Wall clock time and date at job start Tue Mar 31 2020 11:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36042 * 126.35034 * 2 1 4 4 N 1.30113 * 110.09722 * 179.72346 * 3 2 1 5 5 C 1.35781 * 109.64490 * 0.40839 * 4 3 2 6 6 C 1.39745 * 133.60116 * 179.88472 * 5 4 3 7 7 C 1.36596 * 119.88649 * 179.68535 * 6 5 4 8 8 C 1.50699 * 119.66634 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.47046 * 89.99935 * 8 7 6 10 10 C 1.34780 * 120.00025 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99860 * 359.97438 * 10 9 8 12 12 C 1.50700 * 119.99680 * 180.02562 * 10 9 8 13 13 C 1.53009 * 109.46606 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46821 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47201 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47475 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99720 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00489 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99548 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00154 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47214 * 60.00073 * 20 18 16 22 22 H 1.48499 * 109.46930 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47598 * 299.99624 * 20 18 16 24 24 C 1.38778 * 120.67012 * 0.02562 * 7 6 5 25 25 C 1.37853 * 120.45089 * 359.97438 * 24 7 6 26 26 C 1.38056 * 126.34699 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47218 * 270.03392 * 1 2 3 28 28 H 1.08999 * 109.46687 * 30.03107 * 1 2 3 29 29 H 1.08998 * 109.46781 * 150.02914 * 1 2 3 30 30 H 1.07996 * 124.94996 * 359.95089 * 3 2 1 31 31 H 1.08000 * 120.05505 * 359.66078 * 6 5 4 32 32 H 1.09000 * 109.47509 * 210.00517 * 8 7 6 33 33 H 1.09006 * 109.47087 * 330.00268 * 8 7 6 34 34 H 0.96997 * 120.00236 * 0.02562 * 9 8 7 35 35 H 1.08992 * 109.47270 * 299.99472 * 12 10 9 36 36 H 1.08998 * 109.47034 * 60.00511 * 12 10 9 37 37 H 1.08992 * 109.47066 * 299.99831 * 13 12 10 38 38 H 1.09003 * 109.46724 * 60.00131 * 13 12 10 39 39 H 1.09008 * 109.47106 * 300.00055 * 14 13 12 40 40 H 1.08998 * 109.47375 * 59.99721 * 14 13 12 41 41 H 1.09008 * 109.46818 * 299.99842 * 15 14 13 42 42 H 1.08994 * 109.47008 * 59.99409 * 15 14 13 43 43 H 0.97003 * 120.00157 * 179.97438 * 19 18 16 44 44 H 1.07997 * 119.77326 * 179.97438 * 24 7 6 45 45 H 1.08001 * 120.15247 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2713 1.0957 0.0000 4 7 3.5205 0.7315 0.0059 5 6 3.6008 -0.6239 0.0010 6 6 4.6681 -1.5260 0.0016 7 6 4.4233 -2.8699 0.0020 8 6 5.5779 -3.8383 0.0021 9 7 5.9522 -4.1518 1.3834 10 6 6.9679 -5.0029 1.6298 11 8 7.5716 -5.5096 0.7080 12 6 7.3525 -5.3257 3.0507 13 6 8.5249 -6.3089 3.0507 14 6 8.9149 -6.6372 4.4933 15 6 10.0877 -7.6198 4.4935 16 6 10.4715 -7.9436 5.9143 17 1 9.9331 -7.4933 6.7351 18 6 11.5107 -8.8140 6.1664 19 7 12.1666 -9.3620 5.1669 20 14 11.9869 -9.2149 7.9276 21 1 10.8285 -9.8272 8.6265 22 1 13.1250 -10.1687 7.9277 23 1 12.3854 -7.9680 8.6287 24 6 3.1221 -3.3525 0.0012 25 6 2.0539 -2.4812 0.0005 26 6 2.2832 -1.1120 0.0005 27 1 -0.3633 0.0006 1.0276 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3633 -0.8902 -0.5134 30 1 1.9251 2.1186 -0.0008 31 1 5.6846 -1.1613 0.0014 32 1 5.2844 -4.7538 -0.5115 33 1 6.4282 -3.3900 -0.5119 34 1 5.4692 -3.7468 2.1206 35 1 7.6455 -4.4103 3.5647 36 1 6.5022 -5.7747 3.5641 37 1 8.2315 -7.2242 2.5369 38 1 9.3752 -5.8603 2.5371 39 1 9.2082 -5.7219 5.0077 40 1 8.0645 -7.0858 5.0066 41 1 9.7948 -8.5351 3.9790 42 1 10.9380 -7.1707 3.9803 43 1 12.8979 -9.9741 5.3442 44 1 2.9453 -4.4178 0.0011 45 1 1.0432 -2.8620 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927715145.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:45 Heat of formation + Delta-G solvation = -9.866353 kcal Electronic energy + Delta-G solvation = -23994.304853 eV Core-core repulsion = 20396.561526 eV Total energy + Delta-G solvation = -3597.743328 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.09726 -40.79668 -38.87526 -36.64754 -35.56396 -35.16569 -34.58487 -32.22721 -31.29094 -30.56379 -28.35052 -27.56225 -26.35803 -24.21194 -23.87333 -22.28563 -21.77032 -21.65737 -21.24600 -18.41292 -18.31015 -18.08367 -17.70715 -17.09662 -16.88952 -16.69447 -16.49760 -16.14600 -15.65655 -15.09742 -15.02494 -14.75767 -14.52705 -14.42863 -14.08011 -13.98072 -13.57099 -13.47864 -13.34115 -13.28215 -12.87202 -12.76643 -12.57236 -12.41153 -12.35122 -12.13141 -12.09534 -11.37100 -11.35001 -11.32701 -11.15578 -10.96692 -10.77933 -10.52778 -10.09191 -9.35264 -9.10608 -8.16911 -6.29251 -0.03504 0.33777 1.41146 1.45380 1.53215 1.69208 1.73457 1.82555 2.28034 2.43548 2.88834 3.15480 3.25201 3.62113 3.75935 3.91068 3.93168 4.07116 4.10534 4.17365 4.22893 4.38246 4.46211 4.52238 4.58846 4.66375 4.71602 4.74609 4.79341 4.81686 4.87973 4.91632 5.09003 5.22496 5.35550 5.36912 5.38262 5.45264 5.49730 5.56518 5.59350 5.80390 5.82890 5.89858 6.21301 6.27140 6.58551 6.87787 6.88911 7.30017 7.40159 8.95024 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.031156 B = 0.001644 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.492287 B =17023.288728 C =17292.052743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.495 5.495 3 C 0.267 3.733 4 N -0.545 5.545 5 C 0.012 3.988 6 C -0.059 4.059 7 C -0.108 4.108 8 C 0.167 3.833 9 N -0.715 5.715 10 C 0.512 3.488 11 O -0.587 6.587 12 C -0.128 4.128 13 C -0.096 4.096 14 C -0.096 4.096 15 C 0.018 3.982 16 C -0.544 4.544 17 H 0.066 0.934 18 C -0.006 4.006 19 N -0.937 5.937 20 Si 0.970 3.030 21 H -0.264 1.264 22 H -0.285 1.285 23 H -0.265 1.265 24 C -0.086 4.086 25 C -0.105 4.105 26 C 0.038 3.962 27 H 0.087 0.913 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.255 0.745 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.415 0.585 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.044 0.956 38 H 0.042 0.958 39 H 0.059 0.941 40 H 0.061 0.939 41 H -0.015 1.015 42 H -0.016 1.016 43 H 0.263 0.737 44 H 0.152 0.848 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.647 22.849 -11.130 41.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.185 5.185 3 C -0.019 4.019 4 N -0.265 5.265 5 C -0.106 4.106 6 C -0.080 4.080 7 C -0.111 4.111 8 C 0.044 3.956 9 N -0.367 5.367 10 C 0.301 3.699 11 O -0.467 6.467 12 C -0.168 4.168 13 C -0.134 4.134 14 C -0.134 4.134 15 C -0.019 4.019 16 C -0.582 4.582 17 H 0.084 0.916 18 C -0.204 4.204 19 N -0.577 5.577 20 Si 0.794 3.206 21 H -0.189 1.189 22 H -0.210 1.210 23 H -0.190 1.190 24 C -0.106 4.106 25 C -0.125 4.125 26 C -0.072 4.072 27 H 0.105 0.895 28 H 0.133 0.867 29 H 0.110 0.890 30 H 0.271 0.729 31 H 0.139 0.861 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.252 0.748 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.004 0.996 42 H 0.003 0.997 43 H 0.071 0.929 44 H 0.169 0.831 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -31.561 22.922 -11.833 40.762 hybrid contribution 0.053 -0.671 0.699 0.970 sum -31.508 22.251 -11.134 40.148 Atomic orbital electron populations 1.22345 0.73175 1.06496 1.04881 1.45643 1.08904 1.04552 1.59359 1.26208 0.84320 0.95063 0.96260 1.70416 1.20742 1.11311 1.24035 1.19285 0.93274 0.90704 1.07303 1.19970 0.97543 0.91412 0.99031 1.19180 0.94728 0.92468 1.04751 1.20075 0.94631 0.97274 0.83614 1.46004 1.34877 1.46815 1.09047 1.21175 0.78962 0.77661 0.92148 1.90699 1.54413 1.53578 1.48053 1.21672 1.00421 1.02151 0.92534 1.21249 0.97105 0.98333 0.96741 1.21454 0.97922 0.98862 0.95127 1.19062 0.93557 0.93815 0.95482 1.21738 1.16299 1.26445 0.93715 0.91596 1.26093 0.96319 0.95869 1.02083 1.70130 1.22709 1.31443 1.33439 0.85428 0.77883 0.78280 0.78999 1.18900 1.21030 1.18996 1.21052 0.90426 1.00671 0.98414 1.20209 1.00860 0.87980 1.03478 1.19207 0.91061 0.90686 1.06284 0.89494 0.86652 0.88974 0.72940 0.86091 0.90468 0.91881 0.74834 0.86633 0.86226 0.93680 0.93948 0.92218 0.91996 0.99610 0.99740 0.92879 0.83079 0.83068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.02 11.18 127.77 1.43 1.41 16 2 N -0.50 -4.81 3.21 -543.65 -1.74 -6.55 16 3 C 0.27 3.01 12.50 180.05 2.25 5.27 16 4 N -0.55 -11.36 11.27 -192.02 -2.16 -13.52 16 5 C 0.01 0.25 7.23 39.45 0.29 0.54 16 6 C -0.06 -1.20 9.67 22.25 0.22 -0.98 16 7 C -0.11 -1.83 5.21 -20.12 -0.10 -1.93 16 8 C 0.17 3.27 5.78 85.63 0.49 3.76 16 9 N -0.71 -14.26 5.55 -466.78 -2.59 -16.85 16 10 C 0.51 14.32 7.83 87.66 0.69 15.01 16 11 O -0.59 -22.37 15.98 -3.04 -0.05 -22.42 16 12 C -0.13 -3.29 5.70 29.85 0.17 -3.12 16 13 C -0.10 -3.57 4.50 30.60 0.14 -3.43 16 14 C -0.10 -4.03 5.15 30.59 0.16 -3.87 16 15 C 0.02 1.01 4.97 29.85 0.15 1.15 16 16 C -0.54 -32.07 9.11 25.60 0.23 -31.83 16 17 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 18 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 19 N -0.94 -59.64 13.29 21.45 0.28 -59.35 16 20 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 24 C -0.09 -1.12 9.67 22.31 0.22 -0.90 16 25 C -0.10 -1.24 10.05 22.32 0.22 -1.02 16 26 C 0.04 0.59 6.87 38.86 0.27 0.86 16 27 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 28 H 0.12 -0.60 8.14 -2.39 -0.02 -0.62 16 29 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.25 0.21 8.06 -2.91 -0.02 0.18 16 31 H 0.12 2.54 8.06 -2.91 -0.02 2.51 16 32 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 33 H 0.06 1.41 8.07 -2.38 -0.02 1.39 16 34 H 0.41 6.02 8.46 -92.71 -0.78 5.23 16 35 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.04 1.82 8.10 -2.39 -0.02 1.80 16 38 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 39 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 40 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 41 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 42 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 43 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 44 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 45 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -86.28 383.41 3.23 -83.04 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.20 Total: 7.30 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: 7.27 Total: -19.02 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -6.21 Total: -96.27 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.05 Total: -22.42 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -86.28 3.23 -83.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927715145.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.175 kcal (2) G-P(sol) polarization free energy of solvation -86.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds