Wall clock time and date at job start Tue Mar 31 2020 11:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35905 * 116.99842 * 2 1 4 4 C 1.38757 * 120.05461 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.93863 * 179.97438 * 4 3 2 6 6 C 1.38281 * 120.05977 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.94546 * 180.02562 * 6 5 4 8 8 N 1.46906 * 109.47140 * 89.99855 * 7 6 5 9 9 C 1.46898 * 110.99998 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47191 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47187 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99768 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00046 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99901 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00065 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47102 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46833 * 120.00409 * 15 13 11 18 18 H 1.48497 * 109.47372 * 240.00595 * 15 13 11 19 19 C 1.38240 * 120.11204 * 0.03917 * 6 5 4 20 20 C 1.38168 * 120.05486 * 359.68547 * 19 6 5 21 21 C 1.50701 * 120.02893 * 180.29770 * 20 19 6 22 22 N 1.46497 * 109.47090 * 265.27191 * 21 20 19 23 23 C 1.34950 * 126.04089 * 125.00014 * 22 21 20 24 24 C 1.35314 * 107.75173 * 179.97438 * 23 22 21 25 25 C 1.39875 * 107.91550 * 359.97438 * 24 23 22 26 26 N 1.30837 * 108.20290 * 359.74629 * 25 24 23 27 27 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47054 * 299.99727 * 1 2 3 29 29 H 1.09000 * 109.47187 * 59.99782 * 1 2 3 30 30 H 1.07997 * 120.02492 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.96887 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.47150 * 209.99897 * 7 6 5 33 33 H 1.09005 * 109.46894 * 329.99957 * 7 6 5 34 34 H 1.00896 * 111.00090 * 56.04363 * 8 7 6 35 35 H 1.09012 * 109.46762 * 299.99951 * 9 8 7 36 36 H 1.08997 * 109.47735 * 59.99529 * 9 8 7 37 37 H 1.08998 * 109.46850 * 299.99437 * 10 9 8 38 38 H 1.09003 * 109.47313 * 59.99535 * 10 9 8 39 39 H 0.97007 * 120.00122 * 179.97438 * 14 13 11 40 40 H 1.07998 * 119.97629 * 179.97438 * 19 6 5 41 41 H 1.09000 * 109.47442 * 25.27129 * 21 20 19 42 42 H 1.09002 * 109.47114 * 145.27058 * 21 20 19 43 43 H 1.08004 * 126.12043 * 359.95387 * 23 22 21 44 44 H 1.07993 * 126.04010 * 180.02562 * 24 23 22 45 45 H 1.08001 * 125.89506 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 7 4.2078 5.4540 1.3882 9 6 4.8739 6.7626 1.4285 10 6 5.0880 7.1813 2.8844 11 6 5.7719 8.5236 2.9258 12 1 6.0286 9.0273 2.0057 13 6 6.0699 9.1084 4.1383 14 7 5.7577 8.4946 5.2587 15 14 6.9182 10.7718 4.1896 16 1 7.1602 11.2470 2.8036 17 1 6.0540 11.7464 4.9028 18 1 8.2144 10.6447 4.9030 19 6 4.0559 2.5172 0.0008 20 6 3.4311 1.2849 0.0060 21 6 4.2537 0.0222 0.0119 22 7 4.4254 -0.4551 -1.3624 23 6 5.6013 -0.7120 -1.9727 24 6 5.3305 -1.1320 -3.2302 25 6 3.9413 -1.1322 -3.3939 26 7 3.3976 -0.7322 -2.2731 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2128 2.3203 0.0014 31 1 1.3340 4.5114 0.0019 32 1 4.9441 4.9386 -0.5107 33 1 3.3581 5.7467 -0.5108 34 1 4.7333 4.7643 1.9042 35 1 5.8383 6.6951 0.9247 36 1 4.2520 7.5027 0.9249 37 1 4.1239 7.2487 3.3885 38 1 5.7102 6.4412 3.3877 39 1 5.9676 8.9059 6.1119 40 1 5.1344 2.5753 0.0008 41 1 5.2305 0.2270 0.4501 42 1 3.7442 -0.7406 0.6006 43 1 6.5828 -0.6018 -1.5357 44 1 6.0582 -1.4173 -3.9753 45 1 3.4093 -1.4180 -4.2893 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873104486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:58 Heat of formation + Delta-G solvation = 41.059628 kcal Electronic energy + Delta-G solvation = -25005.234556 eV Core-core repulsion = 21409.699545 eV Total energy + Delta-G solvation = -3595.535011 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.00451 -41.12553 -38.91836 -37.22477 -35.34578 -34.77561 -32.47344 -31.82888 -30.75220 -30.33418 -28.41527 -27.24198 -26.59849 -24.80355 -23.26419 -22.47552 -22.12223 -21.77682 -21.12310 -18.99383 -18.50770 -18.02808 -17.55862 -16.99269 -16.55818 -16.41767 -16.14010 -15.76723 -15.51809 -15.31016 -15.12400 -14.91099 -14.50488 -14.40818 -14.19393 -13.95625 -13.64098 -13.54143 -13.36002 -13.12362 -13.02800 -12.85443 -12.71868 -12.48327 -12.24309 -11.97782 -11.89575 -11.80237 -11.42822 -11.39841 -11.23814 -10.57051 -10.28864 -9.96958 -9.42611 -9.33458 -9.01805 -8.20302 -6.31762 0.20180 0.39968 1.12229 1.40702 1.41193 1.54468 1.80334 2.05476 2.38286 2.40598 2.72683 3.13218 3.43779 3.60946 3.70133 3.86158 3.98089 4.13512 4.14269 4.26052 4.30750 4.38599 4.39047 4.46429 4.48653 4.52921 4.64451 4.67425 4.72469 4.78118 4.80004 4.97202 5.01273 5.07529 5.22317 5.28299 5.32183 5.44875 5.64327 5.67552 5.75277 5.79013 5.84522 6.13052 6.23142 6.26518 6.43479 6.52531 6.85953 6.90918 7.37640 8.91987 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018719 B = 0.002315 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.438527 B =12093.737012 C =12955.620881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.317 6.317 3 C 0.152 3.848 4 C -0.219 4.219 5 C -0.057 4.057 6 C -0.129 4.129 7 C 0.107 3.893 8 N -0.692 5.692 9 C 0.084 3.916 10 C 0.032 3.968 11 C -0.543 4.543 12 H 0.061 0.939 13 C -0.001 4.001 14 N -0.932 5.932 15 Si 0.967 3.033 16 H -0.261 1.261 17 H -0.279 1.279 18 H -0.277 1.277 19 C -0.058 4.058 20 C -0.157 4.157 21 C 0.185 3.815 22 N -0.371 5.371 23 C 0.047 3.953 24 C -0.288 4.288 25 C 0.022 3.978 26 N -0.318 5.318 27 H 0.114 0.886 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.146 0.854 31 H 0.132 0.868 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.339 0.661 35 H 0.022 0.978 36 H 0.059 0.941 37 H -0.007 1.007 38 H -0.008 1.008 39 H 0.264 0.736 40 H 0.140 0.860 41 H 0.131 0.869 42 H 0.090 0.910 43 H 0.203 0.797 44 H 0.164 0.836 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.546 -21.813 -15.925 27.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.230 6.230 3 C 0.105 3.895 4 C -0.238 4.238 5 C -0.076 4.076 6 C -0.129 4.129 7 C -0.022 4.022 8 N -0.323 5.323 9 C -0.045 4.045 10 C -0.006 4.006 11 C -0.581 4.581 12 H 0.079 0.921 13 C -0.198 4.198 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.185 1.185 17 H -0.204 1.204 18 H -0.203 1.203 19 C -0.077 4.077 20 C -0.158 4.158 21 C 0.065 3.935 22 N -0.154 5.154 23 C -0.099 4.099 24 C -0.318 4.318 25 C -0.164 4.164 26 N -0.140 5.140 27 H 0.133 0.867 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.164 0.836 31 H 0.150 0.850 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.156 0.844 35 H 0.040 0.960 36 H 0.077 0.923 37 H 0.011 0.989 38 H 0.010 0.990 39 H 0.072 0.928 40 H 0.158 0.842 41 H 0.149 0.851 42 H 0.109 0.891 43 H 0.220 0.780 44 H 0.181 0.819 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -7.197 -21.438 -14.921 27.093 hybrid contribution 1.586 0.642 -0.256 1.730 sum -5.611 -20.796 -15.178 26.350 Atomic orbital electron populations 1.23253 0.77024 1.05131 1.01812 1.86101 1.22807 1.26202 1.87850 1.18931 0.91922 0.84742 0.93924 1.21418 1.01033 0.91829 1.09516 1.21054 0.94114 0.97680 0.94703 1.19696 0.94043 0.94485 1.04706 1.20778 0.98605 0.93107 0.89669 1.60548 1.54043 1.04558 1.13152 1.21798 0.95140 0.89850 0.97710 1.18919 0.94890 0.94803 0.91956 1.21646 1.38755 1.04996 0.92747 0.92084 1.25984 0.96592 1.01990 0.95279 1.70118 1.48638 1.40423 0.98034 0.85368 0.78054 0.78823 0.78596 1.18530 1.20432 1.20286 1.20924 1.00293 0.90352 0.96168 1.19202 0.91097 0.95256 1.10276 1.20484 1.01956 0.92909 0.78193 1.48938 1.04031 1.50565 1.11829 1.23198 0.92332 0.99878 0.94479 1.21815 0.96171 1.15282 0.98486 1.24368 0.94944 0.99776 0.97332 1.77427 1.13990 1.21975 1.00621 0.86746 0.91880 0.92331 0.83638 0.85019 0.94150 0.90486 0.84373 0.96022 0.92275 0.98861 0.98983 0.92752 0.84242 0.85095 0.89148 0.78018 0.81880 0.78676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.32 -7.14 9.63 -92.49 -0.89 -8.03 16 3 C 0.15 3.65 6.66 22.51 0.15 3.80 16 4 C -0.22 -5.06 9.04 22.37 0.20 -4.86 16 5 C -0.06 -1.42 9.69 22.25 0.22 -1.21 16 6 C -0.13 -3.35 5.39 -19.85 -0.11 -3.46 16 7 C 0.11 3.02 5.81 85.56 0.50 3.52 16 8 N -0.69 -24.46 6.49 -517.91 -3.36 -27.83 16 9 C 0.08 3.50 5.62 86.30 0.49 3.98 16 10 C 0.03 1.70 5.23 29.85 0.16 1.86 16 11 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 12 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 13 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 14 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 15 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 16 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 19 C -0.06 -1.36 9.33 22.25 0.21 -1.15 16 20 C -0.16 -3.61 5.33 -19.77 -0.11 -3.71 16 21 C 0.18 3.44 6.36 85.63 0.54 3.99 16 22 N -0.37 -7.81 3.67 -351.80 -1.29 -9.10 16 23 C 0.05 0.77 11.45 83.54 0.96 1.73 16 24 C -0.29 -4.87 10.80 21.99 0.24 -4.63 16 25 C 0.02 0.43 12.03 85.24 1.03 1.46 16 26 N -0.32 -7.95 12.41 -57.02 -0.71 -8.65 16 27 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 0.82 7.66 -2.38 -0.02 0.80 16 29 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 30 H 0.15 2.67 6.30 -2.91 -0.02 2.65 16 31 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 32 H 0.04 1.07 8.08 -2.39 -0.02 1.06 16 33 H 0.08 2.15 8.08 -2.38 -0.02 2.13 16 34 H 0.34 11.71 8.72 -89.70 -0.78 10.92 16 35 H 0.02 0.87 8.14 -2.38 -0.02 0.86 16 36 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 37 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 40 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 41 H 0.13 1.59 7.98 -2.39 -0.02 1.57 16 42 H 0.09 1.73 7.69 -2.39 -0.02 1.71 16 43 H 0.20 1.75 8.06 -2.91 -0.02 1.73 16 44 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 45 H 0.20 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -73.23 382.72 2.53 -70.70 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.20 Total: 21.05 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: 6.27 Total: -27.62 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -5.07 Total: -102.35 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.89 Total: -8.03 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -73.23 2.53 -70.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873104486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.759 kcal (2) G-P(sol) polarization free energy of solvation -73.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds