Wall clock time and date at job start Tue Mar 31 2020 11:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35905 * 116.99842 * 2 1 4 4 C 1.38757 * 120.05461 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.93863 * 179.97438 * 4 3 2 6 6 C 1.38281 * 120.05977 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.94546 * 180.02562 * 6 5 4 8 8 N 1.46906 * 109.47140 * 89.99855 * 7 6 5 9 9 C 1.46898 * 110.99998 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47191 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47187 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99768 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00046 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99901 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00065 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47102 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46833 * 120.00409 * 15 13 11 18 18 H 1.48497 * 109.47372 * 240.00595 * 15 13 11 19 19 C 1.38240 * 120.11204 * 0.03917 * 6 5 4 20 20 C 1.38168 * 120.05486 * 359.68547 * 19 6 5 21 21 C 1.50701 * 120.02893 * 180.29770 * 20 19 6 22 22 N 1.46497 * 109.47090 * 265.27191 * 21 20 19 23 23 C 1.34950 * 126.04089 * 125.00014 * 22 21 20 24 24 C 1.35314 * 107.75173 * 179.97438 * 23 22 21 25 25 C 1.39875 * 107.91550 * 359.97438 * 24 23 22 26 26 N 1.30837 * 108.20290 * 359.74629 * 25 24 23 27 27 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47054 * 299.99727 * 1 2 3 29 29 H 1.09000 * 109.47187 * 59.99782 * 1 2 3 30 30 H 1.07997 * 120.02492 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.96887 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.47150 * 209.99897 * 7 6 5 33 33 H 1.09005 * 109.46894 * 329.99957 * 7 6 5 34 34 H 1.00896 * 111.00090 * 56.04363 * 8 7 6 35 35 H 1.09012 * 109.46762 * 299.99951 * 9 8 7 36 36 H 1.08997 * 109.47735 * 59.99529 * 9 8 7 37 37 H 1.08998 * 109.46850 * 299.99437 * 10 9 8 38 38 H 1.09003 * 109.47313 * 59.99535 * 10 9 8 39 39 H 0.97007 * 120.00122 * 179.97438 * 14 13 11 40 40 H 1.07998 * 119.97629 * 179.97438 * 19 6 5 41 41 H 1.09000 * 109.47442 * 25.27129 * 21 20 19 42 42 H 1.09002 * 109.47114 * 145.27058 * 21 20 19 43 43 H 1.08004 * 126.12043 * 359.95387 * 23 22 21 44 44 H 1.07993 * 126.04010 * 180.02562 * 24 23 22 45 45 H 1.08001 * 125.89506 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 7 4.2078 5.4540 1.3882 9 6 4.8739 6.7626 1.4285 10 6 5.0880 7.1813 2.8844 11 6 5.7719 8.5236 2.9258 12 1 6.0286 9.0273 2.0057 13 6 6.0699 9.1084 4.1383 14 7 5.7577 8.4946 5.2587 15 14 6.9182 10.7718 4.1896 16 1 7.1602 11.2470 2.8036 17 1 6.0540 11.7464 4.9028 18 1 8.2144 10.6447 4.9030 19 6 4.0559 2.5172 0.0008 20 6 3.4311 1.2849 0.0060 21 6 4.2537 0.0222 0.0119 22 7 4.4254 -0.4551 -1.3624 23 6 5.6013 -0.7120 -1.9727 24 6 5.3305 -1.1320 -3.2302 25 6 3.9413 -1.1322 -3.3939 26 7 3.3976 -0.7322 -2.2731 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2128 2.3203 0.0014 31 1 1.3340 4.5114 0.0019 32 1 4.9441 4.9386 -0.5107 33 1 3.3581 5.7467 -0.5108 34 1 4.7333 4.7643 1.9042 35 1 5.8383 6.6951 0.9247 36 1 4.2520 7.5027 0.9249 37 1 4.1239 7.2487 3.3885 38 1 5.7102 6.4412 3.3877 39 1 5.9676 8.9059 6.1119 40 1 5.1344 2.5753 0.0008 41 1 5.2305 0.2270 0.4501 42 1 3.7442 -0.7406 0.6006 43 1 6.5828 -0.6018 -1.5357 44 1 6.0582 -1.4173 -3.9753 45 1 3.4093 -1.4180 -4.2893 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873104486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:59 Heat of formation + Delta-G solvation = 62.245168 kcal Electronic energy + Delta-G solvation = -25004.315882 eV Core-core repulsion = 21409.699545 eV Total energy + Delta-G solvation = -3594.616337 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.25578 -40.26961 -37.96166 -35.81909 -34.27110 -32.97687 -31.09796 -30.96285 -29.97134 -28.86120 -27.58430 -26.37995 -25.07012 -23.24446 -22.40634 -21.30475 -21.03273 -20.64864 -20.18052 -18.15569 -17.30404 -16.65774 -16.32822 -15.87978 -15.70040 -15.05298 -14.90056 -14.48698 -14.32947 -14.27815 -14.12741 -14.00224 -13.69301 -13.15446 -12.97075 -12.78397 -12.58385 -12.45437 -12.24391 -12.08783 -11.92848 -11.28334 -11.10950 -11.06911 -10.95522 -10.92157 -10.67087 -10.52550 -10.01742 -9.51039 -9.41934 -9.15806 -9.06024 -8.68571 -8.36927 -8.16965 -7.80626 -6.00918 -4.03556 1.10277 1.34964 1.84813 2.53577 2.77178 3.14763 3.30253 3.37646 3.41641 3.66681 4.26660 4.43842 4.48349 4.70417 4.72992 4.81141 4.89441 4.98801 4.99501 5.07048 5.10826 5.18030 5.28722 5.34917 5.35228 5.46418 5.51099 5.58598 5.65792 5.86071 5.88934 5.93560 6.19706 6.22827 6.32519 6.36959 6.55165 6.63211 6.66731 6.90446 6.95858 7.26344 7.44901 7.65335 7.71488 7.80632 7.93481 8.07103 8.42219 9.03995 9.60349 11.10507 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018719 B = 0.002315 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.438527 B =12093.737012 C =12955.620881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.304 6.304 3 C 0.160 3.840 4 C -0.215 4.215 5 C -0.045 4.045 6 C -0.113 4.113 7 C 0.100 3.900 8 N -0.686 5.686 9 C 0.065 3.935 10 C 0.025 3.975 11 C -0.521 4.521 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.893 5.893 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.057 4.057 20 C -0.150 4.150 21 C 0.186 3.814 22 N -0.361 5.361 23 C 0.048 3.952 24 C -0.279 4.279 25 C 0.031 3.969 26 N -0.275 5.275 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.031 0.969 33 H 0.075 0.925 34 H 0.336 0.664 35 H 0.015 0.985 36 H 0.059 0.941 37 H 0.025 0.975 38 H 0.013 0.987 39 H 0.260 0.740 40 H 0.125 0.875 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.171 0.829 44 H 0.143 0.857 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.420 -21.636 -14.820 27.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.216 6.216 3 C 0.113 3.887 4 C -0.233 4.233 5 C -0.064 4.064 6 C -0.114 4.114 7 C -0.029 4.029 8 N -0.317 5.317 9 C -0.063 4.063 10 C -0.012 4.012 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.532 5.532 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.076 4.076 20 C -0.152 4.152 21 C 0.066 3.934 22 N -0.144 5.144 23 C -0.098 4.098 24 C -0.308 4.308 25 C -0.156 4.156 26 N -0.096 5.096 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.154 0.846 35 H 0.034 0.966 36 H 0.077 0.923 37 H 0.044 0.956 38 H 0.032 0.968 39 H 0.070 0.930 40 H 0.143 0.857 41 H 0.121 0.879 42 H 0.113 0.887 43 H 0.188 0.812 44 H 0.161 0.839 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.059 -21.244 -13.793 26.580 hybrid contribution 1.921 0.714 -0.576 2.129 sum -6.138 -20.530 -14.369 25.800 Atomic orbital electron populations 1.23016 0.78668 1.03673 1.01190 1.86112 1.21020 1.26449 1.88041 1.18695 0.91397 0.84343 0.94253 1.21214 0.99995 0.92241 1.09894 1.20913 0.94051 0.97059 0.94334 1.19758 0.93711 0.94841 1.03044 1.20815 0.97984 0.92298 0.91786 1.60650 1.54626 1.05696 1.10746 1.22188 0.94510 0.88138 1.01438 1.19070 0.97358 0.95741 0.89055 1.21213 1.38537 1.03955 0.92285 0.92699 1.25009 0.95952 0.97724 0.95735 1.69985 1.47520 1.38422 0.97305 0.86531 0.79253 0.84123 0.78054 1.19767 1.20967 1.21021 1.20762 0.99552 0.90615 0.96652 1.18935 0.90763 0.94524 1.10948 1.20369 1.00780 0.93999 0.78301 1.48857 1.03708 1.50141 1.11667 1.22587 0.91634 1.01089 0.94474 1.21465 0.96244 1.15335 0.97788 1.23887 0.93965 1.00542 0.97177 1.77489 1.12437 1.20196 0.99487 0.88510 0.92790 0.92744 0.85406 0.85389 0.95102 0.90609 0.84613 0.96627 0.92283 0.95637 0.96821 0.93038 0.85690 0.87903 0.88733 0.81194 0.83921 0.80552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.30 -3.51 9.63 -19.44 -0.19 -3.69 16 3 C 0.16 1.96 6.66 -39.22 -0.26 1.70 16 4 C -0.21 -2.54 9.04 -39.43 -0.36 -2.89 16 5 C -0.04 -0.57 9.69 -39.61 -0.38 -0.95 16 6 C -0.11 -1.51 5.39 -104.60 -0.56 -2.07 16 7 C 0.10 1.46 5.81 -4.97 -0.03 1.43 16 8 N -0.69 -12.20 6.49 -115.05 -0.75 -12.95 16 9 C 0.07 1.37 5.62 -3.83 -0.02 1.34 16 10 C 0.03 0.66 5.23 -27.88 -0.15 0.51 16 11 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 12 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 15 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 19 C -0.06 -0.69 9.33 -39.61 -0.37 -1.06 16 20 C -0.15 -1.79 5.33 -104.47 -0.56 -2.35 16 21 C 0.19 1.85 6.36 -5.19 -0.03 1.81 16 22 N -0.36 -4.04 3.67 -62.55 -0.23 -4.27 16 23 C 0.05 0.45 11.45 -17.22 -0.20 0.25 16 24 C -0.28 -2.61 10.80 -40.01 -0.43 -3.04 16 25 C 0.03 0.32 12.03 -17.36 -0.21 0.11 16 26 N -0.27 -3.52 12.41 30.63 0.38 -3.14 16 27 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 29 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 30 H 0.13 1.23 6.30 -52.49 -0.33 0.90 16 31 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 32 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 34 H 0.34 5.82 8.72 -39.29 -0.34 5.48 16 35 H 0.02 0.32 8.14 -51.92 -0.42 -0.10 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.10 0.74 7.98 -51.93 -0.41 0.32 16 42 H 0.09 0.93 7.69 -51.93 -0.40 0.53 16 43 H 0.17 1.01 8.06 -52.48 -0.42 0.58 16 44 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 45 H 0.18 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 382.72 15.07 5.77 5.77 Total: -1.00 -33.87 382.72 -9.17 -43.04 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.89 Total: 2.37 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -2.98 Total: -17.54 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.14 Total: -46.57 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: -0.19 Total: -3.69 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.87 -9.17 -43.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873104486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.282 kcal (2) G-P(sol) polarization free energy of solvation -33.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds