Wall clock time and date at job start Tue Mar 31 2020 11:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34223 * 117.00390 * 2 1 4 4 O 1.20828 * 119.99866 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00013 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.46957 * 185.74226 * 5 3 2 7 7 N 1.46899 * 109.47390 * 305.67284 * 6 5 3 8 8 C 1.46898 * 111.00220 * 297.22574 * 7 6 5 9 9 C 1.53003 * 109.47196 * 174.71968 * 8 7 6 10 10 C 1.52998 * 109.47108 * 180.02562 * 9 8 7 11 11 S 1.81003 * 109.46871 * 180.02562 * 10 9 8 12 12 C 1.76203 * 99.99630 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00156 * 359.97438 * 12 11 10 14 14 C 1.38801 * 119.99908 * 180.02562 * 12 11 10 15 15 N 1.31624 * 120.00073 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 119.99741 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47371 * 90.00410 * 16 14 12 18 18 H 1.48508 * 109.46975 * 209.99972 * 16 14 12 19 19 H 1.48494 * 109.47493 * 330.00082 * 16 14 12 20 20 C 1.53000 * 109.47084 * 185.67752 * 6 5 3 21 21 C 1.53000 * 109.47389 * 180.02562 * 20 6 5 22 22 C 1.53001 * 109.47051 * 59.99691 * 21 20 6 23 23 C 1.53008 * 109.47133 * 300.00181 * 22 21 20 24 24 C 1.52999 * 109.46994 * 60.00201 * 23 22 21 25 25 H 1.09005 * 109.46584 * 300.00297 * 1 2 3 26 26 H 1.09005 * 109.47064 * 59.99815 * 1 2 3 27 27 H 1.09002 * 109.47450 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46963 * 305.74388 * 5 3 2 29 29 H 1.09005 * 109.47119 * 65.74428 * 5 3 2 30 30 H 1.00901 * 111.00182 * 173.26507 * 7 6 5 31 31 H 1.08990 * 109.47285 * 294.72299 * 8 7 6 32 32 H 1.09006 * 109.47005 * 54.72140 * 8 7 6 33 33 H 1.09004 * 109.47269 * 300.00482 * 9 8 7 34 34 H 1.08994 * 109.46914 * 59.99830 * 9 8 7 35 35 H 1.09006 * 109.46863 * 299.99871 * 10 9 8 36 36 H 1.08997 * 109.47087 * 60.00062 * 10 9 8 37 37 H 0.96997 * 119.99943 * 179.97438 * 15 14 12 38 38 H 1.09005 * 109.46808 * 299.99655 * 20 6 5 39 39 H 1.08993 * 109.47562 * 59.99692 * 20 6 5 40 40 H 1.09002 * 109.47039 * 300.00171 * 21 20 6 41 41 H 1.08997 * 109.47221 * 179.97438 * 21 20 6 42 42 H 1.08999 * 109.47282 * 180.02562 * 22 21 20 43 43 H 1.08997 * 109.47634 * 60.00061 * 22 21 20 44 44 H 1.08999 * 109.46685 * 299.99872 * 23 22 21 45 45 H 1.09000 * 109.46800 * 180.02562 * 23 22 21 46 46 H 1.08997 * 109.46916 * 180.02562 * 24 23 22 47 47 H 1.09000 * 109.46898 * 59.99777 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0007 2.7346 0.1439 7 7 3.3590 3.5422 -0.9020 8 6 3.7890 3.1106 -2.2387 9 6 3.0039 3.8825 -3.3011 10 6 3.4514 3.4324 -4.6932 11 16 2.5230 4.3462 -5.9500 12 6 3.2196 3.6501 -7.4112 13 1 3.9857 2.8925 -7.3362 14 6 2.7846 4.0762 -8.6584 15 7 3.3053 3.5566 -9.7500 16 14 1.4601 5.3870 -8.7879 17 1 2.0941 6.7294 -8.8261 18 1 0.6741 5.1755 -10.0301 19 1 0.5591 5.2985 -7.6109 20 6 5.5210 2.8309 0.0015 21 6 5.9555 4.2907 0.1466 22 6 5.5380 4.8127 1.5229 23 6 4.0176 4.7164 1.6652 24 6 3.5832 3.2566 1.5202 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.9609 0.6940 0.8332 29 1 3.9510 0.8722 -0.9378 30 1 3.5415 4.5248 -0.7632 31 1 4.8541 3.3081 -2.3591 32 1 3.6023 2.0428 -2.3532 33 1 1.9387 3.6850 -3.1807 34 1 3.1906 4.9502 -3.1865 35 1 4.5166 3.6297 -4.8139 36 1 3.2643 2.3647 -4.8075 37 1 3.0010 3.8541 -10.6216 38 1 5.9973 2.2317 0.7776 39 1 5.8185 2.4586 -0.9787 40 1 5.4792 4.8903 -0.6291 41 1 7.0386 4.3592 0.0457 42 1 5.8471 5.8528 1.6261 43 1 6.0141 4.2132 2.2987 44 1 3.5414 5.3160 0.8894 45 1 3.7202 5.0887 2.6455 46 1 2.5001 3.1881 1.6211 47 1 4.0595 2.6570 2.2959 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533527619.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:45 Heat of formation + Delta-G solvation = -108.119327 kcal Electronic energy + Delta-G solvation = -25145.872451 eV Core-core repulsion = 21647.019755 eV Total energy + Delta-G solvation = -3498.852696 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.93647 -39.48473 -36.32407 -35.37569 -33.14321 -32.41441 -31.09315 -30.47637 -28.51607 -26.82279 -25.74737 -24.75922 -23.01792 -22.17690 -21.06533 -20.52386 -18.84182 -17.55124 -17.40696 -16.69973 -16.46147 -16.19678 -15.42098 -15.04917 -14.96977 -14.79614 -14.46129 -14.12062 -13.74652 -13.56937 -13.31029 -12.86095 -12.77387 -12.47602 -12.47171 -12.40397 -12.21713 -12.03236 -11.77241 -11.68935 -11.43042 -11.33911 -11.02611 -10.99765 -10.81060 -10.70379 -10.54069 -10.43682 -10.27732 -10.08897 -10.06064 -9.73544 -8.98088 -8.51958 -8.22121 -6.90490 -6.26203 -3.97759 2.35480 2.69968 3.04174 3.32129 3.48576 3.59926 4.10325 4.29929 4.34393 4.41048 4.55972 4.79603 4.82737 4.87314 4.91707 5.03077 5.06704 5.11911 5.12709 5.16545 5.19338 5.25593 5.30412 5.38954 5.41125 5.46637 5.48144 5.54666 5.65602 5.70447 5.81637 5.85140 5.88042 5.89621 6.03438 6.04498 6.15861 6.20385 6.28504 6.46981 6.56018 6.71612 7.12385 7.43116 7.90802 7.97689 8.46243 9.20069 10.83380 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014034 B = 0.003240 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.636326 B = 8640.340201 C = 9808.453376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.372 6.372 3 C 0.454 3.546 4 O -0.462 6.462 5 C -0.104 4.104 6 C 0.131 3.869 7 N -0.660 5.660 8 C 0.057 3.943 9 C -0.095 4.095 10 C -0.080 4.080 11 S -0.215 6.215 12 C -0.502 4.502 13 H 0.087 0.913 14 C 0.092 3.908 15 N -0.883 5.883 16 Si 0.861 3.139 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.237 1.237 20 C -0.150 4.150 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.112 4.112 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.343 0.657 31 H 0.033 0.967 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.270 0.730 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.082 0.918 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.063 -3.937 26.715 27.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.290 6.290 3 C 0.294 3.706 4 O -0.345 6.345 5 C -0.142 4.142 6 C 0.039 3.961 7 N -0.292 5.292 8 C -0.073 4.073 9 C -0.134 4.134 10 C -0.229 4.229 11 S 0.013 5.987 12 C -0.649 4.649 13 H 0.105 0.895 14 C -0.116 4.116 15 N -0.520 5.520 16 Si 0.686 3.314 17 H -0.194 1.194 18 H -0.201 1.201 19 H -0.161 1.161 20 C -0.189 4.189 21 C -0.158 4.158 22 C -0.158 4.158 23 C -0.158 4.158 24 C -0.149 4.149 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.164 0.836 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.433 -3.197 26.602 26.797 hybrid contribution 1.247 -0.126 -0.696 1.434 sum 1.681 -3.323 25.907 26.173 Atomic orbital electron populations 1.23179 0.76664 1.03233 1.02495 1.86486 1.23215 1.34373 1.84921 1.23440 0.91821 0.81399 0.73920 1.90715 1.66318 1.35461 1.41997 1.21530 0.88835 0.98442 1.05400 1.20647 0.91083 0.91087 0.93238 1.60670 1.60471 1.07599 1.00499 1.22072 0.96916 0.99959 0.88366 1.21245 1.00965 0.99664 0.91541 1.23006 1.01871 1.02109 0.95962 1.84185 1.55610 1.56824 1.02121 1.22140 1.26277 1.27098 0.89412 0.89497 1.24791 0.96152 0.96100 0.94600 1.69938 1.42110 1.42241 0.97722 0.86672 0.82868 0.82188 0.79636 1.19396 1.20128 1.16137 1.22259 0.96444 0.97559 1.02632 1.21520 1.00951 0.95785 0.97573 1.21572 0.96232 1.00881 0.97106 1.21532 0.95422 0.96882 1.01951 1.21685 1.02717 0.96089 0.94451 0.92266 0.91763 0.88583 0.88031 0.87778 0.83607 0.94932 0.91565 0.90762 0.91859 0.91716 0.91599 0.92015 0.91380 0.91159 0.91846 0.91747 0.92058 0.92103 0.91350 0.91968 0.89940 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.41 16 2 O -0.37 -4.20 10.56 -39.24 -0.41 -4.61 16 3 C 0.45 5.37 7.44 36.01 0.27 5.64 16 4 O -0.46 -6.62 12.93 -18.75 -0.24 -6.86 16 5 C -0.10 -0.95 4.41 -27.88 -0.12 -1.07 16 6 C 0.13 1.22 0.28 -131.60 -0.04 1.18 16 7 N -0.66 -7.66 4.15 -99.97 -0.41 -8.07 16 8 C 0.06 0.74 4.83 -3.82 -0.02 0.72 16 9 C -0.10 -1.54 5.52 -26.73 -0.15 -1.69 16 10 C -0.08 -1.60 5.67 37.16 0.21 -1.39 16 11 S -0.22 -5.39 19.41 -107.50 -2.09 -7.48 16 12 C -0.50 -14.82 10.04 30.94 0.31 -14.51 16 13 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 14 C 0.09 2.72 5.50 -17.43 -0.10 2.62 16 15 N -0.88 -27.13 13.97 55.49 0.78 -26.36 16 16 Si 0.86 21.95 27.74 -169.99 -4.71 17.24 16 17 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.24 -5.97 6.74 56.52 0.38 -5.58 16 20 C -0.15 -1.22 4.27 -26.73 -0.11 -1.33 16 21 C -0.12 -0.98 5.66 -26.73 -0.15 -1.13 16 22 C -0.12 -0.89 5.92 -26.73 -0.16 -1.04 16 23 C -0.12 -0.98 5.66 -26.73 -0.15 -1.13 16 24 C -0.11 -0.99 4.67 -26.73 -0.12 -1.11 16 25 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 26 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.10 0.93 6.65 -51.93 -0.35 0.59 16 30 H 0.34 3.89 5.27 -39.29 -0.21 3.69 16 31 H 0.03 0.40 6.56 -51.93 -0.34 0.06 16 32 H 0.07 0.87 6.25 -51.93 -0.32 0.54 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.28 8.14 -51.91 -0.42 0.85 16 36 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 37 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.62 6.48 -51.93 -0.34 0.28 16 40 H 0.06 0.58 6.83 -51.93 -0.35 0.23 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.63 6.51 -51.93 -0.34 0.29 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.08 0.90 6.23 -51.93 -0.32 0.58 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 371.23 15.07 5.59 5.59 Total: -1.00 -32.77 371.23 -8.83 -41.61 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -8.07 Total: 1.78 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 0.73 Total: -12.84 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.36 Total: -34.43 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -0.66 Total: -11.47 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.24 kcal Atomic # 16 Polarization: -5.39 SS G_CDS: -2.09 Total: -7.48 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.77 -8.83 -41.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533527619.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.514 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds