Wall clock time and date at job start Tue Mar 31 2020 11:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81399 * 103.00217 * 2 1 4 4 C 1.53002 * 109.54320 * 297.67081 * 3 2 1 5 5 N 1.46501 * 109.46955 * 304.89475 * 4 3 2 6 6 C 1.34774 * 120.00360 * 178.24532 * 5 4 3 7 7 O 1.21281 * 119.99607 * 359.72224 * 6 5 4 8 8 C 1.50698 * 120.00664 * 179.97438 * 6 5 4 9 9 C 1.52991 * 109.47394 * 179.72174 * 8 6 5 10 10 C 1.52999 * 109.47370 * 180.02562 * 9 8 6 11 11 C 1.52996 * 109.47750 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47742 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99659 * 359.97438 * 12 11 10 14 14 C 1.37867 * 120.00287 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00050 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00148 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47261 * 59.99706 * 16 14 12 18 18 H 1.48502 * 109.47107 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46920 * 299.99668 * 16 14 12 20 20 C 1.53176 * 109.54261 * 57.84801 * 3 2 1 21 21 C 1.53283 * 109.06391 * 176.85552 * 20 3 2 22 22 O 1.42907 * 109.45584 * 302.44149 * 21 20 3 23 23 C 1.42900 * 114.09807 * 61.15897 * 22 21 20 24 24 C 1.53090 * 109.41739 * 298.84345 * 23 22 21 25 25 H 1.09004 * 109.47292 * 56.36458 * 1 2 3 26 26 H 1.08998 * 109.47009 * 176.36480 * 1 2 3 27 27 H 1.09000 * 109.46936 * 296.36984 * 1 2 3 28 28 H 1.08998 * 109.46898 * 184.89927 * 4 3 2 29 29 H 1.08999 * 109.47204 * 64.89326 * 4 3 2 30 30 H 0.97005 * 120.00118 * 358.24323 * 5 4 3 31 31 H 1.09003 * 109.46742 * 299.72647 * 8 6 5 32 32 H 1.09004 * 109.46812 * 59.72415 * 8 6 5 33 33 H 1.08995 * 109.47785 * 300.00193 * 9 8 6 34 34 H 1.09004 * 109.46944 * 60.00322 * 9 8 6 35 35 H 1.09005 * 109.47250 * 300.00462 * 10 9 8 36 36 H 1.09004 * 109.46846 * 60.00235 * 10 9 8 37 37 H 1.09005 * 109.46850 * 300.00374 * 11 10 9 38 38 H 1.08996 * 109.47102 * 59.99686 * 11 10 9 39 39 H 0.97001 * 120.00024 * 180.02562 * 15 14 12 40 40 H 1.09001 * 109.51852 * 296.84247 * 20 3 2 41 41 H 1.08990 * 109.52454 * 57.02995 * 20 3 2 42 42 H 1.08997 * 109.46030 * 182.44647 * 21 20 3 43 43 H 1.08998 * 109.46942 * 62.44079 * 21 20 3 44 44 H 1.09003 * 109.48380 * 178.85527 * 23 22 21 45 45 H 1.09006 * 109.48846 * 58.82853 * 23 22 21 46 46 H 1.09006 * 109.52131 * 297.69825 * 24 23 22 47 47 H 1.09005 * 109.57778 * 177.54704 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.6849 2.4168 -1.2770 5 7 2.2039 1.7004 -2.4447 6 6 1.8337 2.0758 -3.6851 7 8 1.0670 3.0036 -3.8343 8 6 2.3680 1.3393 -4.8863 9 6 1.7906 1.9567 -6.1615 10 6 2.3326 1.2084 -7.3811 11 6 1.7557 1.8262 -8.6564 12 6 2.2890 1.0888 -9.8576 13 1 2.9716 0.2625 -9.7247 14 6 1.9065 1.4698 -11.1262 15 7 1.0758 2.4764 -11.2880 16 14 2.5682 0.5562 -12.6152 17 1 2.1726 -0.8729 -12.5351 18 1 2.0081 1.1558 -13.8529 19 1 4.0493 0.6591 -12.6410 20 6 1.5889 2.4396 1.2221 21 6 2.0051 3.9145 1.2542 22 8 3.4310 4.0062 1.2811 23 6 4.0741 3.4349 0.1400 24 6 3.7425 1.9423 0.0632 25 1 -0.3634 0.5692 -0.8556 26 1 -0.3633 -1.0256 -0.0652 27 1 -0.3633 0.4565 0.9207 28 1 2.0051 3.4579 -1.3176 29 1 0.5958 2.3713 -1.2773 30 1 2.8140 0.9558 -2.3252 31 1 3.4552 1.4158 -4.9055 32 1 2.0786 0.2900 -4.8274 33 1 0.7035 1.8801 -6.1424 34 1 2.0800 3.0059 -6.2204 35 1 3.4198 1.2846 -7.4005 36 1 2.0428 0.1593 -7.3220 37 1 0.6685 1.7504 -8.6372 38 1 2.0457 2.8752 -8.7153 39 1 0.8063 2.7442 -12.1805 40 1 0.5033 2.3666 1.1563 41 1 1.9338 1.9443 2.1297 42 1 1.5935 4.3886 2.1451 43 1 1.6252 4.4186 0.3656 44 1 5.1529 3.5636 0.2282 45 1 3.7213 3.9325 -0.7634 46 1 4.1309 1.4369 0.9474 47 1 4.1960 1.5129 -0.8303 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588159206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:06 Heat of formation + Delta-G solvation = -135.507614 kcal Electronic energy + Delta-G solvation = -24300.142488 eV Core-core repulsion = 20800.102147 eV Total energy + Delta-G solvation = -3500.040341 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.31946 -40.25392 -36.94531 -36.46830 -34.61672 -34.18165 -32.32824 -31.53738 -29.83117 -28.49866 -26.98123 -25.45166 -24.73003 -23.91700 -21.79390 -21.32344 -20.39400 -18.42839 -18.27104 -17.96241 -17.16771 -17.02134 -16.93861 -16.51337 -16.37772 -15.97034 -15.77673 -15.27131 -15.17962 -14.81944 -14.51322 -14.49360 -14.27438 -13.94413 -13.62780 -13.58956 -13.42142 -13.26991 -12.94647 -12.78464 -12.71423 -12.40776 -12.36888 -12.15488 -12.12413 -12.02941 -11.41169 -11.37222 -11.35823 -11.18911 -11.14403 -10.78797 -10.54195 -10.38744 -10.10352 -8.74075 -8.18421 -6.30687 0.56087 1.40398 1.44464 1.47258 1.52285 1.63815 2.15004 2.42317 2.88505 3.14182 3.28283 3.37712 3.69007 3.85299 3.88660 4.06655 4.11563 4.16315 4.19354 4.20571 4.26315 4.31618 4.43744 4.51801 4.56573 4.65275 4.68425 4.69360 4.74303 4.84715 4.85209 4.88546 4.96833 4.98479 5.08453 5.19661 5.32796 5.33489 5.41637 5.57398 5.78562 5.88387 6.15879 6.25680 6.50838 6.87676 7.23839 7.38944 8.93671 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.024500 B = 0.002168 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.589644 B =12910.232099 C =13300.776734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.257 6.257 3 C -0.032 4.032 4 C 0.125 3.875 5 N -0.711 5.711 6 C 0.514 3.486 7 O -0.588 6.588 8 C -0.129 4.129 9 C -0.095 4.095 10 C -0.096 4.096 11 C 0.019 3.981 12 C -0.542 4.542 13 H 0.066 0.934 14 C -0.007 4.007 15 N -0.938 5.938 16 Si 0.969 3.031 17 H -0.264 1.264 18 H -0.285 1.285 19 H -0.264 1.264 20 C -0.138 4.138 21 C 0.056 3.944 22 O -0.393 6.393 23 C 0.060 3.940 24 C -0.127 4.127 25 H 0.069 0.931 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.416 0.584 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.042 0.958 34 H 0.043 0.957 35 H 0.061 0.939 36 H 0.060 0.940 37 H -0.016 1.016 38 H -0.015 1.015 39 H 0.263 0.737 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.051 0.949 44 H 0.114 0.886 45 H 0.049 0.951 46 H 0.089 0.911 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.300 -3.973 31.964 32.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.026 6.026 3 C -0.143 4.143 4 C -0.001 4.001 5 N -0.365 5.365 6 C 0.302 3.698 7 O -0.468 6.468 8 C -0.168 4.168 9 C -0.133 4.133 10 C -0.133 4.133 11 C -0.018 4.018 12 C -0.580 4.580 13 H 0.084 0.916 14 C -0.204 4.204 15 N -0.579 5.579 16 Si 0.793 3.207 17 H -0.189 1.189 18 H -0.211 1.211 19 H -0.189 1.189 20 C -0.178 4.178 21 C -0.023 4.023 22 O -0.312 6.312 23 C -0.018 4.018 24 C -0.166 4.166 25 H 0.088 0.912 26 H 0.128 0.872 27 H 0.111 0.889 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.255 0.745 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.002 0.998 38 H 0.003 0.997 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.133 0.867 43 H 0.069 0.931 44 H 0.132 0.868 45 H 0.067 0.933 46 H 0.108 0.892 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.434 -4.096 31.898 32.464 hybrid contribution -0.998 0.554 -1.306 1.734 sum 3.436 -3.542 30.592 30.987 Atomic orbital electron populations 1.23500 0.92803 1.07252 1.05470 1.86874 1.09149 1.09152 1.97469 1.23019 1.00280 0.94091 0.96863 1.21521 0.98479 0.96222 0.83868 1.45970 1.49816 1.36339 1.04371 1.21139 0.80077 0.83282 0.85327 1.90697 1.37451 1.31699 1.86922 1.21666 1.03462 1.01372 0.90326 1.21232 0.99596 0.99029 0.93440 1.21448 0.99884 0.98987 0.93004 1.19049 0.94496 0.94745 0.93509 1.21729 1.27662 1.16411 0.92234 0.91594 1.26091 0.95367 0.96055 1.02874 1.70126 1.35300 1.29089 1.23354 0.85442 0.78958 0.78832 0.77456 1.18920 1.21071 1.18879 1.22514 1.01633 0.96846 0.96774 1.22819 0.81042 0.95007 1.03392 1.87944 1.19612 1.80032 1.43639 1.22740 0.99222 0.91268 0.88549 1.22058 0.91303 0.98344 1.04852 0.91155 0.87178 0.88896 0.91036 0.92178 0.74535 0.86345 0.86570 0.93934 0.93797 0.92054 0.92150 0.99763 0.99698 0.92846 0.89447 0.88782 0.86724 0.93117 0.86758 0.93260 0.89233 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 9.87 113.37 1.12 -0.23 16 2 S -0.26 -3.40 20.23 -56.49 -1.14 -4.54 16 3 C -0.03 -0.39 0.43 -10.68 0.00 -0.40 16 4 C 0.13 2.11 3.78 86.38 0.33 2.43 16 5 N -0.71 -12.94 4.93 -463.06 -2.28 -15.23 16 6 C 0.51 13.55 7.83 87.66 0.69 14.24 16 7 O -0.59 -21.32 15.98 -3.03 -0.05 -21.37 16 8 C -0.13 -3.17 5.70 29.84 0.17 -3.00 16 9 C -0.09 -3.42 4.50 30.59 0.14 -3.29 16 10 C -0.10 -3.92 5.15 30.59 0.16 -3.77 16 11 C 0.02 1.06 4.97 29.85 0.15 1.20 16 12 C -0.54 -31.61 9.11 25.60 0.23 -31.37 16 13 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 14 C -0.01 -0.40 5.46 84.65 0.46 0.07 16 15 N -0.94 -59.32 13.29 21.44 0.28 -59.04 16 16 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 17 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 20 C -0.14 -1.40 4.68 30.75 0.14 -1.26 16 21 C 0.06 0.64 6.57 72.08 0.47 1.12 16 22 O -0.39 -6.00 10.77 -148.98 -1.60 -7.60 16 23 C 0.06 0.75 6.57 72.01 0.47 1.22 16 24 C -0.13 -1.40 4.83 30.68 0.15 -1.25 16 25 H 0.07 0.94 7.02 -2.39 -0.02 0.93 16 26 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.09 0.76 7.24 -2.39 -0.02 0.74 16 28 H 0.07 1.35 5.03 -2.39 -0.01 1.34 16 29 H 0.06 1.15 6.94 -2.39 -0.02 1.13 16 30 H 0.42 5.75 6.90 -92.70 -0.64 5.11 16 31 H 0.12 2.30 8.14 -2.39 -0.02 2.29 16 32 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 34 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 35 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 36 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 37 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 38 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 39 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 40 H 0.09 0.74 6.89 -2.39 -0.02 0.72 16 41 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.05 0.64 6.71 -2.39 -0.02 0.63 16 44 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.05 0.70 6.50 -2.38 -0.02 0.68 16 46 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.09 0.89 7.10 -2.38 -0.02 0.87 16 Total: -1.00 -75.31 377.64 2.22 -73.09 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.31 Total: 12.02 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 4.68 Total: -24.28 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -2.00 Total: -74.26 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -1.65 Total: -28.97 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -1.14 Total: -4.54 kcal Total: -75.31 2.22 -73.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588159206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.413 kcal (2) G-P(sol) polarization free energy of solvation -75.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds