Wall clock time and date at job start Tue Mar 31 2020 10:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.47118 * 2 1 4 4 C 1.46902 * 110.99973 * 296.11684 * 3 2 1 5 5 C 1.50691 * 109.47182 * 295.19173 * 4 3 2 6 6 H 1.08002 * 120.00339 * 355.45294 * 5 4 3 7 7 C 1.37873 * 120.00470 * 175.45392 * 5 4 3 8 8 N 1.31517 * 120.00612 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99921 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46858 * 90.00260 * 9 7 5 11 11 H 1.48492 * 109.47444 * 210.00068 * 9 7 5 12 12 H 1.48496 * 109.46921 * 330.00446 * 9 7 5 13 13 C 1.46900 * 111.00022 * 60.06495 * 3 2 1 14 14 H 1.09004 * 109.47594 * 296.05241 * 13 3 2 15 15 C 1.52996 * 109.47512 * 176.04826 * 13 3 2 16 16 C 1.50702 * 109.47019 * 56.05040 * 13 3 2 17 17 N 1.30380 * 126.18453 * 45.04120 * 16 13 3 18 18 N 1.28663 * 109.52463 * 179.71958 * 17 16 13 19 19 C 1.31229 * 109.25319 * 0.40350 * 18 17 16 20 20 C 1.47848 * 126.38593 * 179.86177 * 19 18 17 21 21 C 1.39580 * 120.14011 * 179.90315 * 20 19 18 22 22 C 1.37945 * 119.84799 * 180.25505 * 21 20 19 23 23 C 1.38378 * 120.14521 * 359.76549 * 22 21 20 24 24 C 1.38331 * 120.28820 * 0.02562 * 23 22 21 25 25 C 1.50701 * 119.92678 * 179.97438 * 24 23 22 26 26 C 1.37977 * 120.14573 * 0.02562 * 24 23 22 27 27 O 1.34404 * 126.18836 * 225.00281 * 16 13 3 28 28 H 1.08994 * 109.47179 * 302.07158 * 1 2 3 29 29 H 1.08998 * 109.47402 * 62.07756 * 1 2 3 30 30 H 1.09003 * 109.46829 * 182.07316 * 1 2 3 31 31 H 1.08998 * 109.47360 * 239.99916 * 2 1 3 32 32 H 1.08995 * 109.47226 * 119.99727 * 2 1 3 33 33 H 1.09001 * 109.46968 * 55.19013 * 4 3 2 34 34 H 1.09006 * 109.47370 * 175.18861 * 4 3 2 35 35 H 0.96994 * 120.00739 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.47450 * 300.00440 * 15 13 3 37 37 H 1.09003 * 109.46991 * 60.00168 * 15 13 3 38 38 H 1.09003 * 109.47844 * 180.02562 * 15 13 3 39 39 H 1.07995 * 120.07515 * 359.97294 * 21 20 19 40 40 H 1.08002 * 119.92969 * 179.74855 * 22 21 20 41 41 H 1.08005 * 119.85164 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.47312 * 270.02709 * 25 24 23 43 43 H 1.08999 * 109.47102 * 30.02109 * 25 24 23 44 44 H 1.08998 * 109.47171 * 150.02039 * 25 24 23 45 45 H 1.07999 * 120.07521 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6259 2.0826 -1.2314 5 6 2.3015 1.4358 -2.4130 6 1 3.0140 0.6391 -2.2583 7 6 2.0101 1.8612 -3.6917 8 7 2.6001 1.2971 -4.7229 9 14 0.7772 3.2388 -3.9596 10 1 1.4848 4.5444 -3.9534 11 1 0.0995 3.0494 -5.2672 12 1 -0.2326 3.2179 -2.8710 13 6 1.5499 2.1094 1.1885 14 1 0.4628 2.1850 1.1619 15 6 2.1584 3.5131 1.2038 16 6 1.9715 1.3656 2.4294 17 7 3.1488 0.8537 2.6574 18 7 3.1582 0.2966 3.8171 19 6 1.9752 0.4277 4.3698 20 6 1.5677 -0.0746 5.6993 21 6 0.2686 0.1409 6.1619 22 6 -0.1036 -0.3257 7.4056 23 6 0.8063 -1.0104 8.1918 24 6 2.0941 -1.2310 7.7372 25 6 3.0786 -1.9771 8.6005 26 6 2.4794 -0.7686 6.4957 27 8 1.2023 1.1105 3.5016 28 1 -0.3633 0.5456 0.8708 29 1 -0.3634 0.4812 -0.9080 30 1 -0.3633 -1.0270 0.0372 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.5444 2.0221 -1.3533 34 1 1.9266 3.1285 -1.1686 35 1 2.3948 1.5961 -5.6225 36 1 3.2455 3.4376 1.2304 37 1 1.8535 4.0512 0.3063 38 1 1.8103 4.0505 2.0859 39 1 -0.4422 0.6758 5.5496 40 1 -1.1073 -0.1562 7.7665 41 1 0.5100 -1.3733 9.1649 42 1 3.6168 -1.2702 9.2319 43 1 2.5441 -2.6905 9.2278 44 1 3.7868 -2.5103 7.9663 45 1 3.4852 -0.9411 6.1421 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746463851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:43 Heat of formation + Delta-G solvation = 49.322389 kcal Electronic energy + Delta-G solvation = -25925.812328 eV Core-core repulsion = 22330.635617 eV Total energy + Delta-G solvation = -3595.176711 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.31709 -40.35709 -39.67281 -37.33164 -35.03464 -34.41850 -33.60961 -32.88332 -31.42262 -30.03184 -28.50903 -27.93464 -25.97985 -25.43428 -24.56343 -23.43083 -22.88735 -22.08368 -20.75055 -19.04090 -18.53394 -18.48435 -17.64410 -17.08902 -16.80262 -16.51802 -16.34068 -16.03921 -15.69363 -15.00040 -14.77108 -14.71974 -14.54109 -14.14944 -13.94404 -13.70259 -13.58100 -13.48088 -13.26048 -13.12426 -13.07176 -13.00645 -12.77392 -12.62480 -12.51589 -12.48522 -12.28605 -12.10565 -11.88513 -11.87565 -11.72297 -11.44269 -11.15261 -10.73165 -9.84856 -9.56567 -9.12334 -8.24085 -6.27935 -0.63350 0.30819 0.55269 0.93072 1.35972 1.38764 1.40501 1.49990 2.37521 2.58161 2.69467 2.91646 3.09531 3.32329 3.66500 3.84036 3.86992 3.93896 4.04168 4.04450 4.11338 4.17839 4.29475 4.30465 4.34810 4.42946 4.46866 4.51616 4.67637 4.71458 4.84304 4.84537 4.85415 4.87373 4.94302 5.00364 5.12670 5.17284 5.27035 5.28429 5.31911 5.37265 5.53291 5.55693 5.87744 5.90319 6.17990 6.56751 6.78327 7.17095 7.34326 8.92822 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.030158 B = 0.002715 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.220744 B =10312.430511 C =10459.181844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.063 3.937 3 N -0.527 5.527 4 C 0.169 3.831 5 C -0.512 4.512 6 H 0.031 0.969 7 C 0.008 3.992 8 N -0.951 5.951 9 Si 0.944 3.056 10 H -0.263 1.263 11 H -0.287 1.287 12 H -0.239 1.239 13 C 0.172 3.828 14 H 0.087 0.913 15 C -0.141 4.141 16 C 0.186 3.814 17 N -0.289 5.289 18 N -0.308 5.308 19 C 0.204 3.796 20 C -0.044 4.044 21 C -0.097 4.097 22 C -0.112 4.112 23 C -0.089 4.089 24 C -0.090 4.090 25 C -0.115 4.115 26 C -0.083 4.083 27 O -0.221 6.221 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.010 0.990 34 H 0.047 0.953 35 H 0.266 0.734 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.136 0.864 40 H 0.164 0.836 41 H 0.164 0.836 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.676 -1.153 29.722 31.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.066 4.066 3 N -0.252 5.252 4 C 0.043 3.957 5 C -0.550 4.550 6 H 0.050 0.950 7 C -0.189 4.189 8 N -0.592 5.592 9 Si 0.767 3.233 10 H -0.188 1.188 11 H -0.213 1.213 12 H -0.162 1.162 13 C 0.062 3.938 14 H 0.105 0.895 15 C -0.199 4.199 16 C -0.025 4.025 17 N -0.135 5.135 18 N -0.155 5.155 19 C -0.004 4.004 20 C -0.046 4.046 21 C -0.117 4.117 22 C -0.129 4.129 23 C -0.107 4.107 24 C -0.090 4.090 25 C -0.171 4.171 26 C -0.103 4.103 27 O -0.100 6.100 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.154 0.846 40 H 0.181 0.819 41 H 0.181 0.819 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.868 -1.486 29.350 30.422 hybrid contribution -1.793 0.546 -1.110 2.178 sum -9.660 -0.940 28.240 29.861 Atomic orbital electron populations 1.22303 0.96729 1.02946 1.01860 1.21905 0.93943 0.90048 1.00660 1.62030 1.59993 1.02205 1.01004 1.20147 0.94453 0.95072 0.85996 1.21147 1.24069 1.19339 0.90469 0.95039 1.25843 0.98286 0.99423 0.95362 1.70062 1.45340 1.44507 0.99262 0.85765 0.79782 0.79402 0.78360 1.18821 1.21293 1.16232 1.20183 0.99324 0.92690 0.81604 0.89519 1.21953 1.01968 0.91768 1.04165 1.28072 0.85795 0.98507 0.90147 1.74470 1.19723 1.11218 1.08087 1.74708 1.19065 1.19233 1.02490 1.26088 0.85908 0.94275 0.94118 1.17428 0.96757 1.03987 0.86411 1.21445 0.93556 0.99067 0.97635 1.21458 1.01592 0.97208 0.92677 1.21734 0.91929 0.96163 1.00867 1.20173 0.96523 0.98512 0.93797 1.20881 0.97544 0.99870 0.98842 1.21154 0.99085 0.96044 0.93993 1.84797 1.42431 1.57617 1.25157 0.92102 0.92344 0.91079 0.91934 0.93422 0.97231 0.93504 0.92521 0.92085 0.89360 0.89489 0.84647 0.81872 0.81894 0.89876 0.89186 0.91490 0.85458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.05 9.24 71.98 0.66 -5.39 16 2 C 0.06 2.56 5.56 86.30 0.48 3.04 16 3 N -0.53 -22.05 4.57 -879.94 -4.02 -26.07 16 4 C 0.17 7.66 3.41 85.55 0.29 7.95 16 5 C -0.51 -29.16 8.90 25.60 0.23 -28.93 16 6 H 0.03 2.06 7.46 -2.91 -0.02 2.04 16 7 C 0.01 0.45 5.47 84.65 0.46 0.91 16 8 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 9 Si 0.94 42.18 27.56 68.60 1.89 44.07 16 10 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 11 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.24 -9.54 6.41 99.48 0.64 -8.90 16 13 C 0.17 5.77 2.11 44.17 0.09 5.86 16 14 H 0.09 2.55 6.48 -2.39 -0.02 2.54 16 15 C -0.14 -4.11 8.96 71.98 0.65 -3.47 16 16 C 0.19 6.51 5.71 88.33 0.50 7.01 16 17 N -0.29 -11.52 11.90 -165.34 -1.97 -13.49 16 18 N -0.31 -11.29 11.92 -166.30 -1.98 -13.27 16 19 C 0.20 6.30 7.99 87.33 0.70 7.00 16 20 C -0.04 -1.03 5.87 -20.10 -0.12 -1.15 16 21 C -0.10 -1.71 9.73 22.52 0.22 -1.49 16 22 C -0.11 -1.26 10.03 22.23 0.22 -1.04 16 23 C -0.09 -0.90 9.69 22.33 0.22 -0.68 16 24 C -0.09 -1.25 5.87 -19.90 -0.12 -1.37 16 25 C -0.11 -1.01 10.01 71.24 0.71 -0.30 16 26 C -0.08 -1.71 9.35 22.52 0.21 -1.50 16 27 O -0.22 -6.88 10.67 -8.51 -0.09 -6.97 16 28 H 0.06 1.80 6.38 -2.39 -0.02 1.79 16 29 H 0.06 2.10 6.49 -2.39 -0.02 2.09 16 30 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 2.97 6.77 -2.39 -0.02 2.95 16 32 H 0.05 1.95 6.73 -2.39 -0.02 1.93 16 33 H 0.01 0.44 4.96 -2.39 -0.01 0.43 16 34 H 0.05 2.01 5.53 -2.38 -0.01 2.00 16 35 H 0.27 15.51 8.31 -92.71 -0.77 14.73 16 36 H 0.06 1.99 8.14 -2.38 -0.02 1.98 16 37 H 0.09 2.48 6.22 -2.39 -0.01 2.46 16 38 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.14 2.17 7.94 -2.91 -0.02 2.15 16 40 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 41 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 42 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.09 0.44 8.08 -2.39 -0.02 0.42 16 44 H 0.07 0.66 8.08 -2.39 -0.02 0.64 16 45 H 0.13 2.83 7.86 -2.91 -0.02 2.81 16 Total: -1.00 -73.52 365.10 0.48 -73.04 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.93 Total: 15.38 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 5.41 Total: -13.54 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -7.67 Total: -111.98 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.09 Total: -6.97 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.89 Total: 44.07 kcal Total: -73.52 0.48 -73.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746463851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.363 kcal (2) G-P(sol) polarization free energy of solvation -73.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds