Wall clock time and date at job start Tue Mar 31 2020 11:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99883 * 2 1 4 4 C 1.50698 * 109.47348 * 293.95479 * 3 2 1 5 5 C 1.39874 * 126.04031 * 270.00061 * 4 3 2 6 6 N 1.30836 * 108.20052 * 179.73886 * 5 4 3 7 7 N 1.40084 * 108.20904 * 0.40640 * 6 5 4 8 8 H 0.97001 * 126.04219 * 179.85882 * 7 6 5 9 9 C 1.34947 * 107.92164 * 359.58781 * 7 6 5 10 10 C 1.46896 * 110.99994 * 123.95339 * 2 1 3 11 11 C 1.50703 * 109.46988 * 66.04674 * 10 2 1 12 12 C 1.38287 * 119.97051 * 269.72629 * 11 10 2 13 13 C 1.38245 * 120.10720 * 179.72439 * 12 11 10 14 14 C 1.38169 * 120.05700 * 0.55250 * 13 12 11 15 15 C 1.38710 * 119.94256 * 359.72122 * 14 13 12 16 16 O 1.35904 * 120.05433 * 179.97438 * 15 14 13 17 17 C 1.42895 * 116.99976 * 0.02562 * 16 15 14 18 18 C 1.52999 * 109.47147 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.47354 * 180.02562 * 18 17 16 20 20 H 1.08005 * 120.00006 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00272 * 179.97438 * 19 18 17 22 22 N 1.31509 * 119.99917 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00100 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47165 * 60.00079 * 23 21 19 25 25 H 1.48499 * 109.47277 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47021 * 300.00202 * 23 21 19 27 27 C 1.38128 * 119.96976 * 89.99602 * 11 10 2 28 28 H 1.09004 * 109.47098 * 60.00021 * 1 2 3 29 29 H 1.08993 * 109.47203 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47007 * 299.99777 * 1 2 3 31 31 H 1.09007 * 109.47163 * 173.95617 * 3 2 1 32 32 H 1.09002 * 109.47019 * 53.95729 * 3 2 1 33 33 H 1.08001 * 125.89534 * 0.02562 * 5 4 3 34 34 H 1.08006 * 126.12506 * 180.22115 * 9 7 6 35 35 H 1.08997 * 109.47182 * 186.04319 * 10 2 1 36 36 H 1.09001 * 109.47505 * 306.04613 * 10 2 1 37 37 H 1.07994 * 119.94349 * 359.97438 * 12 11 10 38 38 H 1.07998 * 119.97104 * 180.25136 * 13 12 11 39 39 H 1.08003 * 120.02671 * 179.75199 * 14 13 12 40 40 H 1.09006 * 109.47448 * 300.00502 * 17 16 15 41 41 H 1.08999 * 109.47674 * 60.00514 * 17 16 15 42 42 H 1.09005 * 109.46973 * 299.99698 * 18 17 16 43 43 H 1.09001 * 109.47346 * 60.00073 * 18 17 16 44 44 H 0.97002 * 120.00360 * 179.97438 * 22 21 19 45 45 H 1.07996 * 120.02948 * 359.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 6 2.4061 2.0458 -2.4667 6 7 1.7652 2.7308 -3.3787 7 7 0.5705 3.1983 -2.8160 8 1 -0.0997 3.7366 -3.2654 9 6 0.5140 2.7625 -1.5401 10 6 1.9954 -0.7659 1.1376 11 6 1.6369 -2.2204 0.9728 12 6 0.4532 -2.7040 1.4993 13 6 0.1188 -4.0365 1.3448 14 6 0.9724 -4.8909 0.6737 15 6 2.1630 -4.4094 0.1496 16 8 3.0045 -5.2480 -0.5105 17 6 2.5995 -6.6132 -0.6281 18 6 3.6660 -7.3973 -1.3953 19 6 3.2386 -8.8370 -1.5200 20 1 2.2999 -9.1604 -1.0948 21 6 4.0454 -9.7413 -2.1777 22 7 5.1881 -9.3474 -2.6958 23 14 3.5159 -11.5260 -2.3315 24 1 2.2256 -11.5983 -3.0630 25 1 4.5509 -12.2870 -3.0763 26 1 3.3504 -12.1118 -0.9769 27 6 2.4936 -3.0704 0.3009 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0798 1.3445 0.1082 32 1 1.5611 1.9273 0.8310 33 1 3.3616 1.5591 -2.5951 34 1 -0.2844 2.9512 -0.8376 35 1 3.0797 -0.6611 1.1756 36 1 1.5611 -0.3872 2.0628 37 1 -0.2130 -2.0388 2.0284 38 1 -0.8082 -4.4110 1.7534 39 1 0.7125 -5.9327 0.5568 40 1 2.4779 -7.0432 0.3662 41 1 1.6524 -6.6664 -1.1651 42 1 3.7878 -6.9675 -2.3897 43 1 4.6128 -7.3443 -0.8580 44 1 5.7559 -9.9836 -3.1582 45 1 3.4198 -2.6931 -0.1066 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611271961.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:29 Heat of formation + Delta-G solvation = 61.123612 kcal Electronic energy + Delta-G solvation = -24703.007450 eV Core-core repulsion = 21108.342478 eV Total energy + Delta-G solvation = -3594.664972 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.45707 -39.84324 -38.10103 -36.53064 -33.36051 -32.36371 -31.57307 -30.86540 -30.25406 -29.08366 -27.58498 -26.28528 -24.92395 -22.94379 -22.21735 -22.04398 -21.43600 -20.29133 -20.04748 -18.04016 -17.48647 -16.21604 -16.02004 -15.78668 -15.61770 -15.24551 -15.12984 -14.78712 -14.65060 -14.52275 -14.40813 -13.74338 -13.27468 -12.95597 -12.86305 -12.79328 -12.59933 -12.28721 -11.98788 -11.83698 -11.75953 -11.30788 -11.27683 -11.19834 -10.89854 -10.83115 -10.70213 -10.40165 -9.89509 -9.82112 -9.63348 -9.28783 -8.97004 -8.63635 -8.43035 -8.40164 -7.78292 -6.08014 -4.12687 1.46463 1.62460 1.72114 2.50314 2.63328 3.30148 3.34459 3.36227 3.78974 3.88353 4.22036 4.42624 4.51414 4.58403 4.74913 4.85197 4.96937 5.10944 5.14830 5.27794 5.28172 5.29611 5.33850 5.46634 5.49637 5.50766 5.54390 5.74434 5.81242 5.85098 5.90129 6.06880 6.10064 6.23482 6.35268 6.58908 6.61394 6.69299 6.77322 6.86190 6.91206 6.96368 7.04455 7.39121 7.53668 7.67241 7.84188 8.10729 8.26457 8.92667 9.51361 11.03523 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017478 B = 0.002199 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.668878 B =12728.740300 C =13730.721480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.531 5.531 3 C 0.132 3.868 4 C -0.225 4.225 5 C 0.072 3.928 6 N -0.298 5.298 7 N -0.480 5.480 8 H 0.438 0.562 9 C 0.060 3.940 10 C 0.098 3.902 11 C -0.045 4.045 12 C -0.167 4.167 13 C -0.082 4.082 14 C -0.212 4.212 15 C 0.145 3.855 16 O -0.315 6.315 17 C 0.066 3.934 18 C 0.025 3.975 19 C -0.527 4.527 20 H 0.057 0.943 21 C 0.060 3.940 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.276 1.276 27 C -0.138 4.138 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.021 0.979 31 H 0.084 0.916 32 H 0.038 0.962 33 H 0.185 0.815 34 H 0.171 0.829 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.128 0.872 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.264 0.736 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.313 25.600 8.251 29.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.255 5.255 3 C 0.004 3.996 4 C -0.237 4.237 5 C -0.115 4.115 6 N -0.120 5.120 7 N -0.188 5.188 8 H 0.281 0.719 9 C -0.088 4.088 10 C -0.029 4.029 11 C -0.045 4.045 12 C -0.186 4.186 13 C -0.100 4.100 14 C -0.231 4.231 15 C 0.098 3.902 16 O -0.228 6.228 17 C -0.008 4.008 18 C -0.012 4.012 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.158 4.158 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.039 0.961 31 H 0.102 0.898 32 H 0.056 0.944 33 H 0.202 0.798 34 H 0.188 0.812 35 H 0.103 0.897 36 H 0.061 0.939 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.146 0.854 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.074 0.926 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.757 25.755 6.426 28.641 hybrid contribution -1.219 -0.906 1.255 1.971 sum -11.976 24.849 7.681 28.634 Atomic orbital electron populations 1.22476 0.87516 1.02776 0.99944 1.61950 1.08115 1.12769 1.42616 1.20322 1.00266 0.87051 0.92002 1.19942 0.97191 1.08295 0.98300 1.23859 1.00217 0.96992 0.90449 1.77381 0.94796 1.17809 1.22043 1.46304 1.18780 1.43906 1.09761 0.71877 1.22376 0.99797 0.98697 0.87971 1.21016 1.00582 0.89914 0.91432 1.19329 0.94129 0.94142 0.96930 1.20759 0.97528 0.95676 1.04589 1.20828 0.98555 0.93249 0.97361 1.21375 0.95917 1.01169 1.04657 1.19202 0.89282 0.90706 0.91023 1.86176 1.44896 1.21832 1.69940 1.23313 1.00695 0.76599 1.00231 1.19119 0.93229 0.93190 0.95639 1.20935 1.05773 0.93043 1.36758 0.92450 1.24989 0.94851 0.99138 0.95214 1.69963 1.11189 1.35178 1.36403 0.86550 0.78318 0.84215 0.78294 1.20104 1.21119 1.20110 1.20252 1.01710 0.90515 1.03289 0.91630 0.90645 0.96066 0.89766 0.94390 0.79844 0.81153 0.89666 0.93945 0.86879 0.86360 0.85371 0.93199 0.93196 0.95379 0.95393 0.92649 0.85356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 8.94 60.07 0.54 0.72 16 2 N -0.53 -5.11 4.74 -245.82 -1.17 -6.28 16 3 C 0.13 1.02 5.45 -4.98 -0.03 0.99 16 4 C -0.23 -1.91 4.99 -105.05 -0.52 -2.43 16 5 C 0.07 0.71 11.96 -17.36 -0.21 0.50 16 6 N -0.30 -3.22 12.70 30.63 0.39 -2.83 16 7 N -0.48 -3.61 7.36 30.45 0.22 -3.39 16 8 H 0.44 1.92 8.96 -182.61 -1.64 0.28 16 9 C 0.06 0.41 10.52 -17.22 -0.18 0.23 16 10 C 0.10 0.94 5.12 -4.98 -0.03 0.91 16 11 C -0.04 -0.56 4.88 -104.64 -0.51 -1.07 16 12 C -0.17 -1.98 7.91 -39.56 -0.31 -2.29 16 13 C -0.08 -1.06 10.04 -39.60 -0.40 -1.46 16 14 C -0.21 -3.36 9.04 -39.43 -0.36 -3.71 16 15 C 0.14 2.57 6.69 -39.22 -0.26 2.30 16 16 O -0.32 -6.63 10.14 -19.44 -0.20 -6.83 16 17 C 0.07 1.43 4.68 37.16 0.17 1.61 16 18 C 0.03 0.67 5.34 -27.88 -0.15 0.53 16 19 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 20 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 23 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 C -0.14 -2.12 9.64 -39.43 -0.38 -2.50 16 28 H 0.06 0.57 6.32 -51.93 -0.33 0.25 16 29 H 0.07 0.78 5.91 -51.93 -0.31 0.47 16 30 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.08 0.60 7.93 -51.93 -0.41 0.19 16 32 H 0.04 0.25 8.12 -51.93 -0.42 -0.17 16 33 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.17 0.63 8.06 -52.48 -0.42 0.20 16 35 H 0.08 0.76 7.87 -51.93 -0.41 0.35 16 36 H 0.04 0.35 8.06 -51.93 -0.42 -0.07 16 37 H 0.11 1.08 8.00 -52.49 -0.42 0.66 16 38 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 39 H 0.13 2.01 6.30 -52.48 -0.33 1.68 16 40 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 41 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 42 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 45 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 374.35 15.07 5.64 5.64 Total: -1.00 -33.18 374.35 -10.41 -43.59 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -7.98 Total: -1.18 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -3.03 Total: -19.18 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.18 Total: -38.42 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.20 Total: -6.83 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.18 -10.41 -43.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611271961.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.709 kcal (2) G-P(sol) polarization free energy of solvation -33.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds