Wall clock time and date at job start Tue Mar 31 2020 11:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39289 * 125.81392 * 2 1 4 4 C 1.38663 * 133.34278 * 359.96603 * 3 2 1 5 5 C 1.38102 * 119.85122 * 180.02562 * 4 3 2 6 6 C 1.38435 * 120.28716 * 359.97438 * 5 4 3 7 7 C 1.38104 * 120.28173 * 0.03770 * 6 5 4 8 8 C 1.38663 * 119.84945 * 359.67573 * 7 6 5 9 9 N 1.39287 * 133.32625 * 179.57844 * 8 7 6 10 10 C 1.46499 * 125.82074 * 0.76672 * 9 8 7 11 11 N 1.46906 * 109.46698 * 269.71362 * 10 9 8 12 12 C 1.46844 * 110.99887 * 81.04615 * 11 10 9 13 13 C 1.53037 * 109.52152 * 174.16043 * 12 11 10 14 14 C 1.53124 * 109.28148 * 59.17731 * 13 12 11 15 15 C 1.53119 * 109.15796 * 302.35024 * 14 13 12 16 16 H 1.08999 * 109.50366 * 297.70667 * 15 14 13 17 17 C 1.50707 * 109.50248 * 177.63194 * 15 14 13 18 18 H 1.07994 * 120.00106 * 240.00008 * 17 15 14 19 19 C 1.37881 * 119.99638 * 59.99422 * 17 15 14 20 20 N 1.31514 * 120.00279 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99817 * 179.97438 * 19 17 15 22 22 H 1.48510 * 109.46964 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46898 * 120.00050 * 21 19 17 24 24 H 1.48488 * 109.47473 * 240.00512 * 21 19 17 25 25 C 1.46850 * 110.99915 * 316.83532 * 11 10 9 26 26 C 1.34632 * 125.82290 * 179.97438 * 2 1 3 27 27 O 1.21690 * 125.16109 * 0.03840 * 26 2 1 28 28 H 1.09000 * 109.46859 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47371 * 300.01813 * 1 2 3 30 30 H 1.09005 * 109.47026 * 60.01711 * 1 2 3 31 31 H 1.08003 * 120.07018 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.85307 * 179.97438 * 5 4 3 33 33 H 1.08004 * 119.85789 * 180.02562 * 6 5 4 34 34 H 1.07999 * 120.07597 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47267 * 149.71841 * 10 9 8 36 36 H 1.08997 * 109.47340 * 29.70979 * 10 9 8 37 37 H 1.08995 * 109.46267 * 294.17336 * 12 11 10 38 38 H 1.08993 * 109.46596 * 54.14593 * 12 11 10 39 39 H 1.08997 * 109.50540 * 179.12218 * 13 12 11 40 40 H 1.09000 * 109.50451 * 299.24129 * 13 12 11 41 41 H 1.09001 * 109.52004 * 62.24831 * 14 13 12 42 42 H 1.08999 * 109.52499 * 182.44152 * 14 13 12 43 43 H 0.96999 * 119.99980 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.46314 * 305.85713 * 25 11 10 45 45 H 1.08998 * 109.46244 * 65.82281 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.1295 0.0000 4 6 2.0192 2.4914 -0.0006 5 6 3.0663 3.3919 -0.0009 6 6 4.3751 2.9407 -0.0002 7 6 4.6448 1.5863 0.0002 8 6 3.6001 0.6745 0.0066 9 7 3.5463 -0.7173 0.0011 10 6 4.7001 -1.6200 0.0018 11 7 5.0864 -1.9219 -1.3831 12 6 5.9007 -0.8394 -1.9501 13 6 6.4047 -1.2506 -3.3354 14 6 5.2066 -1.5425 -4.2432 15 6 4.3488 -2.6392 -3.6061 16 1 4.9329 -3.5556 -3.5226 17 6 3.1362 -2.8919 -4.4645 18 1 2.1465 -2.7482 -4.0569 19 6 3.2904 -3.3066 -5.7704 20 7 4.4956 -3.4821 -6.2667 21 14 1.7874 -3.6206 -6.8343 22 1 0.5579 -3.3528 -6.0455 23 1 1.8217 -2.7229 -8.0167 24 1 1.7877 -5.0350 -7.2864 25 6 3.9044 -2.1878 -2.2130 26 6 2.2530 -1.0916 0.0005 27 8 1.8565 -2.2421 0.0003 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5141 0.8898 30 1 -0.3633 0.5136 -0.8902 31 1 0.9994 2.8471 -0.0016 32 1 2.8631 4.4526 -0.0018 33 1 5.1887 3.6511 0.0000 34 1 5.6671 1.2380 0.0004 35 1 4.4377 -2.5447 0.5156 36 1 5.5345 -1.1428 0.5158 37 1 5.2957 0.0630 -2.0369 38 1 6.7515 -0.6448 -1.2973 39 1 6.9961 -0.4408 -3.7626 40 1 7.0211 -2.1452 -3.2477 41 1 4.6110 -0.6374 -4.3625 42 1 5.5612 -1.8775 -5.2180 43 1 4.6041 -3.7735 -7.1855 44 1 3.3053 -2.9725 -1.7509 45 1 3.3087 -1.2790 -2.2984 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853526632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:00 Heat of formation + Delta-G solvation = 38.967776 kcal Electronic energy + Delta-G solvation = -27749.763127 eV Core-core repulsion = 24154.137406 eV Total energy + Delta-G solvation = -3595.625721 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.46817 -38.50109 -38.11420 -35.77346 -35.41041 -33.27599 -31.58894 -30.56711 -29.85327 -29.12873 -27.73485 -25.44632 -24.93761 -22.73906 -22.45023 -21.86544 -21.40645 -20.29206 -18.59442 -17.91620 -17.44691 -16.80238 -16.13942 -15.92779 -15.35870 -14.96298 -14.55786 -14.35084 -14.24173 -14.14863 -13.95702 -13.58103 -13.27942 -12.91439 -12.75436 -12.56414 -12.44593 -12.37131 -12.19349 -11.77727 -11.44675 -11.20676 -10.93849 -10.68119 -10.65517 -10.58855 -10.44635 -10.33475 -10.08689 -9.82543 -9.49240 -9.03921 -8.68161 -8.48965 -8.28403 -7.99777 -7.68834 -5.93997 -3.98976 1.15175 1.33285 2.25074 3.08554 3.27477 3.32417 3.40060 3.45365 3.65348 4.36797 4.44844 4.55635 4.69362 4.83573 5.00422 5.09112 5.16317 5.22457 5.36098 5.36633 5.46117 5.55176 5.58925 5.62780 5.67624 5.79704 5.99956 6.01671 6.18440 6.29678 6.38665 6.40563 6.52533 6.55141 6.57774 6.67371 6.73673 6.83423 7.01418 7.18195 7.32541 7.37972 7.55857 7.69125 7.80522 8.09996 8.19254 8.35580 8.52116 9.04591 9.64859 11.12274 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013599 B = 0.004923 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.456980 B = 5686.048523 C = 6383.822587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.546 5.546 3 C 0.090 3.910 4 C -0.107 4.107 5 C -0.116 4.116 6 C -0.113 4.113 7 C -0.105 4.105 8 C 0.098 3.902 9 N -0.555 5.555 10 C 0.286 3.714 11 N -0.531 5.531 12 C 0.055 3.945 13 C -0.117 4.117 14 C -0.110 4.110 15 C 0.055 3.945 16 H 0.034 0.966 17 C -0.509 4.509 18 H 0.052 0.948 19 C 0.063 3.937 20 N -0.890 5.890 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.283 1.283 25 C 0.071 3.929 26 C 0.683 3.317 27 O -0.544 6.544 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.031 0.969 38 H 0.058 0.942 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.028 0.972 42 H 0.092 0.908 43 H 0.258 0.742 44 H 0.071 0.929 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.620 14.465 14.715 20.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.268 5.268 3 C -0.012 4.012 4 C -0.128 4.128 5 C -0.136 4.136 6 C -0.133 4.133 7 C -0.127 4.127 8 C -0.004 4.004 9 N -0.280 5.280 10 C 0.077 3.923 11 N -0.255 5.255 12 C -0.073 4.073 13 C -0.154 4.154 14 C -0.148 4.148 15 C 0.036 3.964 16 H 0.052 0.948 17 C -0.548 4.548 18 H 0.070 0.930 19 C -0.138 4.138 20 N -0.529 5.529 21 Si 0.717 3.283 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.056 4.056 26 C 0.385 3.615 27 O -0.419 6.419 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.124 0.876 36 H 0.110 0.890 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -0.559 12.953 14.545 19.485 hybrid contribution -1.334 0.597 -0.731 1.634 sum -1.892 13.549 13.814 19.442 Atomic orbital electron populations 1.21709 0.75234 1.04941 1.02283 1.45050 1.07110 1.04701 1.69953 1.18108 0.88412 0.89311 1.05381 1.20013 1.00083 0.88608 1.04130 1.20787 0.91956 0.99131 1.01753 1.20808 0.96929 0.94204 1.01321 1.20086 0.97136 0.91807 1.03640 1.18192 0.94097 0.83980 1.04114 1.46542 1.07731 1.04915 1.68846 1.22824 0.84061 0.92119 0.93292 1.62635 1.21990 1.39558 1.01345 1.22220 0.95724 0.92177 0.97190 1.21670 0.99631 1.00148 0.93986 1.21654 0.94315 0.98173 1.00683 1.18682 0.95140 0.94553 0.87998 0.94798 1.21152 0.92451 1.44744 0.96408 0.92981 1.24912 0.95682 0.95364 0.97836 1.69897 1.20709 1.47234 1.15042 0.86580 0.83470 0.77854 0.80388 1.19892 1.21106 1.20956 1.22325 0.88835 0.98759 0.95636 1.16033 0.80833 0.84603 0.79989 1.91048 1.76478 1.16674 1.57669 0.88759 0.91199 0.90959 0.85618 0.85305 0.85239 0.85501 0.87646 0.89001 0.95068 0.92321 0.93361 0.91984 0.95352 0.88972 0.93167 0.91083 0.96358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.14 11.16 59.85 0.67 1.80 16 2 N -0.55 -8.33 3.18 -126.32 -0.40 -8.73 16 3 C 0.09 1.24 6.83 -83.80 -0.57 0.67 16 4 C -0.11 -1.15 10.02 -39.47 -0.40 -1.54 16 5 C -0.12 -1.07 10.03 -39.56 -0.40 -1.47 16 6 C -0.11 -1.08 10.03 -39.56 -0.40 -1.48 16 7 C -0.11 -1.23 8.94 -39.47 -0.35 -1.58 16 8 C 0.10 1.42 6.25 -83.80 -0.52 0.90 16 9 N -0.55 -9.13 2.11 -122.20 -0.26 -9.39 16 10 C 0.29 4.49 6.22 -63.31 -0.39 4.09 16 11 N -0.53 -10.02 4.88 -238.58 -1.17 -11.19 16 12 C 0.05 0.94 5.11 -3.84 -0.02 0.92 16 13 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 14 C -0.11 -2.68 5.02 -26.61 -0.13 -2.81 16 15 C 0.06 1.45 2.26 -91.69 -0.21 1.24 16 16 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 17 C -0.51 -14.72 8.57 -34.44 -0.29 -15.01 16 18 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.80 5.30 -17.82 -0.09 1.71 16 20 N -0.89 -25.99 11.35 55.43 0.63 -25.36 16 21 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 22 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 25 C 0.07 1.64 3.41 -3.83 -0.01 1.63 16 26 C 0.68 12.56 6.82 -87.17 -0.59 11.97 16 27 O -0.54 -11.72 15.93 5.20 0.08 -11.64 16 28 H 0.09 1.15 7.67 -51.93 -0.40 0.75 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 32 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 33 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 34 H 0.13 1.31 7.87 -52.49 -0.41 0.90 16 35 H 0.11 1.67 8.03 -51.93 -0.42 1.26 16 36 H 0.09 1.13 7.77 -51.93 -0.40 0.73 16 37 H 0.03 0.55 6.48 -51.93 -0.34 0.22 16 38 H 0.06 0.83 7.92 -51.93 -0.41 0.42 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 2.49 6.15 -51.93 -0.32 2.17 16 43 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.07 1.79 6.92 -51.93 -0.36 1.43 16 45 H 0.02 0.45 6.81 -51.93 -0.35 0.09 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -33.43 355.10 -11.43 -44.86 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.76 Total: 0.43 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -3.88 Total: -1.41 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -1.20 Total: -54.67 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.43 -11.43 -44.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853526632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.825 kcal (2) G-P(sol) polarization free energy of solvation -33.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds