Wall clock time and date at job start Tue Mar 31 2020 11:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99712 * 2 1 4 4 C 1.52998 * 109.47198 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47392 * 65.00074 * 4 3 2 6 6 C 1.46501 * 119.99691 * 275.00477 * 5 4 3 7 7 N 1.40094 * 120.00272 * 94.99509 * 5 4 3 8 8 C 1.29782 * 120.00444 * 180.02562 * 7 5 4 9 9 C 1.47351 * 120.00322 * 180.02562 * 8 7 5 10 10 C 1.35905 * 126.68944 * 179.97438 * 9 8 7 11 11 N 1.36540 * 109.68560 * 180.02562 * 10 9 8 12 12 C 1.46506 * 124.89566 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.46925 * 264.97522 * 12 11 10 14 14 H 1.07997 * 120.00160 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99497 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00419 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99681 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47110 * 90.00180 * 17 15 13 19 19 H 1.48495 * 109.47431 * 210.00422 * 17 15 13 20 20 H 1.48500 * 109.47382 * 330.00749 * 17 15 13 21 21 C 1.37808 * 110.20931 * 359.97438 * 11 10 9 22 22 C 1.39173 * 133.25989 * 180.02562 * 21 11 10 23 23 C 1.37762 * 119.79117 * 179.97438 * 22 21 11 24 24 C 1.38785 * 120.63262 * 0.02562 * 23 22 21 25 25 C 1.36714 * 120.47025 * 0.02562 * 24 23 22 26 26 C 1.39360 * 119.79522 * 0.26445 * 25 24 23 27 27 H 1.08988 * 109.47233 * 60.00446 * 1 2 3 28 28 H 1.09008 * 109.46708 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46867 * 299.99915 * 1 2 3 30 30 H 1.09002 * 109.47745 * 60.00066 * 3 2 1 31 31 H 1.09003 * 109.47279 * 299.99572 * 3 2 1 32 32 H 1.09000 * 109.47431 * 305.00174 * 4 3 2 33 33 H 1.09001 * 109.47363 * 184.99773 * 4 3 2 34 34 H 1.09003 * 109.47071 * 269.99735 * 6 5 4 35 35 H 1.09002 * 109.47067 * 29.99069 * 6 5 4 36 36 H 1.08994 * 109.47075 * 149.99846 * 6 5 4 37 37 H 1.08010 * 119.99366 * 0.02562 * 8 7 5 38 38 H 1.07999 * 125.15691 * 0.02562 * 10 9 8 39 39 H 1.08999 * 109.47119 * 24.97495 * 12 11 10 40 40 H 1.09005 * 109.46936 * 144.97402 * 12 11 10 41 41 H 0.96998 * 120.00345 * 179.97438 * 16 15 13 42 42 H 1.08002 * 120.10682 * 359.97277 * 22 21 11 43 43 H 1.08004 * 119.68176 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.76406 * 180.02562 * 24 23 22 45 45 H 1.08002 * 120.09890 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.0004 -0.8949 -1.3782 7 7 4.3729 1.3670 -2.3302 8 6 4.7625 0.8176 -3.4396 9 6 5.1809 1.6617 -4.5726 10 6 5.6110 1.2337 -5.7887 11 7 5.9091 2.3088 -6.5758 12 6 6.4016 2.2284 -7.9532 13 6 7.9066 2.3052 -7.9538 14 1 8.4426 2.4045 -7.0215 15 6 8.5993 2.2487 -9.1447 16 7 7.9466 2.1283 -10.2800 17 14 10.4648 2.3446 -9.1455 18 1 11.0309 0.9759 -9.0379 19 1 10.9276 2.9738 -10.4084 20 1 10.9191 3.1602 -7.9907 21 6 5.6788 3.4807 -5.8880 22 6 5.8172 4.8249 -6.2210 23 6 5.4986 5.7953 -5.2965 24 6 5.0406 5.4459 -4.0338 25 6 4.8988 4.1311 -3.6871 26 6 5.2215 3.1340 -4.6056 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8465 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8515 0.5683 0.8409 33 1 3.9784 2.1766 0.0889 34 1 4.9739 -1.2703 -1.0625 35 1 3.2228 -1.3269 -0.7483 36 1 3.8231 -1.1733 -2.4169 37 1 4.7801 -0.2583 -3.5323 38 1 5.7030 0.1999 -6.0873 39 1 6.0858 1.2844 -8.3974 40 1 5.9952 3.0569 -8.5333 41 1 8.4338 2.0889 -11.1178 42 1 6.1732 5.1064 -7.2010 43 1 5.6070 6.8379 -5.5566 44 1 4.7945 6.2182 -3.3201 45 1 4.5423 3.8660 -2.7026 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794971906.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:44 Heat of formation + Delta-G solvation = 46.430176 kcal Electronic energy + Delta-G solvation = -25355.131371 eV Core-core repulsion = 21759.829244 eV Total energy + Delta-G solvation = -3595.302127 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.01591 -39.19753 -37.94735 -37.84249 -35.53537 -34.46431 -32.71710 -31.11817 -30.54367 -29.79669 -28.67305 -27.59657 -26.42517 -25.06209 -23.80067 -23.24192 -22.33128 -21.08973 -19.80728 -18.78053 -18.24503 -17.60116 -17.21054 -17.10490 -16.77808 -16.46199 -16.21563 -16.08979 -15.65201 -15.49728 -14.86850 -14.71048 -14.63022 -14.21723 -13.93068 -13.64236 -13.49022 -13.25330 -13.06126 -13.04123 -12.83773 -12.73057 -12.68328 -12.63787 -12.37724 -12.32153 -12.26051 -12.00465 -11.67213 -11.47785 -10.73850 -10.66469 -10.60897 -10.39681 -9.04031 -8.92173 -8.36900 -7.80854 -6.49850 0.25748 0.79433 1.16760 1.36908 1.38255 1.49362 1.88206 2.23549 2.40033 2.48016 2.91272 2.97454 3.20095 3.85296 3.90298 3.99905 4.17640 4.20167 4.34132 4.38530 4.39712 4.43342 4.49169 4.52317 4.57581 4.61917 4.72090 4.74978 4.82669 4.87304 4.88592 4.95017 4.97479 5.00995 5.05735 5.11034 5.31417 5.49082 5.55830 5.73349 5.83928 5.85653 6.00764 6.14093 6.21113 6.37130 6.43093 6.55908 6.71149 7.22420 7.56975 8.73199 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017603 B = 0.002889 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.274348 B = 9691.237521 C =10526.932964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.407 6.407 3 C 0.043 3.957 4 C 0.162 3.838 5 N -0.553 5.553 6 C 0.077 3.923 7 N -0.255 5.255 8 C 0.103 3.897 9 C -0.162 4.162 10 C 0.086 3.914 11 N -0.462 5.462 12 C 0.252 3.748 13 C -0.553 4.553 14 H 0.051 0.949 15 C 0.022 3.978 16 N -0.919 5.919 17 Si 0.966 3.034 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.274 1.274 21 C 0.070 3.930 22 C -0.142 4.142 23 C -0.107 4.107 24 C -0.152 4.152 25 C -0.073 4.073 26 C -0.106 4.106 27 H 0.033 0.967 28 H 0.094 0.906 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.034 0.966 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.127 0.873 38 H 0.188 0.812 39 H 0.040 0.960 40 H 0.023 0.977 41 H 0.272 0.728 42 H 0.105 0.895 43 H 0.147 0.853 44 H 0.149 0.851 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.471 -1.807 19.583 22.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.326 6.326 3 C -0.035 4.035 4 C 0.039 3.961 5 N -0.369 5.369 6 C -0.068 4.068 7 N -0.060 5.060 8 C -0.108 4.108 9 C -0.171 4.171 10 C -0.049 4.049 11 N -0.140 5.140 12 C 0.132 3.868 13 C -0.591 4.591 14 H 0.069 0.931 15 C -0.179 4.179 16 N -0.557 5.557 17 Si 0.790 3.210 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.198 1.198 21 C -0.037 4.037 22 C -0.162 4.162 23 C -0.126 4.126 24 C -0.171 4.171 25 C -0.092 4.092 26 C -0.111 4.111 27 H 0.052 0.948 28 H 0.112 0.888 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.144 0.856 38 H 0.205 0.795 39 H 0.058 0.942 40 H 0.041 0.959 41 H 0.081 0.919 42 H 0.123 0.877 43 H 0.164 0.836 44 H 0.167 0.833 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.443 -1.272 19.689 22.809 hybrid contribution 0.813 -0.736 -1.151 1.590 sum -10.630 -2.008 18.538 21.464 Atomic orbital electron populations 1.22841 0.80236 1.03438 1.00275 1.87826 1.20778 1.28528 1.95504 1.23216 0.95081 0.84677 1.00516 1.21272 0.91136 1.00022 0.83664 1.50085 1.73720 1.02323 1.10749 1.21836 1.01490 0.81240 1.02257 1.74247 1.10036 1.24752 0.96987 1.23015 1.00628 0.96840 0.90269 1.18379 1.14478 0.90533 0.93749 1.22295 0.99165 0.93318 0.90088 1.44572 1.51658 1.04208 1.13596 1.19270 0.94198 0.97921 0.75374 1.21512 0.91659 1.52613 0.93288 0.93053 1.25715 1.03736 0.93816 0.94598 1.70000 1.37926 1.49406 0.98412 0.85427 0.78999 0.78798 0.77739 1.19319 1.20022 1.19844 1.18679 1.03610 0.88563 0.92856 1.20304 1.05135 0.89981 1.00802 1.21039 0.99341 0.98960 0.93279 1.20923 1.03094 0.96084 0.97038 1.20445 0.98527 0.91642 0.98574 1.19289 1.04979 0.93445 0.93396 0.94789 0.88768 0.92772 0.90477 0.94788 0.88961 0.88629 0.93740 0.89704 0.92502 0.85630 0.79485 0.94192 0.95934 0.91885 0.87700 0.83564 0.83289 0.85039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.41 -7.80 9.08 -148.98 -1.35 -9.15 16 3 C 0.04 0.76 6.28 71.98 0.45 1.21 16 4 C 0.16 3.04 6.43 86.38 0.56 3.59 16 5 N -0.55 -13.68 3.85 -539.12 -2.08 -15.76 16 6 C 0.08 1.62 9.99 127.77 1.28 2.89 16 7 N -0.25 -7.78 10.27 -52.25 -0.54 -8.32 16 8 C 0.10 3.23 10.39 87.40 0.91 4.13 16 9 C -0.16 -6.01 6.27 -19.03 -0.12 -6.13 16 10 C 0.09 3.32 11.25 83.42 0.94 4.26 16 11 N -0.46 -20.98 2.75 -518.78 -1.43 -22.41 16 12 C 0.25 12.84 5.73 85.63 0.49 13.33 16 13 C -0.55 -30.34 9.39 25.60 0.24 -30.10 16 14 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 15 C 0.02 1.20 5.46 84.66 0.46 1.67 16 16 N -0.92 -51.70 13.29 21.45 0.28 -51.41 16 17 Si 0.97 42.89 29.54 68.60 2.03 44.91 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 C 0.07 3.06 6.80 38.98 0.26 3.33 16 22 C -0.14 -5.77 9.98 22.38 0.22 -5.54 16 23 C -0.11 -3.49 10.01 22.29 0.22 -3.26 16 24 C -0.15 -4.60 9.98 22.04 0.22 -4.38 16 25 C -0.07 -2.52 9.77 22.18 0.22 -2.30 16 26 C -0.11 -4.22 6.26 -20.07 -0.13 -4.35 16 27 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 1.41 8.11 -2.39 -0.02 1.39 16 33 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.04 0.87 8.14 -2.39 -0.02 0.86 16 35 H 0.08 1.64 6.67 -2.39 -0.02 1.63 16 36 H 0.06 1.21 6.19 -2.39 -0.01 1.19 16 37 H 0.13 3.35 5.91 -2.91 -0.02 3.33 16 38 H 0.19 6.02 8.06 -2.91 -0.02 5.99 16 39 H 0.04 2.06 8.11 -2.39 -0.02 2.04 16 40 H 0.02 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.27 14.35 8.31 -92.71 -0.77 13.57 16 42 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 43 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 44 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 45 H 0.13 4.15 7.24 -2.91 -0.02 4.13 16 Total: -1.00 -65.66 380.81 5.37 -60.29 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.97 Total: 21.84 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 7.48 Total: -20.00 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -3.75 Total: -97.90 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -1.35 Total: -9.15 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -65.66 5.37 -60.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794971906.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.724 kcal (2) G-P(sol) polarization free energy of solvation -65.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds