Wall clock time and date at job start Tue Mar 31 2020 10:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39867 * 125.46216 * 2 1 4 4 C 1.30240 * 110.08912 * 179.97438 * 3 2 1 5 5 C 1.45934 * 107.78259 * 0.02562 * 4 3 2 6 6 C 1.39937 * 134.03010 * 179.97438 * 5 4 3 7 7 C 1.36463 * 119.63744 * 179.97438 * 6 5 4 8 8 C 1.38965 * 120.62804 * 359.72768 * 7 6 5 9 9 C 1.50698 * 119.59727 * 180.27686 * 8 7 6 10 10 N 1.46494 * 109.47604 * 270.27822 * 9 8 7 11 11 C 1.34775 * 120.00321 * 179.97438 * 10 9 8 12 12 O 1.21285 * 119.99745 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00115 * 180.02562 * 11 10 9 14 14 C 1.53000 * 109.46915 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46757 * 179.97438 * 14 13 11 16 16 C 1.53008 * 109.47129 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46980 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00492 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99361 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00419 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99703 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47163 * 90.00034 * 21 19 17 23 23 H 1.48500 * 109.47098 * 210.00029 * 21 19 17 24 24 H 1.48497 * 109.47404 * 330.00058 * 21 19 17 25 25 C 1.36594 * 120.81282 * 0.56357 * 8 7 6 26 26 C 1.37042 * 125.45901 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46859 * 270.02506 * 1 2 3 28 28 H 1.09000 * 109.46912 * 30.02290 * 1 2 3 29 29 H 1.08994 * 109.47328 * 150.02738 * 1 2 3 30 30 H 1.08005 * 126.11083 * 179.97438 * 4 3 2 31 31 H 1.08005 * 120.18696 * 0.02562 * 6 5 4 32 32 H 1.08006 * 119.68772 * 180.02562 * 7 6 5 33 33 H 1.08999 * 109.46782 * 30.28262 * 9 8 7 34 34 H 1.09007 * 109.46782 * 150.27401 * 9 8 7 35 35 H 0.97005 * 119.99535 * 359.97438 * 10 9 8 36 36 H 1.09007 * 109.46640 * 299.99684 * 13 11 10 37 37 H 1.08992 * 109.47335 * 59.99718 * 13 11 10 38 38 H 1.08994 * 109.47079 * 299.99610 * 14 13 11 39 39 H 1.09002 * 109.47144 * 60.00010 * 14 13 11 40 40 H 1.08999 * 109.47607 * 299.99914 * 15 14 13 41 41 H 1.09002 * 109.47125 * 60.00195 * 15 14 13 42 42 H 1.08999 * 109.46976 * 300.00509 * 16 15 14 43 43 H 1.09002 * 109.46788 * 60.00197 * 16 15 14 44 44 H 0.97007 * 120.00158 * 179.97438 * 20 19 17 45 45 H 1.08002 * 120.07853 * 179.72159 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2765 1.1392 0.0000 4 6 3.5323 0.7939 0.0005 5 6 3.5936 -0.6641 0.0003 6 6 4.6397 -1.5936 0.0002 7 6 4.3564 -2.9285 0.0005 8 6 3.0397 -3.3727 0.0066 9 6 2.7534 -4.8523 0.0132 10 7 2.6626 -5.3383 -1.3658 11 6 2.4117 -6.6405 -1.6063 12 8 2.2607 -7.4098 -0.6809 13 6 2.3188 -7.1405 -3.0249 14 6 2.0280 -8.6426 -3.0181 15 6 1.9331 -9.1501 -4.4584 16 6 1.6429 -10.6524 -4.4517 17 6 1.5488 -11.1521 -5.8703 18 1 1.6822 -10.4668 -6.6942 19 6 1.2925 -12.4843 -6.1162 20 7 1.1296 -13.3188 -5.1129 21 14 1.1751 -13.1037 -7.8746 22 1 2.5188 -13.5327 -8.3391 23 1 0.2403 -14.2561 -7.9321 24 1 0.6729 -12.0148 -8.7506 25 6 2.0017 -2.4849 0.0009 26 6 2.2600 -1.1162 0.0005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 4.3773 1.4665 0.0003 31 1 5.6658 -1.2564 0.0007 32 1 5.1632 -3.6465 0.0009 33 1 3.5574 -5.3756 0.5307 34 1 1.8099 -5.0375 0.5267 35 1 2.7830 -4.7228 -2.1058 36 1 1.5146 -6.6174 -3.5425 37 1 3.2623 -6.9550 -3.5380 38 1 2.8318 -9.1659 -2.5003 39 1 1.0843 -8.8277 -2.5051 40 1 1.1291 -8.6267 -4.9758 41 1 2.8767 -8.9650 -4.9718 42 1 2.4472 -11.1754 -3.9343 43 1 0.6995 -10.8379 -3.9382 44 1 0.9489 -14.2560 -5.2859 45 1 0.9828 -2.8433 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589714493.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:40 Heat of formation + Delta-G solvation = 27.434302 kcal Electronic energy + Delta-G solvation = -24066.917165 eV Core-core repulsion = 20470.791315 eV Total energy + Delta-G solvation = -3596.125850 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.73574 -39.75130 -38.08666 -35.08297 -34.64249 -33.87515 -32.61523 -31.21640 -30.72495 -29.61195 -27.04155 -26.70878 -25.15458 -23.15430 -22.35674 -21.70156 -21.05056 -20.28815 -19.94280 -17.61809 -17.34460 -16.71118 -16.30376 -16.04855 -15.93347 -15.75413 -15.32037 -14.90150 -14.44609 -14.35308 -14.18585 -13.76918 -13.60298 -13.39587 -13.14223 -12.87859 -12.62601 -12.28560 -12.07507 -12.01723 -11.66844 -11.58746 -11.48930 -11.24706 -10.96830 -10.52050 -10.51791 -10.49031 -10.38984 -9.89255 -9.59314 -9.24302 -9.20087 -9.05092 -8.93342 -8.34407 -8.29008 -5.93774 -3.96210 0.40372 1.03718 1.91427 2.00692 2.73271 3.05170 3.34933 3.40923 3.44101 3.50498 3.96534 4.00626 4.27092 4.31592 4.50147 4.68683 4.73823 4.77578 4.82740 4.90723 4.98461 5.09644 5.20525 5.26694 5.35385 5.39878 5.41933 5.47914 5.55763 5.87123 5.89205 6.00020 6.13718 6.16421 6.25909 6.33097 6.34685 6.54636 6.57158 6.86385 7.04388 7.14401 7.22115 7.42905 7.75903 7.92117 8.07797 8.26044 8.49646 9.11535 9.67312 11.17476 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.026944 B = 0.001704 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.936710 B =16428.891869 C =16700.589557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.409 5.409 3 N -0.253 5.253 4 C 0.072 3.928 5 C -0.179 4.179 6 C -0.039 4.039 7 C -0.142 4.142 8 C -0.053 4.053 9 C 0.159 3.841 10 N -0.735 5.735 11 C 0.512 3.488 12 O -0.535 6.535 13 C -0.138 4.138 14 C -0.103 4.103 15 C -0.111 4.111 16 C 0.019 3.981 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.121 4.121 26 C 0.126 3.874 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.198 0.802 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.401 0.599 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.260 0.740 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.606 31.199 12.481 33.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.198 5.198 3 N -0.065 5.065 4 C -0.125 4.125 5 C -0.187 4.187 6 C -0.059 4.059 7 C -0.162 4.162 8 C -0.056 4.056 9 C 0.035 3.965 10 N -0.389 5.389 11 C 0.300 3.700 12 O -0.410 6.410 13 C -0.178 4.178 14 C -0.141 4.141 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.143 4.143 26 C 0.011 3.989 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.214 0.786 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.235 0.765 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.403 31.438 13.208 34.269 hybrid contribution 0.416 -0.639 -1.255 1.469 sum 3.819 30.799 11.953 33.257 Atomic orbital electron populations 1.21791 0.73903 1.04433 1.03177 1.48199 1.05966 1.01014 1.64587 1.76604 1.02778 1.08999 1.18074 1.25114 0.94699 0.93104 0.99606 1.19980 0.93077 0.93442 1.12167 1.20349 0.97903 0.91769 0.95922 1.20638 0.95991 0.95612 1.03997 1.19458 0.93015 0.94676 0.98471 1.20185 1.02900 0.88762 0.84607 1.46146 1.74793 1.10022 1.07896 1.21132 0.75183 0.81129 0.92564 1.90715 1.48702 1.55245 1.46367 1.21795 1.03877 0.99946 0.92190 1.21453 1.02514 0.91004 0.99163 1.21654 1.00065 1.00004 0.93095 1.19102 0.97009 0.88885 0.96781 1.21287 1.48259 0.93640 0.92664 0.92762 1.25043 0.95546 0.97106 0.96901 1.69974 1.49194 1.03818 1.30448 0.86614 0.77840 0.78422 0.85210 1.20718 1.21269 1.19947 1.19719 0.99850 0.88554 1.06215 1.18766 0.90815 0.89435 0.99866 0.91104 0.89334 0.89603 0.78560 0.85090 0.85156 0.90252 0.90610 0.76475 0.89174 0.89088 0.91773 0.91820 0.93502 0.93475 0.96567 0.96588 0.93064 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.56 11.40 59.85 0.68 1.24 16 2 N -0.41 -3.54 4.05 -65.47 -0.27 -3.80 16 3 N -0.25 -2.35 12.40 31.87 0.40 -1.96 16 4 C 0.07 0.53 12.28 -15.15 -0.19 0.34 16 5 C -0.18 -1.45 6.37 -105.21 -0.67 -2.12 16 6 C -0.04 -0.26 10.07 -39.59 -0.40 -0.65 16 7 C -0.14 -0.98 9.61 -39.95 -0.38 -1.36 16 8 C -0.05 -0.40 5.22 -104.95 -0.55 -0.95 16 9 C 0.16 1.40 5.77 -5.20 -0.03 1.37 16 10 N -0.73 -7.03 5.55 -61.47 -0.34 -7.37 16 11 C 0.51 6.89 7.83 -10.99 -0.09 6.80 16 12 O -0.53 -9.50 15.98 5.55 0.09 -9.42 16 13 C -0.14 -1.80 5.70 -27.88 -0.16 -1.96 16 14 C -0.10 -1.84 4.50 -26.73 -0.12 -1.96 16 15 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 16 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 17 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 18 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -27.57 13.29 55.43 0.74 -26.83 16 21 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 C -0.12 -0.94 9.58 -39.79 -0.38 -1.32 16 26 C 0.13 1.11 6.87 -84.17 -0.58 0.53 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.20 0.67 8.06 -52.48 -0.42 0.25 16 31 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 32 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 33 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 35 H 0.40 2.93 8.46 -40.82 -0.35 2.59 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 39 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 384.37 15.07 5.79 5.79 Total: -1.00 -36.40 384.37 -9.22 -45.63 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -7.06 Total: -3.04 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -3.55 Total: -15.94 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.53 Total: -39.96 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.40 -9.22 -45.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589714493.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.061 kcal (2) G-P(sol) polarization free energy of solvation -36.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds