Wall clock time and date at job start Tue Mar 31 2020 11:17:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.42897 * 113.99712 * 2 1
4 4 C 1.52998 * 109.47198 * 180.02562 * 3 2 1
5 5 N 1.46504 * 109.47392 * 65.00074 * 4 3 2
6 6 C 1.46501 * 119.99691 * 275.00477 * 5 4 3
7 7 N 1.40094 * 120.00272 * 94.99509 * 5 4 3
8 8 C 1.29782 * 120.00444 * 180.02562 * 7 5 4
9 9 C 1.47351 * 120.00322 * 180.02562 * 8 7 5
10 10 C 1.35905 * 126.68944 * 179.97438 * 9 8 7
11 11 N 1.36540 * 109.68560 * 180.02562 * 10 9 8
12 12 C 1.46506 * 124.89566 * 180.02562 * 11 10 9
13 13 C 1.50695 * 109.46925 * 264.97522 * 12 11 10
14 14 H 1.07997 * 120.00160 * 359.97438 * 13 12 11
15 15 C 1.37884 * 119.99497 * 179.97438 * 13 12 11
16 16 N 1.31508 * 120.00419 * 0.02562 * 15 13 12
17 17 Si 1.86800 * 119.99681 * 179.97438 * 15 13 12
18 18 H 1.48505 * 109.47110 * 90.00180 * 17 15 13
19 19 H 1.48495 * 109.47431 * 210.00422 * 17 15 13
20 20 H 1.48500 * 109.47382 * 330.00749 * 17 15 13
21 21 C 1.37808 * 110.20931 * 359.97438 * 11 10 9
22 22 C 1.39173 * 133.25989 * 180.02562 * 21 11 10
23 23 C 1.37762 * 119.79117 * 179.97438 * 22 21 11
24 24 C 1.38785 * 120.63262 * 0.02562 * 23 22 21
25 25 C 1.36714 * 120.47025 * 0.02562 * 24 23 22
26 26 C 1.39360 * 119.79522 * 0.26445 * 25 24 23
27 27 H 1.08988 * 109.47233 * 60.00446 * 1 2 3
28 28 H 1.09008 * 109.46708 * 179.97438 * 1 2 3
29 29 H 1.08999 * 109.46867 * 299.99915 * 1 2 3
30 30 H 1.09002 * 109.47745 * 60.00066 * 3 2 1
31 31 H 1.09003 * 109.47279 * 299.99572 * 3 2 1
32 32 H 1.09000 * 109.47431 * 305.00174 * 4 3 2
33 33 H 1.09001 * 109.47363 * 184.99773 * 4 3 2
34 34 H 1.09003 * 109.47071 * 269.99735 * 6 5 4
35 35 H 1.09002 * 109.47067 * 29.99069 * 6 5 4
36 36 H 1.08994 * 109.47075 * 149.99846 * 6 5 4
37 37 H 1.08010 * 119.99366 * 0.02562 * 8 7 5
38 38 H 1.07999 * 125.15691 * 0.02562 * 10 9 8
39 39 H 1.08999 * 109.47119 * 24.97495 * 12 11 10
40 40 H 1.09005 * 109.46936 * 144.97402 * 12 11 10
41 41 H 0.96998 * 120.00345 * 179.97438 * 16 15 13
42 42 H 1.08002 * 120.10682 * 359.97277 * 22 21 11
43 43 H 1.08004 * 119.68176 * 179.97438 * 23 22 21
44 44 H 1.08002 * 119.76406 * 180.02562 * 24 23 22
45 45 H 1.08002 * 120.09890 * 179.97438 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 -0.0006
5 7 3.9757 0.5645 -1.2528
6 6 4.0004 -0.8949 -1.3782
7 7 4.3729 1.3670 -2.3302
8 6 4.7625 0.8176 -3.4396
9 6 5.1809 1.6617 -4.5726
10 6 5.6110 1.2337 -5.7887
11 7 5.9091 2.3088 -6.5758
12 6 6.4016 2.2284 -7.9532
13 6 7.9066 2.3052 -7.9538
14 1 8.4426 2.4045 -7.0215
15 6 8.5993 2.2487 -9.1447
16 7 7.9466 2.1283 -10.2800
17 14 10.4648 2.3446 -9.1455
18 1 11.0309 0.9759 -9.0379
19 1 10.9276 2.9738 -10.4084
20 1 10.9191 3.1602 -7.9907
21 6 5.6788 3.4807 -5.8880
22 6 5.8172 4.8249 -6.2210
23 6 5.4986 5.7953 -5.2965
24 6 5.0406 5.4459 -4.0338
25 6 4.8988 4.1311 -3.6871
26 6 5.2215 3.1340 -4.6056
27 1 -0.3633 0.5137 -0.8899
28 1 -0.3633 -1.0278 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 1.6886 1.8465 0.8900
31 1 1.6886 1.8464 -0.8900
32 1 3.8515 0.5683 0.8409
33 1 3.9784 2.1766 0.0889
34 1 4.9739 -1.2703 -1.0625
35 1 3.2228 -1.3269 -0.7483
36 1 3.8231 -1.1733 -2.4169
37 1 4.7801 -0.2583 -3.5323
38 1 5.7030 0.1999 -6.0873
39 1 6.0858 1.2844 -8.3974
40 1 5.9952 3.0569 -8.5333
41 1 8.4338 2.0889 -11.1178
42 1 6.1732 5.1064 -7.2010
43 1 5.6070 6.8379 -5.5566
44 1 4.7945 6.2182 -3.3201
45 1 4.5423 3.8660 -2.7026
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000794971906.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:17:44
Heat of formation + Delta-G solvation = 46.430176 kcal
Electronic energy + Delta-G solvation = -25355.131371 eV
Core-core repulsion = 21759.829244 eV
Total energy + Delta-G solvation = -3595.302127 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-42.01591 -39.19753 -37.94735 -37.84249 -35.53537 -34.46431 -32.71710 -31.11817
-30.54367 -29.79669 -28.67305 -27.59657 -26.42517 -25.06209 -23.80067 -23.24192
-22.33128 -21.08973 -19.80728 -18.78053 -18.24503 -17.60116 -17.21054 -17.10490
-16.77808 -16.46199 -16.21563 -16.08979 -15.65201 -15.49728 -14.86850 -14.71048
-14.63022 -14.21723 -13.93068 -13.64236 -13.49022 -13.25330 -13.06126 -13.04123
-12.83773 -12.73057 -12.68328 -12.63787 -12.37724 -12.32153 -12.26051 -12.00465
-11.67213 -11.47785 -10.73850 -10.66469 -10.60897 -10.39681 -9.04031 -8.92173
-8.36900 -7.80854 -6.49850 0.25748 0.79433 1.16760 1.36908 1.38255
1.49362 1.88206 2.23549 2.40033 2.48016 2.91272 2.97454 3.20095
3.85296 3.90298 3.99905 4.17640 4.20167 4.34132 4.38530 4.39712
4.43342 4.49169 4.52317 4.57581 4.61917 4.72090 4.74978 4.82669
4.87304 4.88592 4.95017 4.97479 5.00995 5.05735 5.11034 5.31417
5.49082 5.55830 5.73349 5.83928 5.85653 6.00764 6.14093 6.21113
6.37130 6.43093 6.55908 6.71149 7.22420 7.56975 8.73199
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.017603 B = 0.002889 C = 0.002659
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1590.274348 B = 9691.237521 C =10526.932964
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.407 6.407
3 C 0.043 3.957
4 C 0.162 3.838
5 N -0.553 5.553
6 C 0.077 3.923
7 N -0.255 5.255
8 C 0.103 3.897
9 C -0.162 4.162
10 C 0.086 3.914
11 N -0.462 5.462
12 C 0.252 3.748
13 C -0.553 4.553
14 H 0.051 0.949
15 C 0.022 3.978
16 N -0.919 5.919
17 Si 0.966 3.034
18 H -0.268 1.268
19 H -0.275 1.275
20 H -0.274 1.274
21 C 0.070 3.930
22 C -0.142 4.142
23 C -0.107 4.107
24 C -0.152 4.152
25 C -0.073 4.073
26 C -0.106 4.106
27 H 0.033 0.967
28 H 0.094 0.906
29 H 0.054 0.946
30 H 0.077 0.923
31 H 0.034 0.966
32 H 0.092 0.908
33 H 0.096 0.904
34 H 0.044 0.956
35 H 0.084 0.916
36 H 0.056 0.944
37 H 0.127 0.873
38 H 0.188 0.812
39 H 0.040 0.960
40 H 0.023 0.977
41 H 0.272 0.728
42 H 0.105 0.895
43 H 0.147 0.853
44 H 0.149 0.851
45 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.471 -1.807 19.583 22.767
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.326 6.326
3 C -0.035 4.035
4 C 0.039 3.961
5 N -0.369 5.369
6 C -0.068 4.068
7 N -0.060 5.060
8 C -0.108 4.108
9 C -0.171 4.171
10 C -0.049 4.049
11 N -0.140 5.140
12 C 0.132 3.868
13 C -0.591 4.591
14 H 0.069 0.931
15 C -0.179 4.179
16 N -0.557 5.557
17 Si 0.790 3.210
18 H -0.193 1.193
19 H -0.200 1.200
20 H -0.198 1.198
21 C -0.037 4.037
22 C -0.162 4.162
23 C -0.126 4.126
24 C -0.171 4.171
25 C -0.092 4.092
26 C -0.111 4.111
27 H 0.052 0.948
28 H 0.112 0.888
29 H 0.072 0.928
30 H 0.095 0.905
31 H 0.052 0.948
32 H 0.110 0.890
33 H 0.114 0.886
34 H 0.063 0.937
35 H 0.103 0.897
36 H 0.075 0.925
37 H 0.144 0.856
38 H 0.205 0.795
39 H 0.058 0.942
40 H 0.041 0.959
41 H 0.081 0.919
42 H 0.123 0.877
43 H 0.164 0.836
44 H 0.167 0.833
45 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -11.443 -1.272 19.689 22.809
hybrid contribution 0.813 -0.736 -1.151 1.590
sum -10.630 -2.008 18.538 21.464
Atomic orbital electron populations
1.22841 0.80236 1.03438 1.00275 1.87826 1.20778 1.28528 1.95504
1.23216 0.95081 0.84677 1.00516 1.21272 0.91136 1.00022 0.83664
1.50085 1.73720 1.02323 1.10749 1.21836 1.01490 0.81240 1.02257
1.74247 1.10036 1.24752 0.96987 1.23015 1.00628 0.96840 0.90269
1.18379 1.14478 0.90533 0.93749 1.22295 0.99165 0.93318 0.90088
1.44572 1.51658 1.04208 1.13596 1.19270 0.94198 0.97921 0.75374
1.21512 0.91659 1.52613 0.93288 0.93053 1.25715 1.03736 0.93816
0.94598 1.70000 1.37926 1.49406 0.98412 0.85427 0.78999 0.78798
0.77739 1.19319 1.20022 1.19844 1.18679 1.03610 0.88563 0.92856
1.20304 1.05135 0.89981 1.00802 1.21039 0.99341 0.98960 0.93279
1.20923 1.03094 0.96084 0.97038 1.20445 0.98527 0.91642 0.98574
1.19289 1.04979 0.93445 0.93396 0.94789 0.88768 0.92772 0.90477
0.94788 0.88961 0.88629 0.93740 0.89704 0.92502 0.85630 0.79485
0.94192 0.95934 0.91885 0.87700 0.83564 0.83289 0.85039
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.39 11.01 113.37 1.25 1.64 16
2 O -0.41 -7.80 9.08 -148.98 -1.35 -9.15 16
3 C 0.04 0.76 6.28 71.98 0.45 1.21 16
4 C 0.16 3.04 6.43 86.38 0.56 3.59 16
5 N -0.55 -13.68 3.85 -539.12 -2.08 -15.76 16
6 C 0.08 1.62 9.99 127.77 1.28 2.89 16
7 N -0.25 -7.78 10.27 -52.25 -0.54 -8.32 16
8 C 0.10 3.23 10.39 87.40 0.91 4.13 16
9 C -0.16 -6.01 6.27 -19.03 -0.12 -6.13 16
10 C 0.09 3.32 11.25 83.42 0.94 4.26 16
11 N -0.46 -20.98 2.75 -518.78 -1.43 -22.41 16
12 C 0.25 12.84 5.73 85.63 0.49 13.33 16
13 C -0.55 -30.34 9.39 25.60 0.24 -30.10 16
14 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16
15 C 0.02 1.20 5.46 84.66 0.46 1.67 16
16 N -0.92 -51.70 13.29 21.45 0.28 -51.41 16
17 Si 0.97 42.89 29.54 68.60 2.03 44.91 16
18 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16
19 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16
20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16
21 C 0.07 3.06 6.80 38.98 0.26 3.33 16
22 C -0.14 -5.77 9.98 22.38 0.22 -5.54 16
23 C -0.11 -3.49 10.01 22.29 0.22 -3.26 16
24 C -0.15 -4.60 9.98 22.04 0.22 -4.38 16
25 C -0.07 -2.52 9.77 22.18 0.22 -2.30 16
26 C -0.11 -4.22 6.26 -20.07 -0.13 -4.35 16
27 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16
28 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16
29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16
30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16
31 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16
32 H 0.09 1.41 8.11 -2.39 -0.02 1.39 16
33 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16
34 H 0.04 0.87 8.14 -2.39 -0.02 0.86 16
35 H 0.08 1.64 6.67 -2.39 -0.02 1.63 16
36 H 0.06 1.21 6.19 -2.39 -0.01 1.19 16
37 H 0.13 3.35 5.91 -2.91 -0.02 3.33 16
38 H 0.19 6.02 8.06 -2.91 -0.02 5.99 16
39 H 0.04 2.06 8.11 -2.39 -0.02 2.04 16
40 H 0.02 1.23 8.14 -2.38 -0.02 1.21 16
41 H 0.27 14.35 8.31 -92.71 -0.77 13.57 16
42 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16
43 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16
44 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16
45 H 0.13 4.15 7.24 -2.91 -0.02 4.13 16
Total: -1.00 -65.66 380.81 5.37 -60.29
By element:
Atomic # 1 Polarization: 20.87 SS G_CDS: 0.97 Total: 21.84 kcal
Atomic # 6 Polarization: -27.47 SS G_CDS: 7.48 Total: -20.00 kcal
Atomic # 7 Polarization: -94.14 SS G_CDS: -3.75 Total: -97.90 kcal
Atomic # 8 Polarization: -7.80 SS G_CDS: -1.35 Total: -9.15 kcal
Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal
Total: -65.66 5.37 -60.29 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000794971906.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 106.724 kcal
(2) G-P(sol) polarization free energy of solvation -65.660 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.064 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.366 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.294 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.430 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds