Wall clock time and date at job start Tue Mar 31 2020 11:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00004 * 2 1 4 4 C 1.53001 * 109.47056 * 184.42626 * 3 2 1 5 5 N 1.46503 * 109.46847 * 70.08823 * 4 3 2 6 6 C 1.36939 * 119.99773 * 84.63903 * 5 4 3 7 7 H 1.08001 * 120.00422 * 358.55169 * 6 5 4 8 8 C 1.38815 * 119.99723 * 178.54507 * 6 5 4 9 9 N 1.31612 * 119.99996 * 32.07129 * 8 6 5 10 10 Si 1.86797 * 119.99952 * 212.06453 * 8 6 5 11 11 H 1.48501 * 109.47309 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47191 * 120.00170 * 10 8 6 13 13 H 1.48491 * 109.47510 * 240.00156 * 10 8 6 14 14 C 1.46501 * 119.99986 * 264.64090 * 5 4 3 15 15 C 1.50697 * 109.46908 * 260.84179 * 14 5 4 16 16 C 1.39871 * 126.03988 * 88.60261 * 15 14 5 17 17 N 1.30837 * 108.20387 * 179.97438 * 16 15 14 18 18 N 1.40084 * 108.20173 * 0.02562 * 17 16 15 19 19 C 1.46505 * 126.03051 * 179.97438 * 18 17 16 20 20 C 1.50702 * 109.47070 * 308.33483 * 19 18 17 21 21 C 1.38230 * 120.00429 * 274.71007 * 20 19 18 22 22 C 1.38237 * 120.00165 * 179.76840 * 21 20 19 23 23 C 1.38232 * 119.99926 * 0.50531 * 22 21 20 24 24 C 1.38233 * 119.99668 * 359.75110 * 23 22 21 25 25 C 1.38230 * 120.00356 * 359.97438 * 24 23 22 26 26 C 1.34939 * 107.93095 * 359.75625 * 18 17 16 27 27 H 1.09001 * 109.47251 * 175.52329 * 1 2 3 28 28 H 1.09000 * 109.47425 * 295.52380 * 1 2 3 29 29 H 1.09002 * 109.47113 * 55.52644 * 1 2 3 30 30 H 1.09003 * 109.46756 * 64.43100 * 3 2 1 31 31 H 1.09002 * 109.47321 * 304.43114 * 3 2 1 32 32 H 1.09001 * 109.46853 * 190.08829 * 4 3 2 33 33 H 1.09001 * 109.47221 * 310.08929 * 4 3 2 34 34 H 0.97001 * 119.99838 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.46928 * 20.84396 * 14 5 4 36 36 H 1.09002 * 109.46576 * 140.84661 * 14 5 4 37 37 H 1.08003 * 125.89652 * 359.96349 * 16 15 14 38 38 H 1.08999 * 109.47387 * 68.34187 * 19 18 17 39 39 H 1.09002 * 109.46709 * 188.33947 * 19 18 17 40 40 H 1.08008 * 120.00073 * 0.02562 * 21 20 19 41 41 H 1.08004 * 119.99728 * 180.23397 * 22 21 20 42 42 H 1.08000 * 119.99875 * 179.72429 * 23 22 21 43 43 H 1.08000 * 119.99646 * 179.97438 * 24 23 22 44 44 H 1.08006 * 120.00150 * 179.97438 * 25 24 23 45 45 H 1.08001 * 126.13302 * 180.24197 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5315 1.1864 -0.1113 5 7 3.8879 0.7204 -1.4538 6 6 4.0074 1.6182 -2.4809 7 1 3.8162 2.6668 -2.3066 8 6 4.3746 1.1805 -3.7460 9 7 4.0159 -0.0169 -4.1579 10 14 5.3775 2.2912 -4.8640 11 1 5.6502 3.5757 -4.1704 12 1 6.6630 1.6269 -5.1979 13 1 4.6172 2.5540 -6.1122 14 6 4.1163 -0.7060 -1.6974 15 6 5.5972 -0.9851 -1.6952 16 6 6.3722 -1.3071 -0.5763 17 7 7.6080 -1.4782 -0.9706 18 7 7.6585 -1.2697 -2.3549 19 6 8.8535 -1.3620 -3.1973 20 6 9.9507 -0.5139 -2.6073 21 6 10.0160 0.8350 -2.9020 22 6 11.0196 1.6139 -2.3570 23 6 11.9641 1.0417 -1.5256 24 6 11.9019 -0.3084 -1.2351 25 6 10.8950 -1.0860 -1.7755 26 6 6.4112 -0.9735 -2.7761 27 1 -0.3634 -1.0245 -0.0802 28 1 -0.3634 0.4428 0.9274 29 1 -0.3633 0.5817 -0.8472 30 1 1.7527 1.8178 0.9271 31 1 1.6272 1.8738 -0.8476 32 1 3.9862 2.1607 0.0677 33 1 3.8954 0.4740 0.6291 34 1 4.2722 -0.3226 -5.0421 35 1 3.6352 -1.2902 -0.9129 36 1 3.6961 -0.9812 -2.6648 37 1 6.0127 -1.3985 0.4381 38 1 9.1834 -2.3996 -3.2475 39 1 8.6191 -1.0063 -4.2006 40 1 9.2804 1.2814 -3.5549 41 1 11.0683 2.6686 -2.5844 42 1 12.7508 1.6493 -1.1033 43 1 12.6401 -0.7555 -0.5858 44 1 10.8467 -2.1409 -1.5488 45 1 6.1158 -0.7628 -3.7933 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453596315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:04 Heat of formation + Delta-G solvation = 82.930494 kcal Electronic energy + Delta-G solvation = -26474.093436 eV Core-core repulsion = 22880.374081 eV Total energy + Delta-G solvation = -3593.719354 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 2.97 seconds Orbital eigenvalues (eV) -41.86541 -40.08321 -38.83720 -37.18036 -34.95148 -33.49363 -31.87580 -31.71278 -31.43905 -29.76227 -27.82829 -27.03924 -26.34538 -24.54323 -23.56530 -22.87188 -22.24358 -21.24397 -20.71827 -18.77596 -17.80400 -17.40334 -17.15846 -16.98161 -16.54375 -16.41289 -16.13495 -15.71293 -15.41227 -15.16427 -15.03712 -14.81835 -14.46064 -14.35349 -13.81040 -13.61217 -13.49320 -13.34268 -13.18599 -12.99434 -12.81083 -12.66477 -12.46650 -12.22063 -12.11757 -11.97895 -11.91876 -11.76633 -11.68490 -11.10314 -10.49941 -10.36721 -10.06852 -9.88876 -9.83427 -8.93500 -8.71635 -7.57788 -5.00292 0.24194 0.43304 1.22756 1.40793 1.49197 1.55355 1.89381 2.20669 2.59046 2.86463 3.13919 3.32070 3.52358 3.76238 3.94662 4.03825 4.04959 4.19910 4.31948 4.33756 4.40215 4.45253 4.56314 4.57301 4.62791 4.66633 4.71217 4.74166 4.87689 4.94339 4.98341 5.01108 5.06810 5.08651 5.20734 5.33509 5.47832 5.53003 5.58202 5.67736 5.84993 5.99356 6.02880 6.10065 6.39199 6.49700 6.65535 7.03639 7.32527 8.06568 8.46093 9.25787 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014518 B = 0.004192 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.122978 B = 6677.910250 C = 7479.471612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.406 6.406 3 C 0.050 3.950 4 C 0.146 3.854 5 N -0.591 5.591 6 C -0.242 4.242 7 H 0.066 0.934 8 C -0.028 4.028 9 N -0.898 5.898 10 Si 0.914 3.086 11 H -0.285 1.285 12 H -0.288 1.288 13 H -0.300 1.300 14 C 0.205 3.795 15 C -0.223 4.223 16 C 0.033 3.967 17 N -0.317 5.317 18 N -0.382 5.382 19 C 0.171 3.829 20 C -0.111 4.111 21 C -0.124 4.124 22 C -0.133 4.133 23 C -0.114 4.114 24 C -0.125 4.125 25 C -0.095 4.095 26 C 0.060 3.940 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.031 0.969 30 H 0.059 0.941 31 H 0.028 0.972 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.247 0.753 35 H 0.026 0.974 36 H 0.108 0.892 37 H 0.187 0.813 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.136 0.864 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.132 0.868 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.254 -1.224 5.645 10.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.325 6.325 3 C -0.029 4.029 4 C 0.020 3.980 5 N -0.311 5.311 6 C -0.372 4.372 7 H 0.084 0.916 8 C -0.223 4.223 9 N -0.547 5.547 10 Si 0.745 3.255 11 H -0.210 1.210 12 H -0.215 1.215 13 H -0.228 1.228 14 C 0.079 3.921 15 C -0.236 4.236 16 C -0.153 4.153 17 N -0.139 5.139 18 N -0.166 5.166 19 C 0.050 3.950 20 C -0.112 4.112 21 C -0.143 4.143 22 C -0.151 4.151 23 C -0.132 4.132 24 C -0.142 4.142 25 C -0.114 4.114 26 C -0.085 4.085 27 H 0.108 0.892 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.044 0.956 36 H 0.125 0.875 37 H 0.204 0.796 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.154 0.846 42 H 0.169 0.831 43 H 0.169 0.831 44 H 0.150 0.850 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 10.674 -1.734 5.764 12.254 hybrid contribution -0.920 1.273 -1.289 2.032 sum 9.754 -0.461 4.475 10.741 Atomic orbital electron populations 1.22793 0.80863 1.02949 0.99951 1.87883 1.20398 1.28902 1.95325 1.23294 0.96848 0.84079 0.98669 1.20997 0.91262 0.98830 0.86945 1.44278 1.78727 1.03827 1.04237 1.19371 1.38426 0.89681 0.89709 0.91562 1.24747 1.03322 0.96910 0.97364 1.69932 1.47033 1.20253 1.17458 0.85999 0.80545 0.79752 0.79202 1.21026 1.21530 1.22808 1.19799 0.87584 0.82305 1.02430 1.21109 1.00436 1.10571 0.91436 1.23973 0.90628 1.00540 1.00140 1.77022 1.20697 1.25773 0.90426 1.48709 1.06731 1.55448 1.05736 1.20675 0.81104 1.01134 0.92051 1.19873 0.96620 0.94365 1.00363 1.21158 0.98618 0.93950 1.00527 1.21374 0.95065 1.00488 0.98129 1.21531 0.98909 0.95585 0.97176 1.21491 0.98675 0.94206 0.99872 1.21208 0.94003 1.00819 0.95365 1.22617 0.84260 1.00649 1.00952 0.89168 0.92843 0.95076 0.92263 0.95386 0.92098 0.92179 0.94126 0.95567 0.87504 0.79600 0.87747 0.88189 0.88041 0.84634 0.83120 0.83140 0.85022 0.82304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 11.01 113.37 1.25 2.14 16 2 O -0.41 -15.40 10.67 -148.98 -1.59 -16.99 16 3 C 0.05 1.82 6.24 71.98 0.45 2.27 16 4 C 0.15 5.88 6.01 86.38 0.52 6.40 16 5 N -0.59 -28.65 2.55 -706.33 -1.80 -30.45 16 6 C -0.24 -12.80 9.59 84.03 0.81 -11.99 16 7 H 0.07 3.50 8.00 -2.91 -0.02 3.48 16 8 C -0.03 -1.49 3.80 84.86 0.32 -1.17 16 9 N -0.90 -48.15 8.36 21.65 0.18 -47.97 16 10 Si 0.91 43.24 29.66 68.60 2.03 45.28 16 11 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 13 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 14 C 0.21 9.95 5.58 85.63 0.48 10.43 16 15 C -0.22 -10.18 5.48 -20.14 -0.11 -10.29 16 16 C 0.03 1.36 11.96 85.24 1.02 2.38 16 17 N -0.32 -12.91 12.34 -57.02 -0.70 -13.61 16 18 N -0.38 -15.15 3.69 -351.78 -1.30 -16.45 16 19 C 0.17 5.34 6.64 85.63 0.57 5.91 16 20 C -0.11 -3.36 5.26 -19.87 -0.10 -3.46 16 21 C -0.12 -3.85 9.72 22.27 0.22 -3.64 16 22 C -0.13 -3.43 10.05 22.27 0.22 -3.20 16 23 C -0.11 -2.46 10.05 22.27 0.22 -2.24 16 24 C -0.12 -2.71 10.05 22.27 0.22 -2.49 16 25 C -0.10 -2.46 9.68 22.27 0.22 -2.25 16 26 C 0.06 2.72 10.14 83.54 0.85 3.57 16 27 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.03 0.91 8.13 -2.39 -0.02 0.89 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 31 H 0.03 1.13 8.12 -2.39 -0.02 1.11 16 32 H 0.06 2.35 8.08 -2.39 -0.02 2.33 16 33 H 0.06 2.28 8.02 -2.39 -0.02 2.26 16 34 H 0.25 12.86 8.27 -92.71 -0.77 12.10 16 35 H 0.03 1.23 7.96 -2.39 -0.02 1.21 16 36 H 0.11 5.90 4.95 -2.69 -0.01 5.88 16 37 H 0.19 6.58 8.06 -2.91 -0.02 6.56 16 38 H 0.10 2.74 8.05 -2.39 -0.02 2.72 16 39 H 0.10 2.97 8.05 -2.39 -0.02 2.95 16 40 H 0.10 3.43 8.06 -2.91 -0.02 3.40 16 41 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 43 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 44 H 0.13 3.05 8.06 -2.91 -0.02 3.02 16 45 H 0.16 7.62 6.02 -2.91 -0.02 7.60 16 Total: -1.00 -63.64 376.28 4.93 -58.70 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 0.97 Total: 29.13 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 7.15 Total: -7.64 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -3.62 Total: -108.48 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -1.59 Total: -16.99 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.28 kcal Total: -63.64 4.93 -58.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453596315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.633 kcal (2) G-P(sol) polarization free energy of solvation -63.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.97 seconds