Wall clock time and date at job start Tue Mar 31 2020 11:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00572 * 2 1 4 4 O 1.20835 * 119.99735 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00487 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.47380 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.47262 * 179.97438 * 6 5 3 8 8 H 1.09002 * 109.50520 * 54.91891 * 7 6 5 9 9 C 1.53121 * 109.50365 * 294.79850 * 7 6 5 10 10 C 1.53123 * 109.16130 * 182.40408 * 9 7 6 11 11 C 1.53028 * 109.27662 * 57.65906 * 10 9 7 12 12 N 1.46847 * 109.52467 * 300.81663 * 11 10 9 13 13 C 1.46895 * 111.00172 * 185.83928 * 12 11 10 14 14 C 1.52998 * 109.47051 * 45.79283 * 13 12 11 15 15 C 1.53001 * 109.47115 * 179.97438 * 14 13 12 16 16 S 1.81008 * 109.47144 * 179.97438 * 15 14 13 17 17 C 1.76200 * 100.00135 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99856 * 0.02562 * 17 16 15 19 19 C 1.38788 * 120.00157 * 180.02562 * 17 16 15 20 20 N 1.31630 * 119.99975 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00202 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47147 * 60.00244 * 21 19 17 23 23 H 1.48500 * 109.47289 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47211 * 300.00106 * 21 19 17 25 25 C 1.46848 * 111.19612 * 61.74251 * 12 11 10 26 26 H 1.09002 * 109.47379 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46782 * 60.00258 * 1 2 3 28 28 H 1.09004 * 109.47085 * 300.00378 * 1 2 3 29 29 H 1.09003 * 109.46714 * 299.99382 * 5 3 2 30 30 H 1.08995 * 109.47205 * 59.99484 * 5 3 2 31 31 H 1.09003 * 109.46859 * 300.00043 * 6 5 3 32 32 H 1.09003 * 109.47093 * 59.99395 * 6 5 3 33 33 H 1.08993 * 109.52897 * 302.31346 * 9 7 6 34 34 H 1.09004 * 109.51860 * 62.50322 * 9 7 6 35 35 H 1.08994 * 109.50344 * 297.71458 * 10 9 7 36 36 H 1.08998 * 109.53145 * 177.61710 * 10 9 7 37 37 H 1.09000 * 109.46507 * 180.80469 * 11 10 9 38 38 H 1.09005 * 109.46652 * 60.83651 * 11 10 9 39 39 H 1.09008 * 109.47458 * 165.78920 * 13 12 11 40 40 H 1.08996 * 109.47453 * 285.79470 * 13 12 11 41 41 H 1.08994 * 109.47212 * 299.99911 * 14 13 12 42 42 H 1.09001 * 109.47358 * 60.00320 * 14 13 12 43 43 H 1.08996 * 109.47849 * 300.00255 * 15 14 13 44 44 H 1.09005 * 109.46891 * 60.00212 * 15 14 13 45 45 H 0.97005 * 119.99879 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.46535 * 178.24158 * 25 12 11 47 47 H 1.09006 * 109.45187 * 58.27272 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0003 2.7420 -0.0011 7 6 5.5281 2.8220 -0.0011 8 1 5.9225 2.2510 -0.8416 9 6 6.0702 2.2446 1.3094 10 6 7.5950 2.3833 1.3270 11 6 7.9701 3.8577 1.1623 12 7 7.4294 4.3630 -0.1061 13 6 7.8862 5.7351 -0.3638 14 6 9.3883 5.8324 -0.0899 15 6 9.8643 7.2614 -0.3590 16 16 11.6412 7.3768 -0.0342 17 6 11.9117 9.0763 -0.4123 18 1 11.0875 9.6959 -0.7335 19 6 13.1840 9.6189 -0.2973 20 7 14.1886 8.8637 0.0938 21 14 13.4706 11.4210 -0.6974 22 1 12.6385 12.2651 0.1972 23 1 14.9044 11.7508 -0.4957 24 1 13.0968 11.6797 -2.1110 25 6 5.9632 4.2837 -0.1273 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 3.9564 0.7805 0.8892 30 1 3.9557 0.7807 -0.8907 31 1 3.6102 3.2358 -0.8911 32 1 3.6108 3.2363 0.8889 33 1 5.6451 2.7906 2.1515 34 1 5.7994 1.1913 1.3830 35 1 8.0225 1.8053 0.5078 36 1 7.9838 2.0127 2.2755 37 1 9.0555 3.9584 1.1600 38 1 7.5540 4.4331 1.9893 39 1 7.6891 5.9944 -1.4041 40 1 7.3523 6.4247 0.2900 41 1 9.5856 5.5732 0.9502 42 1 9.9223 5.1429 -0.7438 43 1 9.6671 7.5204 -1.3992 44 1 9.3303 7.9513 0.2946 45 1 15.0779 9.2428 0.1738 46 1 5.5909 4.6937 -1.0662 47 1 5.5566 4.8570 0.7059 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880040695.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:54 Heat of formation + Delta-G solvation = -115.572680 kcal Electronic energy + Delta-G solvation = -23386.524615 eV Core-core repulsion = 19887.348717 eV Total energy + Delta-G solvation = -3499.175898 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.89002 -39.46586 -37.07051 -35.85088 -33.37027 -32.41714 -31.67223 -30.37192 -28.05847 -26.24306 -25.53371 -25.04895 -22.98779 -22.42444 -21.00292 -20.10728 -19.82224 -17.98352 -17.45333 -17.05657 -16.95879 -15.98378 -15.27648 -15.24936 -14.81010 -14.78994 -14.49050 -14.16623 -14.08228 -13.75962 -13.66774 -13.11829 -12.95541 -12.86589 -12.64100 -12.27856 -12.21428 -12.00272 -11.60982 -11.56151 -11.27513 -11.24271 -11.13087 -11.04421 -10.90891 -10.84742 -10.77610 -10.70209 -10.47936 -10.33158 -10.12844 -9.49870 -9.03505 -8.28843 -8.26350 -6.50872 -6.21009 -3.91197 1.80495 2.29686 3.22903 3.24487 3.28948 3.55491 3.90448 4.24406 4.25816 4.41647 4.50174 4.65458 4.69600 4.71529 4.77703 4.84751 5.03471 5.07760 5.14882 5.17765 5.24900 5.30193 5.33270 5.38715 5.42645 5.47904 5.52633 5.61943 5.64720 5.75320 5.79038 5.79440 5.92386 5.93677 5.97244 6.00996 6.05924 6.20407 6.26076 6.35745 6.61023 6.75702 7.13205 7.14777 7.33329 7.61946 8.38152 9.25183 10.87114 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.042461 B = 0.001741 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.274550 B =16083.156817 C =16595.362497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.507 6.507 5 C -0.113 4.113 6 C -0.104 4.104 7 C -0.083 4.083 8 H 0.083 0.917 9 C -0.119 4.119 10 C -0.117 4.117 11 C 0.045 3.955 12 N -0.537 5.537 13 C 0.061 3.939 14 C -0.100 4.100 15 C -0.113 4.113 16 S -0.133 6.133 17 C -0.517 4.517 18 H 0.071 0.929 19 C 0.071 3.929 20 N -0.870 5.870 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.061 3.939 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.031 0.969 39 H 0.074 0.926 40 H 0.031 0.969 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.267 0.733 46 H 0.074 0.926 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.891 -19.181 1.243 30.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.302 3.698 4 O -0.395 6.395 5 C -0.151 4.151 6 C -0.142 4.142 7 C -0.102 4.102 8 H 0.101 0.899 9 C -0.157 4.157 10 C -0.155 4.155 11 C -0.083 4.083 12 N -0.261 5.261 13 C -0.068 4.068 14 C -0.139 4.139 15 C -0.262 4.262 16 S 0.096 5.904 17 C -0.665 4.665 18 H 0.090 0.910 19 C -0.137 4.137 20 N -0.506 5.506 21 Si 0.744 3.256 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.067 4.067 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.049 0.951 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.092 0.908 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -23.000 -19.968 1.260 30.485 hybrid contribution -1.235 2.714 -0.004 2.982 sum -24.236 -17.254 1.256 29.777 Atomic orbital electron populations 1.23269 0.76321 1.03714 1.02601 1.86514 1.23517 1.33744 1.84170 1.23999 0.92495 0.81223 0.72119 1.90688 1.67366 1.36352 1.45079 1.21497 0.86820 1.00603 1.06153 1.21458 0.95377 0.93435 1.03900 1.21188 0.93331 0.96723 0.98945 0.89857 1.21726 0.96187 1.00621 0.97133 1.21587 0.95411 0.96479 1.01984 1.22260 1.01248 0.94961 0.89809 1.61968 1.08320 1.22291 1.33546 1.22180 0.96078 0.87476 1.01102 1.21438 0.93610 0.96547 1.02293 1.23236 1.02360 0.97846 1.02746 1.84596 1.00588 1.16339 1.88919 1.22654 0.97202 0.94265 1.52398 0.91037 1.25004 0.95060 0.98925 0.94753 1.70016 1.00411 1.35921 1.44202 0.86231 0.77325 0.82983 0.79025 1.19979 1.20810 1.19933 1.22066 0.87996 0.95669 1.00956 0.88075 0.91864 0.91895 0.87389 0.87409 0.90764 0.91003 0.92215 0.91784 0.91003 0.91569 0.89383 0.95105 0.90711 0.95059 0.91390 0.90717 0.92075 0.92379 0.92278 0.90799 0.94971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.25 16 2 O -0.36 -2.79 10.56 -39.24 -0.41 -3.21 16 3 C 0.46 3.90 7.96 36.00 0.29 4.19 16 4 O -0.51 -5.86 15.73 -18.76 -0.30 -6.16 16 5 C -0.11 -0.67 5.57 -27.88 -0.16 -0.83 16 6 C -0.10 -0.76 3.97 -26.73 -0.11 -0.87 16 7 C -0.08 -0.66 2.35 -90.54 -0.21 -0.87 16 8 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 9 C -0.12 -0.91 4.98 -26.61 -0.13 -1.04 16 10 C -0.12 -1.06 6.09 -26.65 -0.16 -1.22 16 11 C 0.04 0.52 4.85 -3.84 -0.02 0.50 16 12 N -0.54 -6.52 4.81 -234.67 -1.13 -7.65 16 13 C 0.06 0.83 5.27 -3.83 -0.02 0.81 16 14 C -0.10 -1.65 4.47 -26.73 -0.12 -1.77 16 15 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 16 S -0.13 -3.50 21.44 -107.50 -2.30 -5.80 16 17 C -0.52 -14.98 9.50 30.94 0.29 -14.68 16 18 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 19 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 20 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 21 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 C 0.06 0.62 4.71 -3.83 -0.02 0.61 16 26 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 28 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 29 H 0.11 0.49 6.63 -51.93 -0.34 0.15 16 30 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.38 6.70 -51.93 -0.35 0.03 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.11 5.81 -51.93 -0.30 0.81 16 38 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 40 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 41 H 0.07 1.12 6.21 -51.93 -0.32 0.79 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 44 H 0.06 1.18 8.14 -51.91 -0.42 0.76 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 47 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 385.92 15.07 5.82 5.82 Total: -1.00 -33.03 385.92 -10.26 -43.29 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -8.46 Total: -3.49 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 0.82 Total: -14.06 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: -0.39 Total: -33.05 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -0.71 Total: -9.36 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -2.30 Total: -5.80 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.03 -10.26 -43.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880040695.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.283 kcal (2) G-P(sol) polarization free energy of solvation -33.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds