Wall clock time and date at job start Tue Mar 31 2020 10:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39867 * 125.46216 * 2 1 4 4 C 1.30240 * 110.08912 * 179.97438 * 3 2 1 5 5 C 1.45934 * 107.78259 * 0.02562 * 4 3 2 6 6 C 1.39937 * 134.03010 * 179.97438 * 5 4 3 7 7 C 1.36463 * 119.63744 * 179.97438 * 6 5 4 8 8 C 1.38965 * 120.62804 * 359.72768 * 7 6 5 9 9 C 1.50698 * 119.59727 * 180.27686 * 8 7 6 10 10 N 1.46494 * 109.47604 * 270.27822 * 9 8 7 11 11 C 1.34775 * 120.00321 * 179.97438 * 10 9 8 12 12 O 1.21285 * 119.99745 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00115 * 180.02562 * 11 10 9 14 14 C 1.53000 * 109.46915 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46757 * 179.97438 * 14 13 11 16 16 C 1.53008 * 109.47129 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46980 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00492 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99361 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00419 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99703 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47163 * 90.00034 * 21 19 17 23 23 H 1.48500 * 109.47098 * 210.00029 * 21 19 17 24 24 H 1.48497 * 109.47404 * 330.00058 * 21 19 17 25 25 C 1.36594 * 120.81282 * 0.56357 * 8 7 6 26 26 C 1.37042 * 125.45901 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46859 * 270.02506 * 1 2 3 28 28 H 1.09000 * 109.46912 * 30.02290 * 1 2 3 29 29 H 1.08994 * 109.47328 * 150.02738 * 1 2 3 30 30 H 1.08005 * 126.11083 * 179.97438 * 4 3 2 31 31 H 1.08005 * 120.18696 * 0.02562 * 6 5 4 32 32 H 1.08006 * 119.68772 * 180.02562 * 7 6 5 33 33 H 1.08999 * 109.46782 * 30.28262 * 9 8 7 34 34 H 1.09007 * 109.46782 * 150.27401 * 9 8 7 35 35 H 0.97005 * 119.99535 * 359.97438 * 10 9 8 36 36 H 1.09007 * 109.46640 * 299.99684 * 13 11 10 37 37 H 1.08992 * 109.47335 * 59.99718 * 13 11 10 38 38 H 1.08994 * 109.47079 * 299.99610 * 14 13 11 39 39 H 1.09002 * 109.47144 * 60.00010 * 14 13 11 40 40 H 1.08999 * 109.47607 * 299.99914 * 15 14 13 41 41 H 1.09002 * 109.47125 * 60.00195 * 15 14 13 42 42 H 1.08999 * 109.46976 * 300.00509 * 16 15 14 43 43 H 1.09002 * 109.46788 * 60.00197 * 16 15 14 44 44 H 0.97007 * 120.00158 * 179.97438 * 20 19 17 45 45 H 1.08002 * 120.07853 * 179.72159 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2765 1.1392 0.0000 4 6 3.5323 0.7939 0.0005 5 6 3.5936 -0.6641 0.0003 6 6 4.6397 -1.5936 0.0002 7 6 4.3564 -2.9285 0.0005 8 6 3.0397 -3.3727 0.0066 9 6 2.7534 -4.8523 0.0132 10 7 2.6626 -5.3383 -1.3658 11 6 2.4117 -6.6405 -1.6063 12 8 2.2607 -7.4098 -0.6809 13 6 2.3188 -7.1405 -3.0249 14 6 2.0280 -8.6426 -3.0181 15 6 1.9331 -9.1501 -4.4584 16 6 1.6429 -10.6524 -4.4517 17 6 1.5488 -11.1521 -5.8703 18 1 1.6822 -10.4668 -6.6942 19 6 1.2925 -12.4843 -6.1162 20 7 1.1296 -13.3188 -5.1129 21 14 1.1751 -13.1037 -7.8746 22 1 2.5188 -13.5327 -8.3391 23 1 0.2403 -14.2561 -7.9321 24 1 0.6729 -12.0148 -8.7506 25 6 2.0017 -2.4849 0.0009 26 6 2.2600 -1.1162 0.0005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 4.3773 1.4665 0.0003 31 1 5.6658 -1.2564 0.0007 32 1 5.1632 -3.6465 0.0009 33 1 3.5574 -5.3756 0.5307 34 1 1.8099 -5.0375 0.5267 35 1 2.7830 -4.7228 -2.1058 36 1 1.5146 -6.6174 -3.5425 37 1 3.2623 -6.9550 -3.5380 38 1 2.8318 -9.1659 -2.5003 39 1 1.0843 -8.8277 -2.5051 40 1 1.1291 -8.6267 -4.9758 41 1 2.8767 -8.9650 -4.9718 42 1 2.4472 -11.1754 -3.9343 43 1 0.6995 -10.8379 -3.9382 44 1 0.9489 -14.2560 -5.2859 45 1 0.9828 -2.8433 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589714493.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:39 Heat of formation + Delta-G solvation = 4.281330 kcal Electronic energy + Delta-G solvation = -24067.921153 eV Core-core repulsion = 20470.791315 eV Total energy + Delta-G solvation = -3597.129838 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.27769 -40.77642 -38.73710 -36.64982 -35.63471 -34.59010 -34.41754 -32.10944 -31.34658 -31.02052 -27.99255 -27.45264 -26.55859 -24.11602 -23.57575 -22.34677 -21.77849 -21.60809 -21.23400 -18.41529 -18.26849 -17.97307 -17.52933 -17.04805 -16.85629 -16.48800 -16.45892 -16.10113 -15.52100 -15.32580 -14.93088 -14.70092 -14.52976 -14.27657 -13.99339 -13.91264 -13.56638 -13.52766 -13.34342 -13.27764 -12.83615 -12.79864 -12.62347 -12.33022 -12.12985 -12.10031 -12.03899 -11.79801 -11.35165 -11.33870 -11.15599 -11.04397 -10.80964 -10.53675 -10.10768 -9.65534 -8.87122 -8.17427 -6.29487 -0.15475 0.49305 1.41100 1.43340 1.44014 1.46135 1.54365 1.68593 2.26873 2.43032 2.85460 3.15150 3.42087 3.53300 3.74752 3.79235 3.90899 4.10193 4.16550 4.20814 4.24258 4.36723 4.37751 4.52171 4.62373 4.63967 4.69457 4.72090 4.76495 4.82758 4.88386 4.91471 5.02857 5.22617 5.34817 5.35655 5.37212 5.45279 5.50222 5.58760 5.59521 5.80455 5.84988 5.89919 6.02788 6.26947 6.56988 6.60317 6.89034 7.29151 7.39985 8.94645 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.026944 B = 0.001704 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.936710 B =16428.891869 C =16700.589557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.420 5.420 3 N -0.286 5.286 4 C 0.077 3.923 5 C -0.195 4.195 6 C -0.034 4.034 7 C -0.148 4.148 8 C -0.051 4.051 9 C 0.162 3.838 10 N -0.714 5.714 11 C 0.513 3.487 12 O -0.587 6.587 13 C -0.128 4.128 14 C -0.096 4.096 15 C -0.096 4.096 16 C 0.018 3.982 17 C -0.542 4.542 18 H 0.066 0.934 19 C -0.007 4.007 20 N -0.937 5.937 21 Si 0.969 3.031 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.260 1.260 25 C -0.126 4.126 26 C 0.107 3.893 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.231 0.769 31 H 0.159 0.841 32 H 0.144 0.856 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.416 0.584 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.060 0.940 41 H 0.061 0.939 42 H -0.015 1.015 43 H -0.015 1.015 44 H 0.262 0.738 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.624 33.198 10.819 35.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.209 5.209 3 N -0.098 5.098 4 C -0.120 4.120 5 C -0.203 4.203 6 C -0.054 4.054 7 C -0.168 4.168 8 C -0.054 4.054 9 C 0.038 3.962 10 N -0.367 5.367 11 C 0.302 3.698 12 O -0.466 6.466 13 C -0.168 4.168 14 C -0.134 4.134 15 C -0.134 4.134 16 C -0.020 4.020 17 C -0.580 4.580 18 H 0.084 0.916 19 C -0.204 4.204 20 N -0.577 5.577 21 Si 0.793 3.207 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.184 1.184 25 C -0.149 4.149 26 C -0.008 4.008 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.247 0.753 31 H 0.176 0.824 32 H 0.161 0.839 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.253 0.747 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.004 0.996 43 H 0.003 0.997 44 H 0.071 0.929 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.423 33.506 11.528 35.709 hybrid contribution 0.115 -1.230 -0.672 1.406 sum 4.538 32.276 10.856 34.354 Atomic orbital electron populations 1.21997 0.72697 1.05331 1.03919 1.48469 1.06873 1.00822 1.64752 1.76560 1.03778 1.09884 1.19560 1.25722 0.95019 0.93370 0.97864 1.20330 0.93314 0.94166 1.12516 1.20641 0.98905 0.91287 0.94530 1.20826 0.95919 0.96197 1.03843 1.19324 0.93515 0.93572 0.98990 1.20163 1.02484 0.89632 0.83875 1.45940 1.72860 1.08934 1.08946 1.21156 0.74707 0.81860 0.92110 1.90707 1.51417 1.56810 1.47709 1.21670 1.06304 0.96209 0.92599 1.21247 1.00842 0.94641 0.96710 1.21455 1.01085 0.95636 0.95201 1.19071 0.94311 0.93121 0.95458 1.21761 1.48131 0.94333 0.93743 0.91600 1.26091 0.94926 0.97435 1.01987 1.70132 1.50104 1.04263 1.33241 0.85386 0.78178 0.77982 0.79110 1.19714 1.20964 1.18373 1.19790 1.00312 0.88384 1.06407 1.19031 0.91547 0.89815 1.00387 0.90446 0.88791 0.88383 0.75318 0.82387 0.83867 0.90588 0.91294 0.74727 0.86490 0.86312 0.93757 0.93858 0.92153 0.92064 0.99639 0.99690 0.92885 0.84858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.99 11.40 127.77 1.46 2.45 16 2 N -0.42 -7.00 4.05 -361.04 -1.46 -8.47 16 3 N -0.29 -5.09 12.40 -53.08 -0.66 -5.74 16 4 C 0.08 1.00 12.28 86.92 1.07 2.07 16 5 C -0.20 -2.84 6.37 -20.24 -0.13 -2.97 16 6 C -0.03 -0.36 10.07 22.27 0.22 -0.13 16 7 C -0.15 -1.72 9.61 22.03 0.21 -1.50 16 8 C -0.05 -0.70 5.22 -20.08 -0.10 -0.80 16 9 C 0.16 2.68 5.77 85.63 0.49 3.18 16 10 N -0.71 -12.32 5.55 -466.79 -2.59 -14.91 16 11 C 0.51 13.20 7.83 87.66 0.69 13.89 16 12 O -0.59 -21.11 15.98 -3.04 -0.05 -21.16 16 13 C -0.13 -3.05 5.70 29.85 0.17 -2.88 16 14 C -0.10 -3.43 4.50 30.59 0.14 -3.29 16 15 C -0.10 -3.91 5.15 30.60 0.16 -3.76 16 16 C 0.02 0.96 4.97 29.85 0.15 1.11 16 17 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 18 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 19 C -0.01 -0.43 5.46 84.66 0.46 0.04 16 20 N -0.94 -59.03 13.29 21.45 0.28 -58.74 16 21 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 24 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 25 C -0.13 -1.83 9.58 22.14 0.21 -1.62 16 26 C 0.11 1.78 6.87 39.21 0.27 2.05 16 27 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.23 0.98 8.06 -2.91 -0.02 0.96 16 31 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 32 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 33 H 0.08 1.36 8.08 -2.39 -0.02 1.34 16 34 H 0.07 1.27 8.07 -2.38 -0.02 1.25 16 35 H 0.42 4.89 8.46 -92.70 -0.78 4.11 16 36 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 37 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 39 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 42 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 43 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 44 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 45 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -81.22 384.37 3.45 -77.77 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.20 Total: 7.81 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: 5.70 Total: -23.44 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -4.42 Total: -87.86 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.05 Total: -21.16 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -81.22 3.45 -77.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589714493.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.050 kcal (2) G-P(sol) polarization free energy of solvation -81.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds