Wall clock time and date at job start Tue Mar 31 2020 10:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.46818 * 2 1 4 4 C 1.36940 * 120.00176 * 275.33193 * 3 2 1 5 5 H 1.08006 * 119.99460 * 37.65836 * 4 3 2 6 6 C 1.38805 * 120.00243 * 217.65753 * 4 3 2 7 7 N 1.31620 * 119.99883 * 21.21723 * 6 4 3 8 8 Si 1.86800 * 120.00045 * 201.21638 * 6 4 3 9 9 H 1.48491 * 109.47432 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47164 * 120.00247 * 8 6 4 11 11 H 1.48510 * 109.46849 * 239.99717 * 8 6 4 12 12 C 1.46504 * 119.99825 * 95.33639 * 3 2 1 13 13 C 1.50707 * 109.47021 * 269.99622 * 12 3 2 14 14 N 1.30971 * 126.43610 * 90.00228 * 13 12 3 15 15 C 1.35217 * 105.58042 * 179.73451 * 14 13 12 16 16 C 1.48422 * 126.41636 * 179.97438 * 15 14 13 17 17 C 1.39324 * 120.11749 * 359.72280 * 16 15 14 18 18 C 1.38019 * 119.87530 * 179.76282 * 17 16 15 19 19 C 1.38321 * 120.12053 * 0.51684 * 18 17 16 20 20 C 1.50707 * 119.87979 * 179.71782 * 19 18 17 21 21 C 1.53002 * 109.46967 * 300.02019 * 20 19 18 22 22 C 1.52997 * 109.46987 * 60.02039 * 20 19 18 23 23 C 1.38319 * 120.23976 * 359.73965 * 19 18 17 24 24 C 1.38017 * 120.12381 * 0.02562 * 23 19 18 25 25 N 1.30767 * 107.16778 * 0.02562 * 15 14 13 26 26 O 1.21285 * 110.10052 * 359.97438 * 25 15 14 27 27 H 1.08996 * 109.47270 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47069 * 299.99956 * 1 2 3 29 29 H 1.09004 * 109.47251 * 59.99887 * 1 2 3 30 30 H 1.08997 * 109.46821 * 240.00342 * 2 1 3 31 31 H 1.09000 * 109.46952 * 119.99721 * 2 1 3 32 32 H 0.97009 * 120.00296 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.46779 * 150.00038 * 12 3 2 34 34 H 1.08993 * 109.47133 * 29.99589 * 12 3 2 35 35 H 1.07998 * 120.06314 * 0.02562 * 17 16 15 36 36 H 1.08000 * 119.93756 * 180.22791 * 18 17 16 37 37 H 1.08990 * 109.47162 * 180.02562 * 20 19 18 38 38 H 1.08995 * 109.47198 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.47233 * 300.00012 * 21 20 19 40 40 H 1.09000 * 109.46965 * 59.99947 * 21 20 19 41 41 H 1.08997 * 109.47444 * 59.99989 * 22 20 19 42 42 H 1.08995 * 109.46905 * 180.02562 * 22 20 19 43 43 H 1.09003 * 109.47407 * 299.99727 * 22 20 19 44 44 H 1.08005 * 119.93854 * 179.97438 * 23 19 18 45 45 H 1.07990 * 120.06293 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1426 2.0635 -1.1808 5 1 1.4090 1.9290 -1.9619 6 6 3.2114 2.9280 -1.3737 7 7 4.3019 2.7982 -0.6483 8 14 3.1020 4.2753 -2.6629 9 1 1.7807 4.2091 -3.3373 10 1 3.2577 5.5997 -2.0093 11 1 4.1805 4.0888 -3.6666 12 6 2.3737 2.0325 1.2633 13 6 1.1617 2.7274 1.8285 14 7 0.2782 2.2094 2.6449 15 6 -0.6169 3.1944 2.8839 16 6 -1.8164 3.1031 3.7531 17 6 -2.1118 1.9127 4.4141 18 6 -3.2259 1.8348 5.2251 19 6 -4.0542 2.9325 5.3739 20 6 -5.2728 2.8394 6.2558 21 6 -6.2004 1.7423 5.7298 22 6 -4.8433 2.5024 7.6850 23 6 -3.7685 4.1151 4.7158 24 6 -2.6545 4.2055 3.9061 25 7 -0.2282 4.2422 2.2048 26 8 0.7895 3.9899 1.5953 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.0487 3.4026 -0.7828 33 1 3.1620 2.7640 1.0857 34 1 2.7262 1.2831 1.9718 35 1 -1.4680 1.0538 4.2953 36 1 -3.4538 0.9136 5.7408 37 1 -5.7991 3.7938 6.2500 38 1 -7.0815 1.6747 6.3678 39 1 -6.5063 1.9824 4.7115 40 1 -5.6740 0.7878 5.7355 41 1 -4.1825 3.2840 8.0598 42 1 -5.7247 2.4347 8.3227 43 1 -4.3170 1.5479 7.6908 44 1 -4.4189 4.9691 4.8351 45 1 -2.4321 5.1295 3.3932 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000503577325.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:28 Heat of formation + Delta-G solvation = 94.429576 kcal Electronic energy + Delta-G solvation = -25867.849293 eV Core-core repulsion = 22274.628576 eV Total energy + Delta-G solvation = -3593.220717 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.68716 -39.64626 -36.35883 -36.04944 -34.57426 -32.20310 -32.01417 -31.06225 -29.77529 -29.05688 -27.40919 -26.57850 -24.52555 -24.01597 -23.13530 -21.99506 -21.31457 -20.49691 -19.88213 -17.52736 -17.31282 -16.65419 -16.24779 -15.38041 -15.28180 -14.98421 -14.29018 -13.99546 -13.95367 -13.87046 -13.82657 -13.66363 -13.32930 -12.79676 -12.67664 -12.53908 -12.41036 -12.04580 -11.94607 -11.53201 -11.48275 -11.39717 -11.21181 -11.03256 -10.92208 -10.85673 -10.82330 -10.68784 -10.38948 -10.35857 -10.13706 -10.03250 -9.42009 -8.99062 -8.69584 -8.34613 -6.91241 -6.05775 -3.63389 0.89659 1.36804 2.05960 2.94863 3.29440 3.39080 3.42448 3.74743 3.86688 4.03778 4.35047 4.43186 4.53696 4.65538 4.92774 4.95138 5.04693 5.15982 5.18244 5.33219 5.34932 5.37609 5.45403 5.55652 5.58710 5.69633 5.70800 5.91443 5.96342 5.97796 5.99931 6.01648 6.20970 6.27357 6.32674 6.37557 6.48892 6.51464 6.59403 6.63383 6.71357 6.82633 6.89266 7.08248 7.14513 7.66573 8.26007 8.89612 8.90944 9.52247 10.07878 10.96985 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023322 B = 0.002972 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.307484 B = 9420.119613 C = 9921.309487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.142 3.858 3 N -0.561 5.561 4 C -0.272 4.272 5 H 0.066 0.934 6 C 0.022 3.978 7 N -0.880 5.880 8 Si 0.901 3.099 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.286 1.286 12 C 0.217 3.783 13 C 0.205 3.795 14 N -0.502 5.502 15 C 0.190 3.810 16 C -0.007 4.007 17 C -0.075 4.075 18 C -0.119 4.119 19 C -0.070 4.070 20 C -0.057 4.057 21 C -0.145 4.145 22 C -0.144 4.144 23 C -0.122 4.122 24 C -0.086 4.086 25 N -0.398 5.398 26 O 0.077 5.923 27 H 0.039 0.961 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.261 0.739 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.135 0.865 36 H 0.125 0.875 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.125 0.875 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.615 -1.490 13.378 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.017 3.983 3 N -0.280 5.280 4 C -0.402 4.402 5 H 0.084 0.916 6 C -0.180 4.180 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.213 1.213 12 C 0.085 3.915 13 C -0.017 4.017 14 N -0.237 5.237 15 C -0.080 4.080 16 C -0.009 4.009 17 C -0.095 4.095 18 C -0.137 4.137 19 C -0.071 4.071 20 C -0.076 4.076 21 C -0.202 4.202 22 C -0.202 4.202 23 C -0.140 4.140 24 C -0.106 4.106 25 N -0.109 5.109 26 O 0.020 5.980 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.144 0.856 34 H 0.098 0.902 35 H 0.153 0.847 36 H 0.143 0.857 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.143 0.857 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.993 -0.996 13.555 20.236 hybrid contribution -0.004 0.808 -0.832 1.160 sum -14.997 -0.188 12.723 19.667 Atomic orbital electron populations 1.22324 0.99655 0.99471 1.01604 1.20966 0.91873 0.85903 0.99554 1.43815 1.74596 1.08372 1.01264 1.19102 1.05362 1.22337 0.93355 0.91610 1.25235 0.93910 1.00692 0.98167 1.69938 1.03143 1.36976 1.42003 0.86266 0.77946 0.81945 0.80924 1.19869 1.20818 1.21282 1.20053 0.87459 0.96898 0.87049 1.31821 0.99691 0.80907 0.89268 1.71967 1.04546 1.28880 1.18319 1.23839 0.97769 0.86803 0.99567 1.17404 0.91363 0.95096 0.97000 1.21214 0.96655 0.96991 0.94661 1.20875 0.94801 0.98501 0.99525 1.19966 0.96194 0.93679 0.97221 1.20144 0.93300 1.00031 0.94080 1.21865 0.98838 0.98348 1.01154 1.21862 1.01300 1.02001 0.95010 1.20918 0.97505 0.97593 0.97951 1.21170 0.93789 0.97998 0.97650 1.74754 1.01283 1.23802 1.11014 1.85297 1.29668 1.31291 1.51742 0.94170 0.92955 0.93539 0.92850 0.93930 0.92876 0.85605 0.90185 0.84709 0.85667 0.90459 0.92415 0.92448 0.92302 0.92471 0.92421 0.92307 0.85734 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 10.21 37.16 0.38 -2.88 16 2 C 0.14 2.90 6.44 -4.04 -0.03 2.88 16 3 N -0.56 -13.21 2.42 -174.61 -0.42 -13.63 16 4 C -0.27 -7.05 9.45 -15.06 -0.14 -7.19 16 5 H 0.07 1.74 7.92 -52.48 -0.42 1.32 16 6 C 0.02 0.57 4.96 -17.43 -0.09 0.48 16 7 N -0.88 -23.31 11.46 55.49 0.64 -22.67 16 8 Si 0.90 20.79 29.60 -169.99 -5.03 15.76 16 9 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 12 C 0.22 4.80 5.95 -5.19 -0.03 4.76 16 13 C 0.21 4.47 7.93 -12.99 -0.10 4.36 16 14 N -0.50 -10.35 10.33 -9.88 -0.10 -10.45 16 15 C 0.19 3.79 7.80 -156.11 -1.22 2.57 16 16 C -0.01 -0.11 5.88 -104.89 -0.62 -0.73 16 17 C -0.08 -1.08 9.70 -39.26 -0.38 -1.46 16 18 C -0.12 -1.37 8.69 -39.63 -0.34 -1.71 16 19 C -0.07 -0.75 4.79 -104.56 -0.50 -1.25 16 20 C -0.06 -0.46 3.09 -91.77 -0.28 -0.74 16 21 C -0.14 -1.06 9.01 37.16 0.33 -0.73 16 22 C -0.14 -1.04 9.01 37.16 0.33 -0.70 16 23 C -0.12 -1.41 9.66 -39.63 -0.38 -1.80 16 24 C -0.09 -1.24 9.69 -39.26 -0.38 -1.62 16 25 N -0.40 -8.50 11.86 30.97 0.37 -8.13 16 26 O 0.08 1.74 11.29 18.04 0.20 1.94 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 1.06 7.03 -51.93 -0.37 0.69 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 31 H 0.04 0.80 7.83 -51.93 -0.41 0.39 16 32 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 33 H 0.13 3.05 5.51 -51.93 -0.29 2.76 16 34 H 0.08 1.62 7.86 -51.93 -0.41 1.21 16 35 H 0.14 1.94 7.88 -52.49 -0.41 1.53 16 36 H 0.13 1.16 7.08 -52.49 -0.37 0.79 16 37 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.43 7.38 -51.93 -0.38 0.05 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.42 7.38 -51.93 -0.38 0.04 16 44 H 0.12 1.14 7.94 -52.48 -0.42 0.73 16 45 H 0.13 1.86 7.87 -52.49 -0.41 1.45 16 LS Contribution 375.33 15.07 5.66 5.66 Total: -1.00 -27.95 375.33 -8.90 -36.85 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.76 Total: 0.44 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -3.45 Total: -5.76 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.48 Total: -54.88 kcal Atomic # 8 Polarization: 1.74 SS G_CDS: 0.20 Total: 1.94 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -27.95 -8.90 -36.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000503577325.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.278 kcal (2) G-P(sol) polarization free energy of solvation -27.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds