -14.90 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 34 H 0.10 2.00 7.80 -2.39 -0.02 1.98 16 35 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.21 2.91 8.06 -2.91 -0.02 2.89 16 37 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 38 H 0.07 1.75 7.78 -2.39 -0.02 1.73 16 39 H 0.08 2.16 7.95 -2.39 -0.02 2.14 16 40 H 0.39 12.44 8.47 -92.71 -0.79 11.66 16 41 H 0.12 4.11 6.70 -2.91 -0.02 4.09 16 42 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 43 H 0.10 5.35 6.15 -2.91 -0.02 5.34 16 44 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 45 H 0.09 4.20 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -65.14 379.85 2.94 -62.19 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: 0.20 Total: 39.30 kcal Atomic # 6 Polarization: -49.26 SS G_CDS: 5.96 Total: -43.30 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -3.65 Total: -88.72 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -1.59 Total: -10.24 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -65.14 2.94 -62.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449695865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.682 kcal (2) G-P(sol) polarization free energy of solvation -65.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds