Wall clock time and date at job start Tue Mar 31 2020 11:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46894 * 111.00013 * 2 1 4 4 C 1.46897 * 110.99994 * 123.95619 * 2 1 3 5 5 C 1.53001 * 109.46972 * 169.99919 * 4 2 1 6 6 C 1.53006 * 109.46995 * 180.02562 * 5 4 2 7 7 N 1.46494 * 109.46996 * 184.94602 * 6 5 4 8 8 C 1.34777 * 120.00128 * 184.95326 * 7 6 5 9 9 O 1.21673 * 119.99844 * 4.57098 * 8 7 6 10 10 C 1.46884 * 120.00127 * 184.56316 * 8 7 6 11 11 C 1.36133 * 125.43568 * 185.56017 * 10 8 7 12 12 C 1.41701 * 107.74745 * 180.24411 * 11 10 8 13 13 C 1.40019 * 133.34993 * 179.81279 * 12 11 10 14 14 C 1.36583 * 119.82828 * 179.97438 * 13 12 11 15 15 C 1.38854 * 120.60000 * 0.02562 * 14 13 12 16 16 C 1.37841 * 120.63439 * 359.97438 * 15 14 13 17 17 C 1.39086 * 119.81337 * 0.02562 * 16 15 14 18 18 N 1.37837 * 133.16019 * 180.02562 * 17 16 15 19 19 C 1.36894 * 125.62009 * 359.94058 * 18 17 16 20 20 H 1.07997 * 119.99844 * 127.01394 * 19 18 17 21 21 C 1.39011 * 120.00347 * 307.00970 * 19 18 17 22 22 N 1.31352 * 119.99771 * 3.44197 * 21 19 18 23 23 Si 1.86793 * 120.00165 * 183.16768 * 21 19 18 24 24 H 1.48501 * 109.47283 * 275.27410 * 23 21 19 25 25 H 1.48503 * 109.47353 * 35.27420 * 23 21 19 26 26 H 1.48505 * 109.47178 * 155.27674 * 23 21 19 27 27 H 1.08994 * 109.46799 * 296.04498 * 1 2 3 28 28 H 1.09004 * 109.47085 * 56.04196 * 1 2 3 29 29 H 1.08992 * 109.47177 * 176.04298 * 1 2 3 30 30 H 1.09000 * 109.47468 * 183.95664 * 3 2 1 31 31 H 1.09003 * 109.47610 * 303.95293 * 3 2 1 32 32 H 1.09005 * 109.47294 * 63.95663 * 3 2 1 33 33 H 1.09005 * 109.46833 * 50.00024 * 4 2 1 34 34 H 1.08992 * 109.47229 * 289.99684 * 4 2 1 35 35 H 1.08999 * 109.47455 * 59.99952 * 5 4 2 36 36 H 1.09001 * 109.46867 * 299.99826 * 5 4 2 37 37 H 1.09006 * 109.46739 * 64.94749 * 6 5 4 38 38 H 1.08995 * 109.47316 * 304.95101 * 6 5 4 39 39 H 0.97000 * 120.00326 * 4.96092 * 7 6 5 40 40 H 1.07995 * 126.12347 * 0.02562 * 11 10 8 41 41 H 1.07993 * 120.08514 * 359.95222 * 13 12 11 42 42 H 1.07994 * 119.69414 * 180.02562 * 14 13 12 43 43 H 1.08003 * 119.67946 * 180.02562 * 15 14 13 44 44 H 1.08006 * 120.09148 * 180.02562 * 16 15 14 45 45 H 0.97003 * 119.99680 * 354.16943 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9554 0.9702 6 6 4.0527 -1.7538 2.1547 7 7 5.5121 -1.8340 2.0560 8 6 6.2076 -2.5770 2.9396 9 8 5.6190 -3.2470 3.7673 10 6 7.6759 -2.5780 2.9033 11 6 8.4838 -3.3638 3.6669 12 6 9.8262 -3.0559 3.3336 13 6 11.0625 -3.5326 3.7862 14 6 12.2184 -3.0294 3.2606 15 6 12.1800 -2.0471 2.2799 16 6 10.9752 -1.5621 1.8183 17 6 9.7848 -2.0591 2.3384 18 7 8.4580 -1.7826 2.0872 19 6 7.9917 -0.8676 1.1820 20 1 7.2686 -1.1651 0.4371 21 6 8.4490 0.4446 1.2217 22 7 9.3779 0.7905 2.0835 23 14 7.7478 1.7140 0.0444 24 1 8.4742 1.6442 -1.2489 25 1 6.3065 1.4367 -0.1817 26 1 7.9052 3.0705 0.6279 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5741 -0.8524 29 1 -0.3633 -1.0251 -0.0709 30 1 3.0828 1.3432 -0.0709 31 1 1.5899 1.9164 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 1.5089 -1.7407 1.1755 34 1 1.7976 -0.2249 2.0627 35 1 3.9910 0.0193 0.9322 36 1 3.7023 -1.4966 0.0450 37 1 3.6318 -2.7592 2.1411 38 1 3.7782 -1.2576 3.0856 39 1 5.9780 -1.3523 1.3547 40 1 8.1597 -4.0891 4.3985 41 1 11.1020 -4.2958 4.5492 42 1 13.1707 -3.3989 3.6110 43 1 13.1032 -1.6601 1.8743 44 1 10.9556 -0.7983 1.0550 45 1 9.6845 0.1537 2.7479 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609629712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:18 Heat of formation + Delta-G solvation = 2.938561 kcal Electronic energy + Delta-G solvation = -26238.884057 eV Core-core repulsion = 22641.695992 eV Total energy + Delta-G solvation = -3597.188065 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.46545 -40.36685 -38.72285 -37.77909 -36.34655 -35.49660 -32.77966 -32.30411 -30.80162 -29.85565 -28.49382 -27.37628 -26.63982 -24.80707 -23.28178 -22.73466 -22.08438 -21.85799 -21.06316 -20.07088 -18.19003 -17.50594 -17.31959 -17.03901 -16.62840 -16.37442 -16.19341 -15.89932 -15.65640 -15.51263 -15.30809 -14.98511 -14.83683 -14.71855 -14.16558 -13.84044 -13.56816 -13.50224 -13.31193 -12.96430 -12.73416 -12.66435 -12.49134 -12.39917 -12.35526 -12.15678 -12.05930 -11.96414 -11.72466 -11.58313 -11.22293 -10.99172 -10.55441 -10.13428 -9.43354 -9.34343 -8.81114 -8.42586 -6.73641 -0.03548 0.93093 1.23221 1.48511 1.55355 1.72956 2.13821 2.25241 2.43493 2.67964 2.81592 3.02132 3.14791 3.86223 3.88174 4.01631 4.06335 4.13105 4.29859 4.31351 4.39927 4.43667 4.49639 4.53630 4.60684 4.63969 4.68664 4.73140 4.76061 4.83962 5.00081 5.01845 5.04273 5.09609 5.12859 5.16502 5.25262 5.41805 5.43946 5.68867 5.77333 5.80000 5.99617 6.02140 6.05541 6.08297 6.41326 6.53133 6.84241 7.16962 7.28797 8.24152 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015928 B = 0.003970 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.496893 B = 7050.582787 C = 8612.799333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.562 5.562 3 C 0.016 3.984 4 C 0.064 3.936 5 C -0.119 4.119 6 C 0.119 3.881 7 N -0.718 5.718 8 C 0.589 3.411 9 O -0.580 6.580 10 C -0.038 4.038 11 C -0.170 4.170 12 C -0.151 4.151 13 C -0.082 4.082 14 C -0.151 4.151 15 C -0.117 4.117 16 C -0.116 4.116 17 C 0.052 3.948 18 N -0.293 5.293 19 C -0.456 4.456 20 H 0.107 0.893 21 C -0.007 4.007 22 N -0.868 5.868 23 Si 1.122 2.878 24 H -0.264 1.264 25 H -0.244 1.244 26 H -0.281 1.281 27 H 0.028 0.972 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.028 0.972 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.415 0.585 40 H 0.147 0.853 41 H 0.141 0.859 42 H 0.154 0.846 43 H 0.143 0.857 44 H 0.099 0.901 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.834 0.588 -4.566 9.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.286 5.286 3 C -0.132 4.132 4 C -0.065 4.065 5 C -0.157 4.157 6 C -0.005 4.005 7 N -0.375 5.375 8 C 0.378 3.622 9 O -0.462 6.462 10 C -0.152 4.152 11 C -0.198 4.198 12 C -0.156 4.156 13 C -0.101 4.101 14 C -0.170 4.170 15 C -0.137 4.137 16 C -0.136 4.136 17 C -0.062 4.062 18 N 0.040 4.960 19 C -0.583 4.583 20 H 0.124 0.876 21 C -0.216 4.216 22 N -0.498 5.498 23 Si 0.938 3.062 24 H -0.189 1.189 25 H -0.167 1.167 26 H -0.206 1.206 27 H 0.047 0.953 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.047 0.953 33 H 0.105 0.895 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.260 0.740 40 H 0.165 0.835 41 H 0.158 0.842 42 H 0.171 0.829 43 H 0.161 0.839 44 H 0.117 0.883 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.171 1.752 -5.161 10.668 hybrid contribution -0.023 -0.914 1.194 1.504 sum -9.193 0.838 -3.967 10.048 Atomic orbital electron populations 1.22430 0.85904 1.02949 1.01069 1.61954 1.09139 1.14433 1.43053 1.22507 1.01036 0.88520 1.01117 1.21963 0.93675 0.99153 0.91675 1.21698 0.96150 1.00422 0.97458 1.21387 0.78967 1.00973 0.99166 1.46672 1.08382 1.49446 1.33014 1.17221 0.85212 0.78925 0.80887 1.90682 1.70595 1.44858 1.40070 1.20702 0.91480 1.03154 0.99869 1.20747 0.90973 1.04316 1.03728 1.18448 0.94409 1.00990 1.01753 1.20586 0.89961 0.99760 0.99749 1.20843 0.98561 0.98868 0.98729 1.21103 0.96271 0.98074 0.98280 1.20245 0.90618 1.00898 1.01828 1.19092 0.86399 0.99257 1.01405 1.40255 1.02470 1.27116 1.26127 1.20679 1.32269 0.91407 1.13942 0.87585 1.28349 0.93444 0.99120 1.00641 1.70699 1.22982 1.40671 1.15424 0.82895 0.77518 0.72615 0.73193 1.18855 1.16695 1.20578 0.95348 0.90351 0.90719 0.91749 0.90109 0.95344 0.89480 0.94269 0.91432 0.90378 0.91184 0.92292 0.74005 0.83487 0.84164 0.82874 0.83930 0.88257 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.57 127.69 1.22 1.59 16 2 N -0.56 -11.25 5.02 -948.87 -4.76 -16.01 16 3 C 0.02 0.31 9.32 127.69 1.19 1.50 16 4 C 0.06 1.33 4.96 86.30 0.43 1.75 16 5 C -0.12 -2.99 5.26 30.60 0.16 -2.83 16 6 C 0.12 3.68 5.70 86.38 0.49 4.18 16 7 N -0.72 -28.40 5.44 -466.88 -2.54 -30.94 16 8 C 0.59 27.53 7.77 86.51 0.67 28.20 16 9 O -0.58 -28.51 16.83 -4.26 -0.07 -28.58 16 10 C -0.04 -1.91 6.77 39.91 0.27 -1.64 16 11 C -0.17 -8.04 10.55 22.64 0.24 -7.80 16 12 C -0.15 -6.98 6.16 -21.34 -0.13 -7.11 16 13 C -0.08 -3.06 10.06 22.31 0.22 -2.84 16 14 C -0.15 -5.08 9.97 22.03 0.22 -4.86 16 15 C -0.12 -4.37 10.02 22.32 0.22 -4.15 16 16 C -0.12 -5.35 8.24 22.38 0.18 -5.16 16 17 C 0.05 2.59 5.24 39.06 0.20 2.80 16 18 N -0.29 -15.01 2.64 -331.34 -0.87 -15.89 16 19 C -0.46 -22.33 7.76 84.09 0.65 -21.68 16 20 H 0.11 4.82 6.20 -2.91 -0.02 4.81 16 21 C -0.01 -0.34 5.16 84.95 0.44 0.10 16 22 N -0.87 -46.77 12.36 21.67 0.27 -46.50 16 23 Si 1.12 40.60 29.92 68.60 2.05 42.65 16 24 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 25 H -0.24 -7.48 7.11 99.48 0.71 -6.78 16 26 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 27 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.08 1.02 8.12 -2.39 -0.02 1.00 16 29 H 0.07 1.03 8.12 -2.39 -0.02 1.01 16 30 H 0.06 1.35 6.47 -2.39 -0.02 1.33 16 31 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 32 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.09 1.64 8.06 -2.38 -0.02 1.62 16 34 H 0.04 0.80 8.12 -2.39 -0.02 0.78 16 35 H 0.07 1.78 6.55 -2.39 -0.02 1.77 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 37 H 0.07 2.13 8.11 -2.38 -0.02 2.11 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.41 16.54 4.33 -92.71 -0.40 16.14 16 40 H 0.15 6.35 8.06 -2.91 -0.02 6.33 16 41 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 42 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 43 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 44 H 0.10 4.88 7.18 -2.91 -0.02 4.86 16 45 H 0.27 15.72 5.51 -92.71 -0.51 15.21 16 Total: -1.00 -64.48 365.72 1.61 -62.87 By element: Atomic # 1 Polarization: 49.50 SS G_CDS: 0.85 Total: 50.35 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 6.69 Total: -17.95 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -7.91 Total: -109.34 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.07 Total: -28.58 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.05 Total: 42.65 kcal Total: -64.48 1.61 -62.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609629712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.806 kcal (2) G-P(sol) polarization free energy of solvation -64.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds