Wall clock time and date at job start Tue Mar 31 2020 11:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81399 * 103.00217 * 2 1 4 4 C 1.53002 * 109.54320 * 297.67081 * 3 2 1 5 5 N 1.46501 * 109.46955 * 304.89475 * 4 3 2 6 6 C 1.34774 * 120.00360 * 178.24532 * 5 4 3 7 7 O 1.21281 * 119.99607 * 359.72224 * 6 5 4 8 8 C 1.50698 * 120.00664 * 179.97438 * 6 5 4 9 9 C 1.52991 * 109.47394 * 179.72174 * 8 6 5 10 10 C 1.52999 * 109.47370 * 180.02562 * 9 8 6 11 11 C 1.52996 * 109.47750 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47742 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99659 * 359.97438 * 12 11 10 14 14 C 1.37867 * 120.00287 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00050 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00148 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47261 * 59.99706 * 16 14 12 18 18 H 1.48502 * 109.47107 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46920 * 299.99668 * 16 14 12 20 20 C 1.53176 * 109.54261 * 57.84801 * 3 2 1 21 21 C 1.53283 * 109.06391 * 176.85552 * 20 3 2 22 22 O 1.42907 * 109.45584 * 302.44149 * 21 20 3 23 23 C 1.42900 * 114.09807 * 61.15897 * 22 21 20 24 24 C 1.53090 * 109.41739 * 298.84345 * 23 22 21 25 25 H 1.09004 * 109.47292 * 56.36458 * 1 2 3 26 26 H 1.08998 * 109.47009 * 176.36480 * 1 2 3 27 27 H 1.09000 * 109.46936 * 296.36984 * 1 2 3 28 28 H 1.08998 * 109.46898 * 184.89927 * 4 3 2 29 29 H 1.08999 * 109.47204 * 64.89326 * 4 3 2 30 30 H 0.97005 * 120.00118 * 358.24323 * 5 4 3 31 31 H 1.09003 * 109.46742 * 299.72647 * 8 6 5 32 32 H 1.09004 * 109.46812 * 59.72415 * 8 6 5 33 33 H 1.08995 * 109.47785 * 300.00193 * 9 8 6 34 34 H 1.09004 * 109.46944 * 60.00322 * 9 8 6 35 35 H 1.09005 * 109.47250 * 300.00462 * 10 9 8 36 36 H 1.09004 * 109.46846 * 60.00235 * 10 9 8 37 37 H 1.09005 * 109.46850 * 300.00374 * 11 10 9 38 38 H 1.08996 * 109.47102 * 59.99686 * 11 10 9 39 39 H 0.97001 * 120.00024 * 180.02562 * 15 14 12 40 40 H 1.09001 * 109.51852 * 296.84247 * 20 3 2 41 41 H 1.08990 * 109.52454 * 57.02995 * 20 3 2 42 42 H 1.08997 * 109.46030 * 182.44647 * 21 20 3 43 43 H 1.08998 * 109.46942 * 62.44079 * 21 20 3 44 44 H 1.09003 * 109.48380 * 178.85527 * 23 22 21 45 45 H 1.09006 * 109.48846 * 58.82853 * 23 22 21 46 46 H 1.09006 * 109.52131 * 297.69825 * 24 23 22 47 47 H 1.09005 * 109.57778 * 177.54704 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.6849 2.4168 -1.2770 5 7 2.2039 1.7004 -2.4447 6 6 1.8337 2.0758 -3.6851 7 8 1.0670 3.0036 -3.8343 8 6 2.3680 1.3393 -4.8863 9 6 1.7906 1.9567 -6.1615 10 6 2.3326 1.2084 -7.3811 11 6 1.7557 1.8262 -8.6564 12 6 2.2890 1.0888 -9.8576 13 1 2.9716 0.2625 -9.7247 14 6 1.9065 1.4698 -11.1262 15 7 1.0758 2.4764 -11.2880 16 14 2.5682 0.5562 -12.6152 17 1 2.1726 -0.8729 -12.5351 18 1 2.0081 1.1558 -13.8529 19 1 4.0493 0.6591 -12.6410 20 6 1.5889 2.4396 1.2221 21 6 2.0051 3.9145 1.2542 22 8 3.4310 4.0062 1.2811 23 6 4.0741 3.4349 0.1400 24 6 3.7425 1.9423 0.0632 25 1 -0.3634 0.5692 -0.8556 26 1 -0.3633 -1.0256 -0.0652 27 1 -0.3633 0.4565 0.9207 28 1 2.0051 3.4579 -1.3176 29 1 0.5958 2.3713 -1.2773 30 1 2.8140 0.9558 -2.3252 31 1 3.4552 1.4158 -4.9055 32 1 2.0786 0.2900 -4.8274 33 1 0.7035 1.8801 -6.1424 34 1 2.0800 3.0059 -6.2204 35 1 3.4198 1.2846 -7.4005 36 1 2.0428 0.1593 -7.3220 37 1 0.6685 1.7504 -8.6372 38 1 2.0457 2.8752 -8.7153 39 1 0.8063 2.7442 -12.1805 40 1 0.5033 2.3666 1.1563 41 1 1.9338 1.9443 2.1297 42 1 1.5935 4.3886 2.1451 43 1 1.6252 4.4186 0.3656 44 1 5.1529 3.5636 0.2282 45 1 3.7213 3.9325 -0.7634 46 1 4.1309 1.4369 0.9474 47 1 4.1960 1.5129 -0.8303 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588159206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:07 Heat of formation + Delta-G solvation = -113.699994 kcal Electronic energy + Delta-G solvation = -24299.196839 eV Core-core repulsion = 20800.102147 eV Total energy + Delta-G solvation = -3499.094692 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.58490 -39.32668 -36.05475 -34.84658 -33.40516 -32.57936 -31.81470 -29.88430 -29.30145 -27.41985 -25.52131 -24.65785 -24.17080 -22.25477 -20.36801 -19.99239 -19.71495 -17.69835 -16.96786 -16.53833 -16.34106 -16.05615 -16.00551 -15.62412 -15.29996 -14.94161 -14.55476 -14.37900 -14.25609 -13.98458 -13.84204 -13.40428 -13.16519 -12.94630 -12.60184 -12.45260 -12.20818 -12.00410 -11.90424 -11.66870 -11.58896 -11.47643 -10.95676 -10.88212 -10.59718 -10.52886 -10.51231 -10.39334 -9.85603 -9.78394 -9.59606 -9.20994 -9.20445 -8.97826 -8.29137 -8.14421 -5.94041 -3.96602 1.12136 2.01838 2.71357 3.05606 3.36112 3.38285 3.40386 3.42726 3.89188 3.92583 4.24745 4.38130 4.49890 4.67882 4.69234 4.73655 4.74338 4.83988 4.87818 4.98480 5.08809 5.14793 5.21647 5.26568 5.33599 5.35527 5.39689 5.41658 5.45920 5.48831 5.61470 5.88158 6.15553 6.24131 6.32379 6.56284 6.67605 6.85574 7.03432 7.21583 7.41937 7.75124 7.91482 8.07418 8.24453 8.49244 9.10975 9.66956 11.17290 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.024500 B = 0.002168 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.589644 B =12910.232099 C =13300.776734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.240 6.240 3 C -0.042 4.042 4 C 0.124 3.876 5 N -0.731 5.731 6 C 0.512 3.488 7 O -0.538 6.538 8 C -0.138 4.138 9 C -0.103 4.103 10 C -0.110 4.110 11 C 0.020 3.980 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.143 4.143 21 C 0.059 3.941 22 O -0.377 6.377 23 C 0.062 3.938 24 C -0.130 4.130 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.404 0.596 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.057 0.943 44 H 0.102 0.898 45 H 0.058 0.942 46 H 0.086 0.914 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.840 -2.026 30.925 31.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.010 6.010 3 C -0.152 4.152 4 C -0.002 4.002 5 N -0.386 5.386 6 C 0.300 3.700 7 O -0.414 6.414 8 C -0.178 4.178 9 C -0.141 4.141 10 C -0.148 4.148 11 C -0.017 4.017 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.183 4.183 21 C -0.020 4.020 22 O -0.296 6.296 23 C -0.016 4.016 24 C -0.169 4.169 25 H 0.099 0.901 26 H 0.121 0.879 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.241 0.759 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.118 0.882 43 H 0.075 0.925 44 H 0.121 0.879 45 H 0.077 0.923 46 H 0.105 0.895 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.943 -2.109 30.812 31.024 hybrid contribution -0.504 -0.086 -1.027 1.147 sum 2.439 -2.195 29.785 29.966 Atomic orbital electron populations 1.23466 0.93872 1.06800 1.05190 1.86814 1.07905 1.08801 1.97472 1.23086 0.99884 0.94575 0.97671 1.21489 0.98909 0.96379 0.83445 1.46163 1.50687 1.36608 1.05140 1.21125 0.80675 0.83964 0.84232 1.90705 1.35047 1.29453 1.86202 1.21785 1.02152 1.00742 0.93101 1.21444 1.00736 1.00049 0.91840 1.21649 0.99443 0.98657 0.95036 1.19088 0.96198 0.96038 0.90364 1.21248 1.27425 1.15956 0.91257 0.92808 1.25039 0.95243 0.95199 0.99083 1.69965 1.33856 1.27289 1.22416 0.86671 0.79206 0.80002 0.82173 1.20288 1.21328 1.20276 1.22538 1.01149 0.97329 0.97280 1.22706 0.81728 0.94611 1.02911 1.87966 1.18717 1.79719 1.43156 1.22674 0.98572 0.91184 0.89217 1.22069 0.91787 0.98644 1.04441 0.90111 0.87863 0.90305 0.90411 0.91336 0.75935 0.89142 0.89058 0.91883 0.91848 0.93475 0.93474 0.96633 0.96613 0.92995 0.90326 0.89153 0.88177 0.92499 0.87946 0.92343 0.89546 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.87 101.05 1.00 0.21 16 2 S -0.24 -1.81 20.23 -107.50 -2.17 -3.99 16 3 C -0.04 -0.29 0.43 -90.44 -0.04 -0.33 16 4 C 0.12 1.09 3.78 -4.04 -0.02 1.08 16 5 N -0.73 -7.18 4.93 -60.29 -0.30 -7.48 16 6 C 0.51 6.97 7.83 -10.99 -0.09 6.89 16 7 O -0.54 -9.58 15.98 5.56 0.09 -9.49 16 8 C -0.14 -1.83 5.70 -27.89 -0.16 -1.99 16 9 C -0.10 -1.84 4.50 -26.74 -0.12 -1.96 16 10 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 11 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 12 C -0.52 -15.09 9.11 -34.45 -0.31 -15.41 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.68 13.29 55.43 0.74 -26.95 16 16 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C -0.14 -0.84 4.68 -26.49 -0.12 -0.96 16 21 C 0.06 0.37 6.57 37.30 0.25 0.62 16 22 O -0.38 -3.08 10.77 -35.23 -0.38 -3.46 16 23 C 0.06 0.42 6.57 37.20 0.24 0.66 16 24 C -0.13 -0.83 4.83 -26.60 -0.13 -0.96 16 25 H 0.08 0.58 7.02 -51.92 -0.36 0.22 16 26 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 27 H 0.08 0.40 7.24 -51.92 -0.38 0.02 16 28 H 0.08 0.74 5.03 -51.93 -0.26 0.48 16 29 H 0.07 0.67 6.94 -51.93 -0.36 0.31 16 30 H 0.40 3.28 6.90 -40.82 -0.28 3.00 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 34 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.08 0.40 6.89 -51.93 -0.36 0.04 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.37 6.71 -51.93 -0.35 0.02 16 44 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.43 6.50 -51.93 -0.34 0.09 16 46 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.08 0.51 7.10 -51.93 -0.37 0.14 16 LS Contribution 377.64 15.07 5.69 5.69 Total: -1.00 -34.02 377.64 -9.32 -43.33 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -8.09 Total: -2.00 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 0.13 Total: -12.65 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.44 Total: -34.42 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.29 Total: -12.95 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -1.81 SS G_CDS: -2.17 Total: -3.99 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.02 -9.32 -43.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588159206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.368 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds