Wall clock time and date at job start Tue Mar 31 2020 11:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00572 * 2 1 4 4 O 1.20835 * 119.99735 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00487 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.47380 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.47262 * 179.97438 * 6 5 3 8 8 H 1.09002 * 109.50520 * 54.91891 * 7 6 5 9 9 C 1.53121 * 109.50365 * 294.79850 * 7 6 5 10 10 C 1.53123 * 109.16130 * 182.40408 * 9 7 6 11 11 C 1.53028 * 109.27662 * 57.65906 * 10 9 7 12 12 N 1.46847 * 109.52467 * 300.81663 * 11 10 9 13 13 C 1.46895 * 111.00172 * 185.83928 * 12 11 10 14 14 C 1.52998 * 109.47051 * 45.79283 * 13 12 11 15 15 C 1.53001 * 109.47115 * 179.97438 * 14 13 12 16 16 S 1.81008 * 109.47144 * 179.97438 * 15 14 13 17 17 C 1.76200 * 100.00135 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99856 * 0.02562 * 17 16 15 19 19 C 1.38788 * 120.00157 * 180.02562 * 17 16 15 20 20 N 1.31630 * 119.99975 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00202 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47147 * 60.00244 * 21 19 17 23 23 H 1.48500 * 109.47289 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47211 * 300.00106 * 21 19 17 25 25 C 1.46848 * 111.19612 * 61.74251 * 12 11 10 26 26 H 1.09002 * 109.47379 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46782 * 60.00258 * 1 2 3 28 28 H 1.09004 * 109.47085 * 300.00378 * 1 2 3 29 29 H 1.09003 * 109.46714 * 299.99382 * 5 3 2 30 30 H 1.08995 * 109.47205 * 59.99484 * 5 3 2 31 31 H 1.09003 * 109.46859 * 300.00043 * 6 5 3 32 32 H 1.09003 * 109.47093 * 59.99395 * 6 5 3 33 33 H 1.08993 * 109.52897 * 302.31346 * 9 7 6 34 34 H 1.09004 * 109.51860 * 62.50322 * 9 7 6 35 35 H 1.08994 * 109.50344 * 297.71458 * 10 9 7 36 36 H 1.08998 * 109.53145 * 177.61710 * 10 9 7 37 37 H 1.09000 * 109.46507 * 180.80469 * 11 10 9 38 38 H 1.09005 * 109.46652 * 60.83651 * 11 10 9 39 39 H 1.09008 * 109.47458 * 165.78920 * 13 12 11 40 40 H 1.08996 * 109.47453 * 285.79470 * 13 12 11 41 41 H 1.08994 * 109.47212 * 299.99911 * 14 13 12 42 42 H 1.09001 * 109.47358 * 60.00320 * 14 13 12 43 43 H 1.08996 * 109.47849 * 300.00255 * 15 14 13 44 44 H 1.09005 * 109.46891 * 60.00212 * 15 14 13 45 45 H 0.97005 * 119.99879 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.46535 * 178.24158 * 25 12 11 47 47 H 1.09006 * 109.45187 * 58.27272 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0003 2.7420 -0.0011 7 6 5.5281 2.8220 -0.0011 8 1 5.9225 2.2510 -0.8416 9 6 6.0702 2.2446 1.3094 10 6 7.5950 2.3833 1.3270 11 6 7.9701 3.8577 1.1623 12 7 7.4294 4.3630 -0.1061 13 6 7.8862 5.7351 -0.3638 14 6 9.3883 5.8324 -0.0899 15 6 9.8643 7.2614 -0.3590 16 16 11.6412 7.3768 -0.0342 17 6 11.9117 9.0763 -0.4123 18 1 11.0875 9.6959 -0.7335 19 6 13.1840 9.6189 -0.2973 20 7 14.1886 8.8637 0.0938 21 14 13.4706 11.4210 -0.6974 22 1 12.6385 12.2651 0.1972 23 1 14.9044 11.7508 -0.4957 24 1 13.0968 11.6797 -2.1110 25 6 5.9632 4.2837 -0.1273 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 3.9564 0.7805 0.8892 30 1 3.9557 0.7807 -0.8907 31 1 3.6102 3.2358 -0.8911 32 1 3.6108 3.2363 0.8889 33 1 5.6451 2.7906 2.1515 34 1 5.7994 1.1913 1.3830 35 1 8.0225 1.8053 0.5078 36 1 7.9838 2.0127 2.2755 37 1 9.0555 3.9584 1.1600 38 1 7.5540 4.4331 1.9893 39 1 7.6891 5.9944 -1.4041 40 1 7.3523 6.4247 0.2900 41 1 9.5856 5.5732 0.9502 42 1 9.9223 5.1429 -0.7438 43 1 9.6671 7.5204 -1.3992 44 1 9.3303 7.9513 0.2946 45 1 15.0779 9.2428 0.1738 46 1 5.5909 4.6937 -1.0662 47 1 5.5566 4.8570 0.7059 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880040695.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:53 Heat of formation + Delta-G solvation = -134.731558 kcal Electronic energy + Delta-G solvation = -23387.355406 eV Core-core repulsion = 19887.348717 eV Total energy + Delta-G solvation = -3500.006689 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.51877 -40.30207 -37.72162 -36.75453 -34.62220 -34.30368 -32.68255 -31.09346 -28.58407 -27.91329 -27.10365 -25.86732 -23.95221 -23.32801 -21.79380 -21.01513 -20.60189 -19.54823 -18.60698 -17.64319 -17.55533 -17.01278 -16.89735 -16.48633 -16.01622 -15.98340 -15.53849 -15.13793 -14.97568 -14.75194 -14.54758 -14.35603 -13.90910 -13.65683 -13.51251 -13.33965 -13.23433 -13.08922 -12.90967 -12.87058 -12.66913 -12.46548 -12.34238 -12.10475 -11.87488 -11.83927 -11.77974 -11.54505 -11.48074 -11.41570 -11.14233 -11.04638 -10.99513 -10.32240 -9.24650 -8.66947 -8.37468 -6.13981 1.18527 1.30942 1.40493 1.47206 1.73248 1.79983 2.28061 2.92729 2.96601 3.32058 3.68398 3.78489 3.87757 3.97239 4.00019 4.12318 4.19902 4.26194 4.29400 4.32322 4.33463 4.44091 4.46748 4.53639 4.58446 4.66599 4.68841 4.72732 4.75976 4.81031 4.86270 4.87596 4.95967 5.06973 5.16981 5.18627 5.21492 5.27753 5.31457 5.36717 5.38959 5.47017 5.59326 6.12459 6.17501 6.21554 6.73000 7.04512 8.71680 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.042461 B = 0.001741 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.274550 B =16083.156817 C =16595.362497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.366 6.366 3 C 0.458 3.542 4 O -0.546 6.546 5 C -0.108 4.108 6 C -0.096 4.096 7 C -0.073 4.073 8 H 0.088 0.912 9 C -0.116 4.116 10 C -0.113 4.113 11 C 0.041 3.959 12 N -0.540 5.540 13 C 0.069 3.931 14 C -0.087 4.087 15 C -0.089 4.089 16 S -0.194 6.194 17 C -0.542 4.542 18 H 0.072 0.928 19 C 0.017 3.983 20 N -0.906 5.906 21 Si 0.993 3.007 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.265 1.265 25 C 0.058 3.942 26 H 0.130 0.870 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.025 0.975 39 H 0.079 0.921 40 H 0.031 0.969 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.272 0.728 46 H 0.075 0.925 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.086 -19.988 0.994 32.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C 0.303 3.697 4 O -0.436 6.436 5 C -0.145 4.145 6 C -0.134 4.134 7 C -0.092 4.092 8 H 0.107 0.893 9 C -0.154 4.154 10 C -0.151 4.151 11 C -0.086 4.086 12 N -0.265 5.265 13 C -0.060 4.060 14 C -0.125 4.125 15 C -0.238 4.238 16 S 0.034 5.966 17 C -0.690 4.690 18 H 0.090 0.910 19 C -0.189 4.189 20 N -0.543 5.543 21 Si 0.815 3.185 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.189 1.189 25 C -0.070 4.070 26 H 0.148 0.852 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.043 0.957 39 H 0.097 0.903 40 H 0.049 0.951 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -24.205 -20.806 1.013 31.934 hybrid contribution -0.944 2.889 0.083 3.041 sum -25.150 -17.916 1.096 30.898 Atomic orbital electron populations 1.23504 0.75222 1.05562 1.02295 1.86511 1.24713 1.33274 1.83760 1.24498 0.93412 0.80858 0.70909 1.90676 1.68358 1.37537 1.47040 1.21550 0.85088 0.99754 1.08090 1.21328 0.94683 0.94482 1.02919 1.21101 0.93601 0.95044 0.99466 0.89328 1.21732 0.94842 1.02151 0.96638 1.21572 0.96639 0.94360 1.02513 1.22300 1.00209 0.96811 0.89311 1.61997 1.09668 1.20846 1.33966 1.22007 0.93759 0.88851 1.01376 1.21309 0.95507 0.93625 1.02075 1.23166 0.97458 1.00449 1.02732 1.84590 1.06499 1.16150 1.89351 1.23020 0.97817 0.95187 1.52929 0.91006 1.26056 0.94555 1.04088 0.94152 1.70148 1.00959 1.38197 1.44963 0.85078 0.77658 0.76565 0.79185 1.19010 1.19834 1.18931 1.22168 0.86523 0.97467 1.00818 0.85192 0.92222 0.92227 0.85343 0.85309 0.91742 0.92136 0.92507 0.89229 0.91057 0.90545 0.91019 0.95677 0.90271 0.95053 0.91508 0.91326 0.91875 0.92281 0.91930 0.90674 0.95539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.37 -5.03 10.56 -51.36 -0.54 -5.57 16 3 C 0.46 7.17 7.96 71.23 0.57 7.74 16 4 O -0.55 -12.43 15.73 21.94 0.35 -12.08 16 5 C -0.11 -1.01 5.57 29.85 0.17 -0.84 16 6 C -0.10 -1.25 3.97 30.59 0.12 -1.13 16 7 C -0.07 -1.01 2.35 -10.74 -0.03 -1.04 16 8 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 9 C -0.12 -1.46 4.98 30.68 0.15 -1.31 16 10 C -0.11 -1.84 6.09 30.64 0.19 -1.65 16 11 C 0.04 0.92 4.85 86.32 0.42 1.34 16 12 N -0.54 -12.59 4.81 -896.37 -4.31 -16.90 16 13 C 0.07 1.86 5.27 86.30 0.46 2.32 16 14 C -0.09 -2.84 4.47 30.59 0.14 -2.70 16 15 C -0.09 -3.63 5.67 71.98 0.41 -3.23 16 16 S -0.19 -10.51 21.44 -56.49 -1.21 -11.72 16 17 C -0.54 -31.77 9.50 67.95 0.65 -31.13 16 18 H 0.07 4.05 7.80 -2.91 -0.02 4.03 16 19 C 0.02 0.95 5.49 84.85 0.47 1.42 16 20 N -0.91 -55.12 13.22 21.65 0.29 -54.83 16 21 Si 0.99 44.28 29.55 68.60 2.03 46.31 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 25 C 0.06 1.11 4.71 86.32 0.41 1.52 16 26 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.06 0.61 8.13 -2.39 -0.02 0.59 16 28 H 0.06 0.60 8.13 -2.38 -0.02 0.58 16 29 H 0.13 0.71 6.63 -2.39 -0.02 0.69 16 30 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.97 8.10 -2.39 -0.02 0.96 16 32 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 0.71 6.70 -2.39 -0.02 0.70 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.81 5.81 -2.39 -0.01 1.80 16 38 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.03 0.84 8.08 -2.39 -0.02 0.82 16 41 H 0.07 2.22 6.21 -2.39 -0.01 2.20 16 42 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.06 2.55 8.14 -2.40 -0.02 2.53 16 44 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 46 H 0.07 1.41 8.12 -2.39 -0.02 1.39 16 47 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 Total: -1.00 -72.21 385.92 2.82 -69.39 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.92 Total: 12.64 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 5.30 Total: -27.24 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -4.02 Total: -71.73 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.20 Total: -17.65 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: -10.51 SS G_CDS: -1.21 Total: -11.72 kcal Total: -72.21 2.82 -69.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880040695.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.342 kcal (2) G-P(sol) polarization free energy of solvation -72.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds