Wall clock time and date at job start Tue Mar 31 2020 11:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99712 * 2 1 4 4 C 1.52998 * 109.47198 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47392 * 65.00074 * 4 3 2 6 6 C 1.46501 * 119.99691 * 275.00477 * 5 4 3 7 7 N 1.40094 * 120.00272 * 94.99509 * 5 4 3 8 8 C 1.29782 * 120.00444 * 180.02562 * 7 5 4 9 9 C 1.47351 * 120.00322 * 180.02562 * 8 7 5 10 10 C 1.35905 * 126.68944 * 179.97438 * 9 8 7 11 11 N 1.36540 * 109.68560 * 180.02562 * 10 9 8 12 12 C 1.46506 * 124.89566 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.46925 * 264.97522 * 12 11 10 14 14 H 1.07997 * 120.00160 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99497 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00419 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99681 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47110 * 90.00180 * 17 15 13 19 19 H 1.48495 * 109.47431 * 210.00422 * 17 15 13 20 20 H 1.48500 * 109.47382 * 330.00749 * 17 15 13 21 21 C 1.37808 * 110.20931 * 359.97438 * 11 10 9 22 22 C 1.39173 * 133.25989 * 180.02562 * 21 11 10 23 23 C 1.37762 * 119.79117 * 179.97438 * 22 21 11 24 24 C 1.38785 * 120.63262 * 0.02562 * 23 22 21 25 25 C 1.36714 * 120.47025 * 0.02562 * 24 23 22 26 26 C 1.39360 * 119.79522 * 0.26445 * 25 24 23 27 27 H 1.08988 * 109.47233 * 60.00446 * 1 2 3 28 28 H 1.09008 * 109.46708 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46867 * 299.99915 * 1 2 3 30 30 H 1.09002 * 109.47745 * 60.00066 * 3 2 1 31 31 H 1.09003 * 109.47279 * 299.99572 * 3 2 1 32 32 H 1.09000 * 109.47431 * 305.00174 * 4 3 2 33 33 H 1.09001 * 109.47363 * 184.99773 * 4 3 2 34 34 H 1.09003 * 109.47071 * 269.99735 * 6 5 4 35 35 H 1.09002 * 109.47067 * 29.99069 * 6 5 4 36 36 H 1.08994 * 109.47075 * 149.99846 * 6 5 4 37 37 H 1.08010 * 119.99366 * 0.02562 * 8 7 5 38 38 H 1.07999 * 125.15691 * 0.02562 * 10 9 8 39 39 H 1.08999 * 109.47119 * 24.97495 * 12 11 10 40 40 H 1.09005 * 109.46936 * 144.97402 * 12 11 10 41 41 H 0.96998 * 120.00345 * 179.97438 * 16 15 13 42 42 H 1.08002 * 120.10682 * 359.97277 * 22 21 11 43 43 H 1.08004 * 119.68176 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.76406 * 180.02562 * 24 23 22 45 45 H 1.08002 * 120.09890 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.0004 -0.8949 -1.3782 7 7 4.3729 1.3670 -2.3302 8 6 4.7625 0.8176 -3.4396 9 6 5.1809 1.6617 -4.5726 10 6 5.6110 1.2337 -5.7887 11 7 5.9091 2.3088 -6.5758 12 6 6.4016 2.2284 -7.9532 13 6 7.9066 2.3052 -7.9538 14 1 8.4426 2.4045 -7.0215 15 6 8.5993 2.2487 -9.1447 16 7 7.9466 2.1283 -10.2800 17 14 10.4648 2.3446 -9.1455 18 1 11.0309 0.9759 -9.0379 19 1 10.9276 2.9738 -10.4084 20 1 10.9191 3.1602 -7.9907 21 6 5.6788 3.4807 -5.8880 22 6 5.8172 4.8249 -6.2210 23 6 5.4986 5.7953 -5.2965 24 6 5.0406 5.4459 -4.0338 25 6 4.8988 4.1311 -3.6871 26 6 5.2215 3.1340 -4.6056 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8465 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8515 0.5683 0.8409 33 1 3.9784 2.1766 0.0889 34 1 4.9739 -1.2703 -1.0625 35 1 3.2228 -1.3269 -0.7483 36 1 3.8231 -1.1733 -2.4169 37 1 4.7801 -0.2583 -3.5323 38 1 5.7030 0.1999 -6.0873 39 1 6.0858 1.2844 -8.3974 40 1 5.9952 3.0569 -8.5333 41 1 8.4338 2.0889 -11.1178 42 1 6.1732 5.1064 -7.2010 43 1 5.6070 6.8379 -5.5566 44 1 4.7945 6.2182 -3.3201 45 1 4.5423 3.8660 -2.7026 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794971906.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:44 Heat of formation + Delta-G solvation = 61.838899 kcal Electronic energy + Delta-G solvation = -25354.463198 eV Core-core repulsion = 21759.829244 eV Total energy + Delta-G solvation = -3594.633955 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.53526 -38.36884 -36.91767 -36.40624 -33.88511 -32.97507 -31.32080 -29.58889 -29.54019 -28.40238 -27.16055 -26.70650 -25.32460 -23.45283 -22.60224 -21.79577 -21.06805 -19.72239 -18.49042 -17.22850 -16.75848 -16.41906 -16.21842 -15.93230 -15.52381 -15.40541 -14.91040 -14.65410 -14.44266 -13.99171 -13.82826 -13.30477 -13.09539 -12.84745 -12.58177 -12.38668 -12.20325 -12.12697 -12.02713 -11.81508 -11.56544 -11.50559 -11.26371 -11.23973 -11.04885 -10.81636 -10.71959 -10.45136 -10.15924 -9.88566 -9.66374 -9.44849 -8.94138 -8.69010 -7.79020 -7.46386 -6.57294 -6.25127 -4.38597 1.66432 2.18000 2.56118 2.92228 3.18582 3.25534 3.30515 3.60470 3.78441 3.89484 4.27193 4.63623 4.84178 4.92699 5.03607 5.04221 5.13395 5.15604 5.20619 5.25714 5.38200 5.42668 5.45433 5.53751 5.57998 5.63098 5.72657 5.76666 5.89242 5.89477 6.12698 6.28502 6.31922 6.45975 6.60855 6.69428 6.85408 6.92957 6.95980 7.12641 7.23245 7.33460 7.44148 7.55852 7.63412 7.84336 8.07065 8.12088 8.69619 8.72479 9.29374 10.77085 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017603 B = 0.002889 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.274348 B = 9691.237521 C =10526.932964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.038 3.962 4 C 0.170 3.830 5 N -0.552 5.552 6 C 0.077 3.923 7 N -0.249 5.249 8 C 0.119 3.881 9 C -0.171 4.171 10 C 0.106 3.894 11 N -0.443 5.443 12 C 0.234 3.766 13 C -0.541 4.541 14 H 0.066 0.934 15 C 0.066 3.934 16 N -0.891 5.891 17 Si 0.904 3.096 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.271 1.271 21 C 0.100 3.900 22 C -0.111 4.111 23 C -0.119 4.119 24 C -0.160 4.160 25 C -0.070 4.070 26 C -0.085 4.085 27 H 0.039 0.961 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.107 0.893 38 H 0.166 0.834 39 H 0.049 0.951 40 H 0.046 0.954 41 H 0.268 0.732 42 H 0.120 0.880 43 H 0.115 0.885 44 H 0.110 0.890 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.253 -2.019 17.016 20.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.307 6.307 3 C -0.041 4.041 4 C 0.046 3.954 5 N -0.367 5.367 6 C -0.068 4.068 7 N -0.054 5.054 8 C -0.091 4.091 9 C -0.181 4.181 10 C -0.031 4.031 11 N -0.120 5.120 12 C 0.116 3.884 13 C -0.579 4.579 14 H 0.084 0.916 15 C -0.137 4.137 16 N -0.529 5.529 17 Si 0.731 3.269 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.196 1.196 21 C -0.008 4.008 22 C -0.131 4.131 23 C -0.139 4.139 24 C -0.179 4.179 25 C -0.089 4.089 26 C -0.090 4.090 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.124 0.876 38 H 0.183 0.817 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.138 0.862 43 H 0.133 0.867 44 H 0.128 0.872 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.200 -1.472 17.087 20.484 hybrid contribution 0.883 -0.713 -0.557 1.264 sum -10.318 -2.185 16.530 19.608 Atomic orbital electron populations 1.22701 0.81516 1.02435 0.99785 1.87865 1.19327 1.28169 1.95388 1.23302 0.95689 0.84778 1.00293 1.21008 0.90541 0.99476 0.84391 1.49785 1.74436 1.01548 1.10899 1.21759 1.00739 0.82295 1.02044 1.74396 1.11331 1.23129 0.96516 1.23117 0.99057 0.96260 0.90660 1.18122 1.15964 0.90680 0.93319 1.21885 0.98440 0.92844 0.89956 1.44748 1.49925 1.03032 1.14253 1.19754 0.95375 0.99547 0.73723 1.21366 0.90403 1.52442 0.93708 0.91606 1.24940 0.99402 0.94353 0.95040 1.69915 1.36237 1.48832 0.97880 0.86389 0.84261 0.78526 0.77763 1.20310 1.20887 1.19571 1.18276 1.02396 0.88177 0.91926 1.20150 1.03021 0.89507 1.00394 1.20652 1.01436 0.98054 0.93731 1.20495 1.04841 0.95732 0.96822 1.20199 0.98861 0.91293 0.98515 1.18932 1.04348 0.92264 0.93506 0.94231 0.89922 0.94346 0.92994 0.92787 0.90807 0.89024 0.94544 0.90620 0.92389 0.87634 0.81692 0.93340 0.93602 0.92253 0.86154 0.86734 0.87186 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.14 9.08 -35.23 -0.32 -4.46 16 3 C 0.04 0.37 6.28 37.16 0.23 0.61 16 4 C 0.17 1.79 6.43 -4.04 -0.03 1.77 16 5 N -0.55 -7.35 3.85 -121.75 -0.47 -7.82 16 6 C 0.08 0.89 9.99 59.85 0.60 1.49 16 7 N -0.25 -3.97 10.27 32.13 0.33 -3.64 16 8 C 0.12 1.92 10.39 -14.71 -0.15 1.76 16 9 C -0.17 -3.14 6.27 -103.33 -0.65 -3.79 16 10 C 0.11 1.99 11.25 -16.29 -0.18 1.80 16 11 N -0.44 -9.59 2.75 -115.33 -0.32 -9.91 16 12 C 0.23 5.64 5.73 -5.19 -0.03 5.61 16 13 C -0.54 -14.32 9.39 -34.44 -0.32 -14.64 16 14 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 15 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -24.53 13.29 55.43 0.74 -23.79 16 17 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 21 C 0.10 2.12 6.80 -83.98 -0.57 1.55 16 22 C -0.11 -2.18 9.98 -39.41 -0.39 -2.58 16 23 C -0.12 -2.02 10.01 -39.55 -0.40 -2.41 16 24 C -0.16 -2.60 9.98 -39.93 -0.40 -3.00 16 25 C -0.07 -1.25 9.77 -39.72 -0.39 -1.63 16 26 C -0.09 -1.69 6.26 -104.93 -0.66 -2.34 16 27 H 0.04 0.32 8.14 -51.94 -0.42 -0.11 16 28 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.82 6.67 -51.93 -0.35 0.47 16 36 H 0.06 0.66 6.19 -51.93 -0.32 0.34 16 37 H 0.11 1.46 5.91 -52.48 -0.31 1.15 16 38 H 0.17 2.58 8.06 -52.49 -0.42 2.16 16 39 H 0.05 1.18 8.11 -51.93 -0.42 0.76 16 40 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 43 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 44 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 45 H 0.12 2.01 7.24 -52.49 -0.38 1.63 16 LS Contribution 380.81 15.07 5.74 5.74 Total: -1.00 -30.00 380.81 -8.46 -38.46 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.82 Total: 2.51 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -2.32 Total: -12.78 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.28 Total: -45.17 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -0.32 Total: -4.46 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.00 -8.46 -38.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794971906.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.295 kcal (2) G-P(sol) polarization free energy of solvation -29.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds